Clone Sequence Records
BO11133.3prime Sequence
825 bp (712 high quality bases) assembled on 2006-04-19
> BO11133.3prime
ATGGTCTAGAAAGCTTGCATCACAAGGACAAATGCTTTCCGAGAGAGTAT
AAAATAAATATATTGGTATATCTGTGTTGTCGCCTCTGCGTTGGCACGAG
TGCAACGCATTACGGTCTGTTTTGGTTTTTTTTTTAGCATACTTCATCTG
TTGTCGCTTCAGCTCGAGGCGTTCCAGCTCGATTTTTTCTCTCTCCAGCT
TCTGGCGCTCGCGCTCCATCCGCAAAAGCTCGGCCTTCTCCCGCTCGAGC
CGTTCCCGCTCCACAGCGAGCTTGCGCCGTTCTTCCTGCAGACGTTCCTC
TTCGATTCGCTGGCGCTCACGGGCCTCCCGACGGCGACGCTCCTCCTCAC
GCAGCTCACGCTCCCTTTCCCGAAGGCGCTGGCGCTCGCGCTCCTCACGT
ATCTTCTGGTAGGACAGCATCTCTCGTTGACGACGCTCGCGCTCCCTCTG
GCGCTGCTGAATCTCACGGTCGACGTCGCGTGGATTGCGCCCCGAACGAT
GATCCTGACTACCCTTTGCGGATCGCTCGCGATCGTGGCGCGGTCTATCC
TGGCTTGCCAACGACTTGCCCCGGTCATCGTTGCGACGGCTGCGGGCCCT
GTTGCTCTCCTTGCCATCACGCTTTAAATCGCCACCAACAGACTTGCTGT
CGCCGTTTCCATCGCCGCCCTTCTTGTCATCGCCACTGTTGGAGCTGGAG
CCCTTGCCACTACCAGACTTTTTGCCACTGTCGTCTTCCTTCTTCTTGTT
TCCGGCGTCGCCCGGAGCCTTGCCCTTGCCCTCTTTGGAATTCAAGCTGC
CGCCAATCTCGTTCTTGGTACGCTC
BO11133.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6995-PC | 1179 | CG6995-RC | 370..1176 | 825..19 | 4035 | 100 | Minus |
CG6995-PA | 2001 | CG6995-RA | 370..1053 | 825..142 | 3420 | 100 | Minus |
CG6995-PB | 2787 | CG6995-RB | 1156..1839 | 825..142 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Saf-B-RC | 4332 | CG6995-RC | 2188..2994 | 825..19 | 4035 | 100 | Minus |
Saf-B-RB | 3124 | CG6995-RB | 1309..1992 | 825..142 | 3420 | 100 | Minus |
Saf-B-RA | 4003 | CG6995-RA | 2188..2871 | 825..142 | 3420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24820085..24820891 | 825..19 | 4035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:50:49 has no hits.
BO11133.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:53 Download gff for
BO11133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-PC | 370..1179 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:45 Download gff for
BO11133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-PC | 370..1179 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:32:01 Download gff for
BO11133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RC | 2188..2998 | 13..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:07:47 Download gff for
BO11133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RC | 2188..2998 | 13..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:07:47 Download gff for
BO11133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24820085..24820895 | 13..825 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:32:01 Download gff for
BO11133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20645807..20646617 | 13..825 | 99 | | Minus |
BO11133.5prime Sequence
840 bp (760 high quality bases) assembled on 2006-04-19
> BO11133.5prime
GAAGTTATCAGTCGACATGGAACTTGCAGAGAAATCGACAGCAGCACCTG
GTGGTGCCACATCCTCCACTGCATCGAGTGCCGCTGGCAGTAAATCGGGA
TCCGGTTCCAGTGCTGGCAATGGTACTGGGGCCAACTCAAACAACAAGCA
GGCGACGCTGTCGCGAAATCTATGGGTTTCTGGGCTGTCCACTTTAACCC
GTGCCAGCGACCTTAAGGCAATCTTCTCCAAGTTTGGCAAGGTGATTGGG
GCCAAGGTGGTCACCAATACGCGTACTCCGGGCACTCGCTGCTACGGATA
CGTGACCATGTCCTCCTCGGCAGACGCCTCGCGTTGCATCGAAAATCTGC
ACCGCACCGAATTGCATGGACGCATCATTTCGGTGGAGCGTACCAAGAAC
GAGATTGGCGGCAGCTTGAATTCCAAAGAGGGCAAGGGCAAGGCTCCGGG
CGACGCCGGAAACAAGAAGAAGGAAGACGACAGTGGCAAAAAGTCTGGTA
GTGGCAAGGGCTCCAGCTCCAACAGTGGCGATGACAAGAAGGGCGGCGAT
GGAAACGGCGACAGCAAGTCTGTTGGTGGCGATTTAAAGCGTGATGGCAA
GGAGAGCAACAGGGCCCGCAGCCGTCGCAACGATGACCGGGGCAAGTCGT
TGGCAAGCCAGGATAGACCGCGCCACGATCGCGAGCGATCCGCANAGGGT
AGTCAGGATCATCGTTCGGGGCGCAATCCACGCGACGTCGACCGTGAGAT
TCAGCAGCGCCAGAGGGAGCGCGAGCGTCGTCAACGAGAGATGCTGTCCT
ACCAGAAGATACGTGAGGAGCGCGAGCGCCAGCGCCTTCG
BO11133.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6995-PA | 2001 | CG6995-RA | 1..824 | 17..840 | 4101 | 99.8 | Plus |
CG6995-PC | 1179 | CG6995-RC | 1..824 | 17..840 | 4101 | 99.8 | Plus |
CG6995-PB | 2787 | CG6995-RB | 798..1610 | 28..840 | 4046 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Saf-B-RC | 4332 | CG6995-RC | 1817..2642 | 15..840 | 4119 | 99.9 | Plus |
Saf-B-RA | 4003 | CG6995-RA | 1817..2642 | 15..840 | 4119 | 99.9 | Plus |
Saf-B-RB | 3124 | CG6995-RB | 951..1763 | 28..840 | 4054 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24819714..24820539 | 15..840 | 4119 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:28:40 has no hits.
BO11133.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:54 Download gff for
BO11133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-PA | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:46 Download gff for
BO11133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-PC | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:29:43 Download gff for
BO11133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RA | 1808..2642 | 5..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:36 Download gff for
BO11133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RA | 1808..2642 | 5..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:36 Download gff for
BO11133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24819705..24820539 | 5..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:29:43 Download gff for
BO11133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20645427..20646261 | 5..840 | 99 | | Plus |
BO11133.complete Sequence
1210 bp (1210 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ632006
> BO11133.complete
GAAGTTATCAGTCGACATGGAACTTGCAGAGAAATCGACAGCAGCACCTG
GTGGTGCCACATCCTCCACTGCATCGAGTGCCGCTGGCAGTAAATCGGGA
TCCGGTTCCAGTGCTGGCAATGGTACTGGGGCCAACTCAAACAACAAGCA
GGCGACGCTGTCGCGAAATCTATGGGTTTCTGGGCTGTCCACTTTAACCC
GTGCCAGCGACCTTAAGGCAATCTTCTCCAAGTTTGGCAAGGTGATTGGG
GCCAAGGTGGTCACCAATACGCGTACTCCGGGCACTCGCTGCTACGGATA
CGTGACCATGTCCTCCTCGGCAGACGCCTCGCGTTGCATCGAAAATCTGC
ACCGCACCGAATTGCATGGACGCATCATTTCGGTGGAGCGTACCAAGAAC
GAGATTGGCGGCAGCTTGAATTCCAAAGAGGGCAAGGGCAAGGCTCCGGG
CGACGCCGGAAACAAGAAGAAGGAAGACGACAGTGGCAAAAAGTCTGGTA
GTGGCAAGGGCTCCAGCTCCAACAGTGGCGATGACAAGAAGGGCGGCGAT
GGAAACGGCGACAGCAAGTCTGTTGGTGGCGATTTAAAGCGTGATGGCAA
GGAGAGCAACAGGGCCCGCAGCCGTCGCAACGATGACCGGGGCAAGTCGT
TGGCAAGCCAGGATAGACCGCGCCACGATCGCGAGCGATCCGCAAAGGGT
AGTCAGGATCATCGTTCGGGGCGCAATCCACGCGACGTCGACCGTGAGAT
TCAGCAGCGCCAGAGGGAGCGCGAGCGTCGTCAACGAGAGATGCTGTCCT
ACCAGAAGATACGTGAGGAGCGCGAGCGCCAGCGCCTTCGGGAAAGGGAG
CGTGAGCTGCGTGAGGAGGAGCGTCGCCGTCGGGAGGCCCGTGAGCGCCA
GCGAATCGAAGAGGAACGTCTGCAGGAAGAACGGCGCAAGCTCGCTGTGG
AGCGGGAACGGCTCGAGCGGGAGAAGGCCGAGCTTTTGCGGATGGAGCGC
GAGCGCCAGAAGCTGGAGAGAGAAAAAATCGAGCTGGAACGCCTCGAGCT
GAAGCGACAACAGATGAAGTATGCTAAAAAAAAAACCAAAACAGACCGTA
ATGCGTTGCACTCGTGCCAACGCAGAGGCGACAACACAGATATACCAATA
TATTTATTTTATACTCTCTCGGAAAGCATTTGTCCTTGTGATGCAAGCTT
TCTAGACCAT
BO11133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Saf-B-RC | 1179 | CG6995-PC | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Saf-B-RA | 2001 | CG6995-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Saf-B-RB | 2787 | CG6995-PB | 798..1839 | 28..1069 | 5210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Saf-B-RC | 4332 | CG6995-RC | 1817..2994 | 15..1192 | 5890 | 100 | Plus |
Saf-B-RA | 4003 | CG6995-RA | 1817..2871 | 15..1069 | 5275 | 100 | Plus |
Saf-B-RB | 3124 | CG6995-RB | 951..1992 | 28..1069 | 5210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24819714..24820891 | 15..1192 | 5890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:00:38 has no hits.
BO11133.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:35 Download gff for
BO11133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-RC | 1..1179 | 17..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:27 Download gff for
BO11133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-RC | 1018..2208 | 5..1198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:36 Download gff for
BO11133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RC | 1819..2994 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:35 Download gff for
BO11133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-RC | 1018..2208 | 5..1198 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:50 Download gff for
BO11133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RC | 1819..2994 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:50 Download gff for
BO11133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24819716..24820891 | 17..1194 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:36 Download gff for
BO11133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20645438..20646613 | 17..1194 | 99 | | Plus |
BO11133.pep Sequence
Translation from 16 to 1210
> BO11133.pep
MELAEKSTAAPGGATSSTASSAAGSKSGSGSSAGNGTGANSNNKQATLSR
NLWVSGLSTLTRASDLKAIFSKFGKVIGAKVVTNTRTPGTRCYGYVTMSS
SADASRCIENLHRTELHGRIISVERTKNEIGGSLNSKEGKGKAPGDAGNK
KKEDDSGKKSGSGKGSSSNSGDDKKGGDGNGDSKSVGGDLKRDGKESNRA
RSRRNDDRGKSLASQDRPRHDRERSAKGSQDHRSGRNPRDVDREIQQRQR
ERERRQREMLSYQKIREERERQRLRERERELREEERRRREARERQRIEEE
RLQEERRKLAVERERLEREKAELLRMERERQKLEREKIELERLELKRQQM
KYAKKKTKTDRNALHSCQRRGDNTDIPIYLFYTLSESICPCDASFLDH
BO11133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Saf-B-PC | 392 | CG6995-PC | 1..392 | 1..392 | 1989 | 100 | Plus |
Saf-B-PA | 666 | CG6995-PA | 1..377 | 1..375 | 1770 | 94.4 | Plus |
Saf-B-PB | 928 | CG6995-PB | 267..639 | 5..375 | 1752 | 94.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 487..700 | 150..370 | 244 | 29 | Plus |
CG2839-PA | 826 | CG2839-PA | 311..559 | 124..372 | 238 | 24.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 465..712 | 109..370 | 224 | 27.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 525..758 | 137..373 | 224 | 26.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 389..628 | 124..361 | 220 | 25.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 359..574 | 149..370 | 218 | 26.2 | Plus |
CG2839-PA | 826 | CG2839-PA | 267..462 | 149..361 | 217 | 28.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 436..664 | 137..370 | 217 | 27.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 354..599 | 113..361 | 213 | 25.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 433..659 | 150..370 | 210 | 28.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 276..447 | 191..370 | 208 | 29.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 272..511 | 109..361 | 206 | 22.4 | Plus |
CG4119-PB | 998 | CG4119-PB | 232..485 | 106..370 | 200 | 27.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 266..441 | 196..370 | 197 | 28.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 264..420 | 213..372 | 192 | 31.7 | Plus |