Clone Sequence Records
BO11117.3prime Sequence
797 bp (705 high quality bases) assembled on 2006-04-19
> BO11117.3prime
ATGGTCTAGAAAGCTTGCACGACGCCAGGAGCGATCCTCGGACTCCTCAT
CCTCCTCCTCATCTTCCAGGCGCAGCTCCGGCAGCGTGTCGCTGCCTAAC
AGACTCTCGCTCTCACTGACGGACTGGATTAATTGTTTGGGGTTCTCTAG
GCTAACGGACATGTCACCTGGTGCAGCGGACTTCTCAACAGGGGCGGCCA
TTGGAGCTGGAGCGGGAGTCACCACGGGAGCCCACGAGATCTGCAGGCGC
TTGTCTTTGTACATTTTGCCCCGGAGCACAGCCTGTTCGGCGTTGAGACG
GGTTGCGTATGAGAGTATTAACTGTGGAATCTCACGGTCTACATCATGCT
TAGAAATCTCGCCGAAGTTCTTAAAGTGCCCGAGGACAAAGTCTGCCTCT
TCGGCCGCAAAGCCAGTGACCACGATGGCCTTTGGCCGCCTGTCGACACG
AGTGGGTCCCTCCGGCAGATTCGGACGCTTGCGTCCTGCACCGCCACCGG
GTGCCCCGGAAGCAGGTGCATAGTGGGTAGACTTGTTATTCGCAGCTGAG
CCAACACCAAGATTGCGCTGTAACTCCTCCAATCGCTTCTGAATGGCTGT
AGTGTCGTTGCCCTCCTGTTGCTGGGCGATTAGCTCCAGTTCCATGTCAA
GCAATTCCTTCTTCTGCTGCTCCTTGGTCTTCTTGACGGGCGGCTGTTGC
TGCTGCTGTTGTTGCTGCATTTGTGCTTGCAACTGATCCTGGTCGGCCTT
GATTTCTTTTCGTAGTTTGTCGATTGTCATCTGCAGCACCTTTATTG
BO11117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10084-PA | 3189 | swm-RA | 2408..3186 | 797..19 | 3870 | 99.8 | Minus |
CG10084-PB | 3189 | swm-RB | 2408..3186 | 797..19 | 3870 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swm-RD | 3974 | CG10084-RD | 2742..3520 | 797..19 | 3880 | 99.9 | Minus |
swm-RC | 4151 | CG10084-RC | 2776..3554 | 797..19 | 3880 | 99.9 | Minus |
swm-RB | 4114 | CG10084-RB | 2739..3517 | 797..19 | 3880 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:03:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19496442..19496869 | 797..370 | 2125 | 99.8 | Minus |
2L | 23513712 | 2L | 19497157..19497381 | 243..19 | 1125 | 100 | Minus |
2L | 23513712 | 2L | 19496959..19497089 | 371..241 | 655 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 05:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2784..2955 | 744..567 | 201 | 60.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6858..7020 | 755..592 | 195 | 63.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6858 | 743..659 | 173 | 67.1 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1032..1139 | 759..651 | 173 | 64.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6881 | 731..561 | 170 | 59.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6901 | 745..563 | 170 | 60.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6908 | 743..596 | 162 | 64.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6702..6833 | 782..651 | 155 | 61.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2537 | 743..583 | 148 | 58.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2405 | 743..655 | 147 | 68.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2589..2854 | 744..484 | 147 | 55.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2951 | 740..563 | 146 | 59.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6956 | 743..585 | 145 | 60.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6810..6924 | 743..632 | 144 | 62.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2892 | 717..599 | 140 | 64 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1581 | 730..651 | 137 | 68.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2396 | 743..655 | 130 | 60.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1095..1185 | 740..650 | 130 | 64.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2425 | 724..603 | 129 | 61 | Minus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4497..4588 | 750..662 | 128 | 63 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1098..1151 | 743..693 | 127 | 75.9 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3276..3309 | 726..693 | 125 | 85.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2467 | 743..662 | 123 | 64.6 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 669..723 | 664..718 | 122 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6819..6922 | 767..661 | 121 | 62 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5640..5674 | 725..691 | 121 | 82.9 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 7095..7129 | 725..691 | 121 | 82.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1511..1588 | 769..692 | 119 | 64.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2578..2664 | 775..693 | 118 | 64.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6572 | 711..673 | 116 | 80 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6885..7019 | 743..607 | 112 | 56.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1509..1566 | 753..693 | 109 | 67.2 | Minus |
BO11117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:30 Download gff for
BO11117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-PA | 2408..3189 | 16..797 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:12 Download gff for
BO11117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10084-PB | 2408..3189 | 16..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:30:36 Download gff for
BO11117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-RB | 2739..3517 | 19..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:56 Download gff for
BO11117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-RB | 2739..3517 | 19..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:56 Download gff for
BO11117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19496442..19496869 | 370..797 | 99 | -> | Minus |
2L | 19496961..19497089 | 241..369 | 100 | -> | Minus |
2L | 19497160..19497381 | 19..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:30:36 Download gff for
BO11117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19496961..19497089 | 241..369 | 100 | -> | Minus |
arm_2L | 19496442..19496869 | 370..797 | 99 | -> | Minus |
arm_2L | 19497160..19497381 | 19..240 | 100 | | Minus |
BO11117.5prime Sequence
830 bp (828 high quality bases) assembled on 2006-04-19
> BO11117.5prime
GAAGTTATCAGTCGACATGATTCTGGAGAATTCGGACAAGCTCAAGGATT
GGCTGAGCGTGGTCCTGGAGCCACTCTGCGATGCGGACTCCTCGGCCTTG
GCGCGATATGTCATCGCGCTGCTCAAGAAGGACAAATCGGATAAAGACCT
TAAGCGGATCATGATCGAACAGCTCGATGTTTTCCTGTCCGAGGAGACGA
CACGTTTCGTTGAACGCCTCTTCGATGCCATTGCCAGCGAGGAATACCTG
ACGGTCCCTGCTGCCCCTCTAATAACAGCCTCTAGTGCATCCACCGCTGA
GCTAACAGTCGACCAGGAACTGGCCCTGGTCATTGATGGGCCCCAGGACG
ACATCGAAGCGGTTTTGGTTGCCGATTCCCCTCCACCGCCTCCTAAAGAT
AATGTGATAAAACCCGATAGCAATCAGGTCAAGTTAGAGCAGGCCAGTCA
AGATGCCAGGGAAGCTGAGGCCCTAGCTTTTATCAGCCAGGAAGCCGGCA
TTGCCATGCACGTCCCTACAGATGCCAAGCCAGCCTTTGATCATAAAACC
AAAGACTCCCACAATCAACAGTCAGCCTCCAACTACCAACACCATCATGT
GCGCAGTGCCAGCCCACCGGGCAGAAGCAGCGGCGTCAGCGGAAGTGGAG
GAGGTGGTCCCGGCGGAGCAGGTCTTGCGGCGGGTTATGCTGACAAGGAA
AACCAGCCGCGCGACAGTCGACGACGACGTGCTTCCCTGCGATCCCGTTC
CCGCTCTCGATCGCGTTCTAACGAGCGCGCTTTTCGGCGGTCCAGGTCAC
GCGACCGACGGGTGAACGAACGCGAGAAAA
BO11117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10084-PA | 3189 | swm-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
CG10084-PB | 3189 | swm-RB | 1..814 | 17..830 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swm-RB | 4114 | CG10084-RB | 331..1145 | 16..830 | 4075 | 100 | Plus |
swm-RA | 4005 | CG10084-RA | 365..1179 | 16..830 | 4075 | 100 | Plus |
swm-RD | 3974 | CG10084-RD | 331..1148 | 16..830 | 4035 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:41:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19494033..19494498 | 76..541 | 2330 | 100 | Plus |
2L | 23513712 | 2L | 19494560..19494848 | 542..830 | 1445 | 100 | Plus |
2L | 23513712 | 2L | 19493898..19493957 | 16..75 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:41:55 has no hits.
BO11117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:31 Download gff for
BO11117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:13 Download gff for
BO11117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10084-PB | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:04:15 Download gff for
BO11117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-RA | 365..1175 | 16..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:38:28 Download gff for
BO11117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-RA | 365..1175 | 16..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:38:28 Download gff for
BO11117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19493898..19493957 | 16..75 | 100 | -> | Plus |
2L | 19494033..19494498 | 76..541 | 100 | -> | Plus |
2L | 19494560..19494844 | 542..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:04:15 Download gff for
BO11117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19494560..19494844 | 542..826 | 100 | | Plus |
arm_2L | 19493898..19493957 | 16..75 | 100 | -> | Plus |
arm_2L | 19494033..19494498 | 76..541 | 100 | -> | Plus |
BO11117.complete Sequence
3220 bp (3220 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ632003
> BO11117.complete
GAAGTTATCAGTCGACATGATTCTGGAGAATTCGGACAAGCTCAAGGATT
GGCTGAGCGTGGTCCTGGAGCCACTCTGCGATGCGGACTCCTCGGCCTTG
GCGCGATATGTCATCGCGCTGCTCAAGAAGGACAAATCGGATAAAGACCT
TAAGCGGATCATGATCGAACAGCTCGATGTTTTCCTGTCCGAGGAGACGA
CACGTTTCGTTGAACGCCTCTTCGATGCCATTGCCAGCGAGGAATACCTG
ACGGTCCCTGCTGCCCCTCTAATAACAGCCTCTAGTGCATCCACCGCTGA
GCTAACAGTCGACCAGGAACTGGCCCTGGTCATTGATGGGCCCCAGGACG
ACATCGAAGCGGTTTTGGTTGCCGATTCCCCTCCACCGCCTCCTAAAGAT
AATGTGATAAAACCCGATAGCAATCAGGTCAAGTTAGAGCAGGCCAGTCA
AGATGCCAGGGAAGCTGAGGCCCTAGCTTTTATCAGCCAGGAAGCCGGCA
TTGCCATGCACGTCCCTACAGATGCCAAGCCAGCCTTTGATCATAAAACC
AAAGACTCCCACAATCAACAGTCAGCCTCCAACTACCAACACCATCATGT
GCGCAGTGCCAGCCCACCGGGCAGAAGCAGCGGCGTCAGCGGAAGTGGAG
GAGGTGGTCCCGGCGGAGCAGGTCTTGCGGCGGGTTATGCTGACAAGGAA
AACCAGCCGCGCGACAGTCGACGACGACGTGCTTCCCTGCGATCCCGTTC
CCGCTCTCGATCGCGTTCTAACGAGCGCGCTTTTCGGCGGTCCAGGTCAC
GCGACCGACGGGTGAACGAACGCGAGAAAACTCAACGACAATTCCGTAAC
AAATCTCCACCAGGCTCGCAGACCGACAATCGCCATCATGGTCGGCGCAA
CTTTGATCGCCGGCGCATCGGTGGCAACGCAGATGATCGTCCTCGATTTG
GCAACAATAAGAGCCGGCGCTCTCACAGTCGGTCAATGTCACCGGAACGA
AACGCGCGGCGCAACCAGAACTCCCCGGACCGAGTACAAACAGCCCAAGC
TAACCTAATTCCCGCTCCAGTGGCGCCGCCAGCACCCGTTGAGCATCCGG
CTTCCCATCCTCGTCAGCGCTGCCGGGACTTTGACGAGAAGGGCTATTGT
GTCAGGGGTGAAACATGTCCCTGGGACCATGGCGTCAATCCGGTAGTGTT
CGAGGGCATCAACAACACGTCCCTCATGATGTCAATGCGCGAGTACAATC
CGGATGCGCCCGAAATATGGGCTAGGAGCGGAGGTCCGCCACCAGGAGCT
GGTCAGGGACCAGTGCCTCCACCAACGCAACCAGGACAGACCACCATTAA
CCCCTTCAGCGGTAATGTGCGACCAACCACGCTAATGAGCGGCTCTGGGC
CCAGTCCGATGGGCGTTCCGAATCCCGCTGACTACGCGCGCAATCCAGGC
GCTCCGCCGCAGGCGGCCATGATGCCATTCCCTTTCAATCCCACTGCGGT
TACCACTCCCTTGCAGCGGCAGCTGATACCTATTCCCGTGGTTGATGGCG
CTCCCACGGGAGGCGTTGCTGAGGTTGGTAAGCGACGTTTCGAACTGGAG
GATACAGTGGCCATTGCCGATGTGCCAACGAAACGAAAGGTGCCGATCAA
CAGTCGTCTTGGCCCGCGTGTCAATCCCAACATGCAGCAGCATAACAGTT
CGCTGGAGCTGAGGAAGGTACCGCGCGGACTTAACACCATCGCTCATTTG
AACAACCACTTTGCTAAGTTCGGAAAGATCGTTAACATTCAGGTTTCGTA
CGAAGGCGATCCAGAGGCAGCTATCGTGACTTTTTCCACTCATGCTGAAG
CTAATGTGGCCTACAGGAGCACGGAGGCGGTGCTAAACAACCGATTTATT
AAGGTCTTCTGGCATAACGACAGCAGCGGAGCGGATGTGGGACAGATGAA
CCAGATGGGCGGCGGTGGAGGAGGCGGTGGACGGAAGAACGCCAGCCAGT
ACCATCTGCATAACGTTCCGGCAGTGCCAACACCCAATGCGGATGGTGCG
AAGATCAGCAATGCCAATCCTCTGACTGAGGCGGGAGCTGGTAACATTGG
CACCCCTGCCACGGAACAGGCCAACACAGCGGCTCCGGCATCAATGCGTC
TCAAGCTAAATACAACGACAGCTGGCGGCTCAGCTGGAGGAGCAGCTGGT
GCGGGAGCACCGGGATCAGGTCGTCCTTTGAACCCTGCCGCCAATGCCGC
TAGCATACGCAAGAAGCAGGAGGAGCAGCAGAAAGCAGTTCACCAACTGG
CTAACGGGTTGCGCAAACGCAAACAAGAATTGCTCCAGAGCTATATGAAG
CAGATGAAGACTGCTCTGGAACTGGTGGAGCGAATGGACCAGCAGGATCC
TCAGAGGGCCCCTACTCTGCAGACAATAAAGGTGCTGCAGATGACAATCG
ACAAACTACGAAAGGAAATCAAGGCCGACCAGGATCAGTTGCAAGCACAA
ATGCAGCAACAACAGCAGCAGCAACAGCCGCCCGTCAAGAAGACCAAGGA
GCAGCAGAAGAAGGAATTGCTTGACATGGAACTGGAGCTAATCGCCCAGC
AACAGGAGGGCAACGACACTACAGCCATTCAGAAGCGATTGGAGGAGTTA
CAGCGCAATCTTGGTGTTGGCTCAGCTGCGAATAACAAGTCTACCCACTA
TGCACCTGCTTCCGGGGCACCCGGTGGCGGTGCAGGACGCAAGCGTCCGA
ATCTGCCGGAGGGACCCACTCGTGTCGACAGGCGGCCAAAGGCCATCGTG
GTCACTGGCTTTGCGGCCGAAGAGGCAGACTTTGTCCTCGGGCACTTTAA
GAACTTCGGCGAGATTTCTAAGCATGATGTAGACCGTGAGATTCCACAGT
TAATACTCTCATACGCAACCCGTCTCAACGCCGAACAGGCTGTGCTCCGG
GGCAAAATGTACAAAGACAAGCGCCTGCAGATCTCGTGGGCTCCCGTGGT
GACTCCCGCTCCAGCTCCAATGGCCGCCCCTGTTGAGAAGTCCGCTGCAC
CAGGTGACATGTCCGTTAGCCTAGAGAACCCCAAACAATTAATCCAGTCC
GTCAGTGAGAGCGAGAGTCTGTTAGGCAGCGACACGCTGCCGGAGCTGCG
CCTGGAAGATGAGGAGGAGGATGAGGAGTCCGAGGATCGCTCCTGGCGTC
GTGCAAGCTTTCTAGACCAT
BO11117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swm-RB | 3189 | CG10084-PB | 1..3186 | 17..3202 | 15930 | 100 | Plus |
swm-RA | 3189 | CG10084-PA | 1..3186 | 17..3202 | 15930 | 100 | Plus |
swm-RD | 3192 | CG10084-PD | 1..3189 | 17..3202 | 15865 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swm-RB | 4114 | CG10084-RB | 331..3517 | 16..3202 | 15935 | 100 | Plus |
swm-RA | 4005 | CG10084-RA | 365..3551 | 16..3202 | 15935 | 100 | Plus |
swm-RD | 3974 | CG10084-RD | 331..3520 | 16..3202 | 15870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19494560..19496869 | 542..2851 | 11550 | 100 | Plus |
2L | 23513712 | 2L | 19494033..19494498 | 76..541 | 2330 | 100 | Plus |
2L | 23513712 | 2L | 19497157..19497381 | 2978..3202 | 1125 | 100 | Plus |
2L | 23513712 | 2L | 19496959..19497089 | 2850..2980 | 655 | 100 | Plus |
2L | 23513712 | 2L | 19493898..19493957 | 16..75 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2784..2955 | 2477..2654 | 201 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6855..7020 | 2463..2629 | 201 | 63.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1032..1139 | 2462..2570 | 182 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6858 | 2478..2562 | 173 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6881 | 2490..2660 | 170 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6901 | 2476..2658 | 170 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6677..6924 | 2345..2589 | 166 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6908 | 2478..2625 | 162 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1434..1581 | 2416..2570 | 153 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6833 | 2478..2570 | 151 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2537 | 2478..2638 | 148 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2405 | 2478..2566 | 147 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2589..2854 | 2477..2737 | 147 | 55.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2951 | 2481..2658 | 146 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2892 | 2504..2622 | 140 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2265..2425 | 2450..2618 | 132 | 59.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2251..2396 | 2423..2566 | 131 | 57.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1095..1185 | 2481..2571 | 130 | 64.5 | Plus |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4497..4588 | 2471..2559 | 128 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2578..2664 | 2446..2528 | 127 | 65.5 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3276..3309 | 2495..2528 | 125 | 85.3 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 669..723 | 2557..2503 | 122 | 69.1 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5640..5674 | 2496..2530 | 121 | 82.9 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 7095..7129 | 2496..2530 | 121 | 82.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1511..1588 | 2452..2529 | 119 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6843..6922 | 2478..2560 | 118 | 66.7 | Plus |
BO11117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:10 Download gff for
BO11117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-RB | 1..3189 | 17..3205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:52 Download gff for
BO11117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-RB | 328..3514 | 16..3202 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:24 Download gff for
BO11117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-RA | 366..3551 | 17..3204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:10 Download gff for
BO11117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-RB | 328..3514 | 16..3202 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:09 Download gff for
BO11117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swm-RA | 366..3551 | 17..3204 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:09 Download gff for
BO11117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19493899..19493957 | 17..75 | 100 | -> | Plus |
2L | 19494033..19494498 | 76..541 | 100 | -> | Plus |
2L | 19494560..19496869 | 542..2851 | 100 | -> | Plus |
2L | 19496961..19497089 | 2852..2980 | 100 | -> | Plus |
2L | 19497160..19497381 | 2981..3204 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:24 Download gff for
BO11117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19493899..19493957 | 17..75 | 100 | -> | Plus |
arm_2L | 19494033..19494498 | 76..541 | 100 | -> | Plus |
arm_2L | 19494560..19496869 | 542..2851 | 100 | -> | Plus |
arm_2L | 19496961..19497089 | 2852..2980 | 100 | -> | Plus |
arm_2L | 19497160..19497381 | 2981..3204 | 99 | | Plus |
BO11117.pep Sequence
Translation from 16 to 3220
> BO11117.pep
MILENSDKLKDWLSVVLEPLCDADSSALARYVIALLKKDKSDKDLKRIMI
EQLDVFLSEETTRFVERLFDAIASEEYLTVPAAPLITASSASTAELTVDQ
ELALVIDGPQDDIEAVLVADSPPPPPKDNVIKPDSNQVKLEQASQDAREA
EALAFISQEAGIAMHVPTDAKPAFDHKTKDSHNQQSASNYQHHHVRSASP
PGRSSGVSGSGGGGPGGAGLAAGYADKENQPRDSRRRRASLRSRSRSRSR
SNERAFRRSRSRDRRVNEREKTQRQFRNKSPPGSQTDNRHHGRRNFDRRR
IGGNADDRPRFGNNKSRRSHSRSMSPERNARRNQNSPDRVQTAQANLIPA
PVAPPAPVEHPASHPRQRCRDFDEKGYCVRGETCPWDHGVNPVVFEGINN
TSLMMSMREYNPDAPEIWARSGGPPPGAGQGPVPPPTQPGQTTINPFSGN
VRPTTLMSGSGPSPMGVPNPADYARNPGAPPQAAMMPFPFNPTAVTTPLQ
RQLIPIPVVDGAPTGGVAEVGKRRFELEDTVAIADVPTKRKVPINSRLGP
RVNPNMQQHNSSLELRKVPRGLNTIAHLNNHFAKFGKIVNIQVSYEGDPE
AAIVTFSTHAEANVAYRSTEAVLNNRFIKVFWHNDSSGADVGQMNQMGGG
GGGGGRKNASQYHLHNVPAVPTPNADGAKISNANPLTEAGAGNIGTPATE
QANTAAPASMRLKLNTTTAGGSAGGAAGAGAPGSGRPLNPAANAASIRKK
QEEQQKAVHQLANGLRKRKQELLQSYMKQMKTALELVERMDQQDPQRAPT
LQTIKVLQMTIDKLRKEIKADQDQLQAQMQQQQQQQQPPVKKTKEQQKKE
LLDMELELIAQQQEGNDTTAIQKRLEELQRNLGVGSAANNKSTHYAPASG
APGGGAGRKRPNLPEGPTRVDRRPKAIVVTGFAAEEADFVLGHFKNFGEI
SKHDVDREIPQLILSYATRLNAEQAVLRGKMYKDKRLQISWAPVVTPAPA
PMAAPVEKSAAPGDMSVSLENPKQLIQSVSESESLLGSDTLPELRLEDEE
EDEESEDRSWRRASFLDH
BO11117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swm-PB | 1062 | CG10084-PB | 1..1062 | 1..1062 | 5498 | 100 | Plus |
swm-PA | 1062 | CG10084-PA | 1..1062 | 1..1062 | 5498 | 100 | Plus |
swm-PD | 1063 | CG10084-PD | 1..1063 | 1..1062 | 5486 | 99.9 | Plus |
swm-PC | 1063 | CG10084-PC | 1..1063 | 1..1062 | 5486 | 99.9 | Plus |