Clone Sequence Records
BO11128.3prime Sequence
895 bp (833 high quality bases) assembled on 2006-04-19
> BO11128.3prime
ATGGTCTAGAAAGCTTGCCAGCAAATCGGCGCAGACGCCACCGAACCACG
CCATATAAAGGGGCAGCAGATAAACAACCAGAGCGCGACGCAGCGTCATC
TTTTCTGGGGCATCGGATGATCGATTGTCATTGGCCCCGTCATGGCCTGC
ATCCGTGTCCTCATCCTCATCCAGCTGCCTATGATCCTCATCCAGATCGT
TGTGATCTTGGTCGAAGTGAGTGGTGTGGATGAGCGGATTCTTGTCGTCC
ACTCCGCTCGTCGGTCGAGATGTGTGCGTGGGCATGTGACCCCGTCCACC
GGCGTCCTCGTCATCGTCGTTGTCTGCATCCACCGAAGGACGCTCCACGT
CCGGCTTATGGCTGGGTTCGAAGGGTCCCAGGCCAGAGCCCTCGTCATCG
TCCTCGTCGTCTTCGGACCCGGATCCAGAACCAGCTCCACTACCCGCATA
TGGCAGTTCTTCTTGTTCGCTCCACTCAACATCCTGGCCGTTGTAGGCAT
TTCGAAGGTGGACAATGGCATTCTTCAGATGACTTAGTTGAGAGGCCATT
TGAGCTGTTTGCTTAGTACTGGCAGGATTGCCTGTAAACTCCGGATTCGA
GCCGTGTTCTGTGGTGATTGAGTGCATGTATCTATCAATTGTGTGACCAT
TCCAGCACATGCCGTCCACATCGGAACTGGAGGCTATATCCTCGTTGCTA
CAAACCGAGTGCGGCAGATTGGACCAGAACTTTTTGTAGTCCTTCACTCG
CTGGCGAATGTCCCTCACGATCCTGTCCAGAATCGGTTCACGTCCACCTC
CGCTCTCATTGTCATCGTCATCGTTGTCGTCGCGATTGTTTTGCTGTTTG
CGTCGCTGTTGCTGCTGCTTTCGACGTTGCTGTTGCCGCCTGTTG
BO11128.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32146-PA | 2298 | dlp-RA | 1419..2295 | 895..19 | 4385 | 100 | Minus |
| CG32146-PB | 2820 | dlp-RB | 1941..2817 | 895..19 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-RA | 3761 | CG32146-RA | 1891..2767 | 895..19 | 4385 | 100 | Minus |
| dlp-RC | 3758 | CG32146-RC | 1891..2764 | 895..19 | 4330 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14670171..14670615 | 463..19 | 2225 | 100 | Minus |
| 3L | 28110227 | 3L | 14669580..14669843 | 895..632 | 1320 | 100 | Minus |
| 3L | 28110227 | 3L | 14669902..14670073 | 633..462 | 860 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2408 | 895..809 | 164 | 68.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6845 | 895..823 | 149 | 72.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2450 | 888..821 | 144 | 69.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6800 | 895..823 | 142 | 73.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6826 | 895..821 | 141 | 70.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2350 | 887..842 | 140 | 78.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2667 | 888..820 | 133 | 70 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1068..1162 | 893..800 | 130 | 61.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2836 | 889..839 | 129 | 72.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6864 | 895..836 | 127 | 72.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2492 | 894..836 | 126 | 70 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3323 | 885..841 | 126 | 75.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6779 | 884..823 | 125 | 71.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6906 | 895..810 | 125 | 64 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2451 | 888..817 | 117 | 67.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2451 | 895..823 | 116 | 68.5 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1100..1171 | 895..824 | 116 | 65.8 | Minus |
| G6 | 2042 | G6 G6_DM 2042bp | 558..600 | 415..373 | 116 | 74.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2483..2530 | 889..842 | 114 | 70.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1585 | 890..842 | 110 | 69.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2617..2685 | 890..823 | 108 | 63.8 | Minus |
BO11128.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:44 Download gff for
BO11128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-PA | 1419..2298 | 16..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:33 Download gff for
BO11128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32146-PB | 1941..2820 | 16..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:25 Download gff for
BO11128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 1891..2767 | 19..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:00 Download gff for
BO11128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 1891..2767 | 19..895 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:00 Download gff for
BO11128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14669580..14669843 | 632..895 | 100 | -> | Minus |
| 3L | 14669904..14670073 | 462..631 | 100 | -> | Minus |
| 3L | 14670173..14670615 | 19..461 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:25 Download gff for
BO11128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14662680..14662943 | 632..895 | 100 | -> | Minus |
| arm_3L | 14663004..14663173 | 462..631 | 100 | -> | Minus |
| arm_3L | 14663273..14663715 | 19..461 | 100 | | Minus |
BO11128.5prime Sequence
845 bp (817 high quality bases) assembled on 2006-04-19
> BO11128.5prime
GAAGTTATCAGTCGACATGCTACATCAGCAGCAACAACAACAACATCTGC
ATTGCAGAAGAAAAGCTACAGCAACAACAACTGCCCGCCTTGTGATATTC
AGCAGTCCTCTTCTACTATTACTACTCACCACCCACTTGCCGCCCACCTT
ACAAGCGGACAATGGCCCCGCCCCCCAAGTGGCCGCCCTTGCCGCCCCCA
ATCCGGCGGGTGGCGTAGCAGGGTCTTCGATCATCGATCAATTCAGTCCG
AATTGCAGTGCTGTGACACACATTTTCCAAGCGAGAGGAATCGATGCCAT
CGAAATTCCCCAAAAACCCAGTAACGAACGAGTCCTACGATATTGCGAGT
CCCCTTCGGTGGGCACTTGTTGCACCTACAACATGGAGACCCGCATGGCG
ATGCAATCCCGCCAGCAGCTCGAAGGGCACACCAAGGACCAGATCTCTCG
TATGTCTGGAATCCTGGGCAGCAAGGCCACAAAATTCAAAGATATTTTCA
CGGCCCTGCTCAAAGAGTCGCGAACGCAGTTCAATAGTATGTTCATCCGA
ACATACGGCGTCATTTACGAGAGAAATTCGTACGTCTTCTCGGATCTGTT
CAAGGAGTTGGAAACCTACTTCGCCAACGGTCGCGTGGACTTGCTGGAGG
TCATGGACAAGTTCTTCAATACGCTATACCAGAAGATGTTCACCGTGCTG
AACACCCAGTACACATTTGATGAAAACTACATGCGATGCGTCAGCGAGCA
CATGAAGGAGCTGAAGCCTTTCGGAGATGTTCCGGACAAGCTGTCCGTGC
AAATCAAGCGATCCTTTGTGGCCACGCGCACCTATGGCCAGGCTC
BO11128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32146-PA | 2298 | dlp-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
| CG32146-PB | 2820 | dlp-RB | 1..711 | 17..727 | 3555 | 100 | Plus |
| CG32146-PB | 2820 | dlp-RB | 1233..1351 | 727..845 | 595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-RC | 3758 | CG32146-RC | 473..1301 | 17..845 | 4145 | 100 | Plus |
| dlp-RA | 3761 | CG32146-RA | 473..1301 | 17..845 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14633073..14633382 | 17..326 | 1550 | 100 | Plus |
| 3L | 28110227 | 3L | 14664834..14665070 | 490..726 | 1185 | 100 | Plus |
| 3L | 28110227 | 3L | 14664295..14664460 | 326..491 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 14667259..14667377 | 727..845 | 595 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6836 | 20..84 | 160 | 75.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2379 | 20..81 | 154 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2391 | 23..84 | 152 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2427 | 19..81 | 148 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2517 | 23..84 | 144 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6865 | 19..83 | 144 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2472 | 20..81 | 143 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6782 | 21..84 | 135 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6803 | 20..84 | 131 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2466 | 19..81 | 130 | 70.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6644 | 23..72 | 128 | 76 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8100 | 23..72 | 128 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1548..1612 | 13..81 | 127 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2860 | 20..79 | 126 | 72.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1132..1163 | 19..50 | 124 | 87.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1165 | 23..77 | 119 | 73.2 | Plus |
| rover | 7318 | rover ROVER 7318bp | 1536..1603 | 431..499 | 108 | 63.8 | Plus |
BO11128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:45 Download gff for
BO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:35 Download gff for
BO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32146-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:41:51 Download gff for
BO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 463..1301 | 3..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:23 Download gff for
BO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 463..1301 | 3..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:23 Download gff for
BO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14633063..14633382 | 3..326 | 98 | -> | Plus |
| 3L | 14664296..14664460 | 327..491 | 100 | -> | Plus |
| 3L | 14664836..14665070 | 492..726 | 100 | -> | Plus |
| 3L | 14667259..14667377 | 727..845 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:41:51 Download gff for
BO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14626163..14626482 | 3..326 | 98 | -> | Plus |
| arm_3L | 14657396..14657560 | 327..491 | 100 | -> | Plus |
| arm_3L | 14657936..14658170 | 492..726 | 100 | -> | Plus |
| arm_3L | 14660359..14660477 | 727..845 | 100 | | Plus |
BO11128.complete Sequence
2329 bp (2329 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ632005
> BO11128.complete
GAAGTTATCAGTCGACATGCTACATCAGCAGCAACAACAACAACATCTGC
ATTGCAGAAGAAAAGCTACAGCAACAACAACTGCCCGCCTTGTGATATTC
AGCAGTCCTCTTCTACTATTACTACTCACCACCCACTTGCCGCCCACCTT
ACAAGCGGACAATGGCCCCGCCCCCCAAGTGGCCGCCCTTGCCGCCCCCA
ATCCGGCGGGTGGCGTAGCAGGGTCTTCGATCATCGATCAATTCAGTCCG
AATTGCAGTGCTGTGACACACATTTTCCAAGCGAGAGGAATCGATGCCAT
CGAAATTCCCCAAAAACCCAGTAACGAACGAGTCCTACGATATTGCGAGT
CCCCTTCGGTGGGCACTTGTTGCACCTACAACATGGAGACCCGCATGGCG
ATGCAATCCCGCCAGCAGCTCGAAGGGCACACCAAGGACCAGATCTCTCG
TATGTCTGGAATCCTGGGCAGCAAGGCCACAAAATTCAAAGATATTTTCA
CGGCCCTGCTCAAAGAGTCGCGAACGCAGTTCAATAGTATGTTCATCCGA
ACATACGGCGTCATTTACGAGAGAAATTCGTACGTCTTCTCGGATCTGTT
CAAGGAGTTGGAAACCTACTTCGCCAACGGTCGCGTGGACTTGCTGGAGG
TCATGGACAAGTTCTTCAATACGCTATACCAGAAGATGTTCACCGTGCTG
AACACCCAGTACACATTTGATGAAAACTACATGCGATGCGTCAGCGAGCA
CATGAAGGAGCTGAAGCCTTTCGGAGATGTTCCGGACAAGCTGTCCGTGC
AAATCAAGCGATCCTTTGTGGCCACGCGCACCTATGGCCAGGCTCTGACC
ACCGCTTCGGAAGTGGCGAAGAAGGTCCTCAATGTGCGACTGAATGCCGA
TTGTACTGGGGCTCTTACCAAGATGCAGCACTGTGGTGCTTGCAAGGGAT
ATACGGAAAAGCCCTGTACCAACTACTGTGTGAACGTCATCAAGGGATGC
CTGCACTATCAGCACGAGTTCGACAGCGAATGGGAGAACTTTGCGATGGC
CATGGACAAGGTGGCGGAACGACTGCTGGGATCCTTCAACATTGTGATGG
TGGTGGAGCCACTCAACATCAAGATCTCCGAGGCCATCATGAACTTCCAG
GATTCTGGCCAGGACATCACCAACCGCGTATTCCAAGGATGCGGTAGGCC
AAAGTTGAAGAAAATGAAACGGTCCATCAGCCCCAAACTGCAAGGAGTTC
AAATCCTCAACGCAAGGAGTCCTGTGGAGGCCGATACTCTGGACATTGAT
GAAACGTTGGACGAGGCGATTGTGCTGAGAGAACGCAGAGCTGCTGAGCC
CGGCTCACAGGAGACATCGGCGCAACAGTCTCAAGAGCAAGGAGTTGGAA
AGAGTGGAAATGGAGGAGGAGGCGGTGGCGGTAACAACAGGCGGCAACAG
CAACGTCGAAAGCAGCAGCAACAGCGACGCAAACAGCAAAACAATCGCGA
CGACAACGATGACGATGACAATGAGAGCGGAGGTGGACGTGAACCGATTC
TGGACAGGATCGTGAGGGACATTCGCCAGCGAGTGAAGGACTACAAAAAG
TTCTGGTCCAATCTGCCGCACTCGGTTTGTAGCAACGAGGATATAGCCTC
CAGTTCCGATGTGGACGGCATGTGCTGGAATGGTCACACAATTGATAGAT
ACATGCACTCAATCACCACAGAACACGGCTCGAATCCGGAGTTTACAGGC
AATCCTGCCAGTACTAAGCAAACAGCTCAAATGGCCTCTCAACTAAGTCA
TCTGAAGAATGCCATTGTCCACCTTCGAAATGCCTACAACGGCCAGGATG
TTGAGTGGAGCGAACAAGAAGAACTGCCATATGCGGGTAGTGGAGCTGGT
TCTGGATCCGGGTCCGAAGACGACGAGGACGATGACGAGGGCTCTGGCCT
GGGACCCTTCGAACCCAGCCATAAGCCGGACGTGGAGCGTCCTTCGGTGG
ATGCAGACAACGACGATGACGAGGACGCCGGTGGACGGGGTCACATGCCC
ACGCACACATCTCGACCGACGAGCGGAGTGGACGACAAGAATCCGCTCAT
CCACACCACTCACTTCGACCAAGATCACAACGATCTGGATGAGGATCATA
GGCAGCTGGATGAGGATGAGGACACGGATGCAGGCCATGACGGGGCCAAT
GACAATCGATCATCCGATGCCCCAGAAAAGATGACGCTGCGTCGCGCTCT
GGTTGTTTATCTGCTGCCCCTTTATATGGCGTGGTTCGGTGGCGTCTGCG
CCGATTTGCTGGCAAGCTTTCTAGACCAT
BO11128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-RA | 2298 | CG32146-PA | 1..2295 | 17..2311 | 11460 | 100 | Plus |
| dlp-RC | 2295 | CG32146-PC | 1..2292 | 17..2311 | 11380 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-RA | 3761 | CG32146-RA | 473..2767 | 17..2311 | 11460 | 100 | Plus |
| dlp-RC | 3758 | CG32146-RC | 473..2764 | 17..2311 | 11380 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14669293..14669843 | 1148..1698 | 2755 | 100 | Plus |
| 3L | 28110227 | 3L | 14670171..14670615 | 1867..2311 | 2225 | 100 | Plus |
| 3L | 28110227 | 3L | 14633073..14633382 | 17..326 | 1550 | 100 | Plus |
| 3L | 28110227 | 3L | 14667475..14667742 | 884..1151 | 1340 | 100 | Plus |
| 3L | 28110227 | 3L | 14664834..14665070 | 490..726 | 1185 | 100 | Plus |
| 3L | 28110227 | 3L | 14669902..14670073 | 1697..1868 | 860 | 100 | Plus |
| 3L | 28110227 | 3L | 14664295..14664460 | 326..491 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 14667259..14667417 | 727..885 | 780 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-28 08:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2408 | 1402..1521 | 182 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6845 | 1429..1507 | 161 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6836 | 20..84 | 160 | 75.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6800 | 1428..1507 | 159 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2379 | 20..81 | 154 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6826 | 1429..1509 | 153 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2450 | 1362..1509 | 150 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2517 | 23..84 | 144 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6864 | 1364..1494 | 144 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6865 | 19..83 | 144 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2472 | 20..81 | 143 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2350 | 1401..1488 | 141 | 64.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1031..1162 | 1398..1530 | 139 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6906 | 1364..1520 | 136 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6782 | 21..84 | 135 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2667 | 1429..1510 | 135 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2451 | 1414..1513 | 133 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2836 | 1434..1491 | 133 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6803 | 20..84 | 131 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2466 | 19..81 | 130 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2428..2492 | 1433..1494 | 128 | 70.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6644 | 23..72 | 128 | 76 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8100 | 23..72 | 128 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1548..1612 | 13..81 | 127 | 71 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3263..3323 | 1428..1489 | 127 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2802..2860 | 20..79 | 126 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6779 | 1446..1507 | 125 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1132..1163 | 19..50 | 124 | 87.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1158 | 1414..1491 | 123 | 65.4 | Plus |
| G6 | 2042 | G6 G6_DM 2042bp | 558..600 | 1915..1957 | 116 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2530 | 1372..1488 | 115 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1585 | 1433..1488 | 114 | 69 | Plus |
BO11128.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:11 Download gff for
BO11128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 1..2298 | 17..2314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:22 Download gff for
BO11128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 454..2748 | 17..2313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:52 Download gff for
BO11128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 473..2767 | 17..2313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:11 Download gff for
BO11128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 444..2748 | 3..2311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:18:46 Download gff for
BO11128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 473..2767 | 17..2313 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:18:46 Download gff for
BO11128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14633073..14633382 | 17..326 | 100 | -> | Plus |
| 3L | 14664296..14664460 | 327..491 | 100 | -> | Plus |
| 3L | 14664836..14665070 | 492..726 | 100 | -> | Plus |
| 3L | 14667259..14667415 | 727..883 | 99 | -> | Plus |
| 3L | 14667475..14667741 | 884..1150 | 100 | -> | Plus |
| 3L | 14669296..14669843 | 1151..1698 | 100 | -> | Plus |
| 3L | 14669904..14670073 | 1699..1868 | 100 | -> | Plus |
| 3L | 14670173..14670615 | 1869..2313 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:52 Download gff for
BO11128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14626173..14626482 | 17..326 | 100 | -> | Plus |
| arm_3L | 14657396..14657560 | 327..491 | 100 | -> | Plus |
| arm_3L | 14657936..14658170 | 492..726 | 100 | -> | Plus |
| arm_3L | 14660359..14660515 | 727..883 | 99 | -> | Plus |
| arm_3L | 14660575..14660841 | 884..1150 | 100 | -> | Plus |
| arm_3L | 14662396..14662943 | 1151..1698 | 100 | -> | Plus |
| arm_3L | 14663004..14663173 | 1699..1868 | 100 | -> | Plus |
| arm_3L | 14663273..14663715 | 1869..2313 | 99 | | Plus |
BO11128.pep Sequence
Translation from 16 to 2329
> BO11128.pep
MLHQQQQQQHLHCRRKATATTTARLVIFSSPLLLLLLTTHLPPTLQADNG
PAPQVAALAAPNPAGGVAGSSIIDQFSPNCSAVTHIFQARGIDAIEIPQK
PSNERVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQISRMSGIL
GSKATKFKDIFTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELET
YFANGRVDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHMKELK
PFGDVPDKLSVQIKRSFVATRTYGQALTTASEVAKKVLNVRLNADCTGAL
TKMQHCGACKGYTEKPCTNYCVNVIKGCLHYQHEFDSEWENFAMAMDKVA
ERLLGSFNIVMVVEPLNIKISEAIMNFQDSGQDITNRVFQGCGRPKLKKM
KRSISPKLQGVQILNARSPVEADTLDIDETLDEAIVLRERRAAEPGSQET
SAQQSQEQGVGKSGNGGGGGGGNNRRQQQRRKQQQQRRKQQNNRDDNDDD
DNESGGGREPILDRIVRDIRQRVKDYKKFWSNLPHSVCSNEDIASSSDVD
GMCWNGHTIDRYMHSITTEHGSNPEFTGNPASTKQTAQMASQLSHLKNAI
VHLRNAYNGQDVEWSEQEELPYAGSGAGSGSGSEDDEDDDEGSGLGPFEP
SHKPDVERPSVDADNDDDEDAGGRGHMPTHTSRPTSGVDDKNPLIHTTHF
DQDHNDLDEDHRQLDEDEDTDAGHDGANDNRSSDAPEKMTLRRALVVYLL
PLYMAWFGGVCADLLASFLDH
BO11128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-PA | 765 | CG32146-PA | 1..765 | 1..765 | 4045 | 100 | Plus |
| dlp-PC | 764 | CG32146-PC | 1..764 | 1..765 | 4028 | 99.9 | Plus |
| dally-PB | 626 | CG4974-PB | 96..411 | 116..397 | 256 | 24.7 | Plus |
| dally-PA | 626 | CG4974-PA | 96..411 | 116..397 | 256 | 24.7 | Plus |
