Clone BO11133 Report

Search the DGRC for BO11133

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:111
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptSaf-B-RC
Protein status:BO11133.pep: validated not full length
Sequenced Size:1210

Clone Sequence Records

BO11133.3prime Sequence

825 bp (712 high quality bases) assembled on 2006-04-19

> BO11133.3prime
ATGGTCTAGAAAGCTTGCATCACAAGGACAAATGCTTTCCGAGAGAGTAT
AAAATAAATATATTGGTATATCTGTGTTGTCGCCTCTGCGTTGGCACGAG
TGCAACGCATTACGGTCTGTTTTGGTTTTTTTTTTAGCATACTTCATCTG
TTGTCGCTTCAGCTCGAGGCGTTCCAGCTCGATTTTTTCTCTCTCCAGCT
TCTGGCGCTCGCGCTCCATCCGCAAAAGCTCGGCCTTCTCCCGCTCGAGC
CGTTCCCGCTCCACAGCGAGCTTGCGCCGTTCTTCCTGCAGACGTTCCTC
TTCGATTCGCTGGCGCTCACGGGCCTCCCGACGGCGACGCTCCTCCTCAC
GCAGCTCACGCTCCCTTTCCCGAAGGCGCTGGCGCTCGCGCTCCTCACGT
ATCTTCTGGTAGGACAGCATCTCTCGTTGACGACGCTCGCGCTCCCTCTG
GCGCTGCTGAATCTCACGGTCGACGTCGCGTGGATTGCGCCCCGAACGAT
GATCCTGACTACCCTTTGCGGATCGCTCGCGATCGTGGCGCGGTCTATCC
TGGCTTGCCAACGACTTGCCCCGGTCATCGTTGCGACGGCTGCGGGCCCT
GTTGCTCTCCTTGCCATCACGCTTTAAATCGCCACCAACAGACTTGCTGT
CGCCGTTTCCATCGCCGCCCTTCTTGTCATCGCCACTGTTGGAGCTGGAG
CCCTTGCCACTACCAGACTTTTTGCCACTGTCGTCTTCCTTCTTCTTGTT
TCCGGCGTCGCCCGGAGCCTTGCCCTTGCCCTCTTTGGAATTCAAGCTGC
CGCCAATCTCGTTCTTGGTACGCTC

BO11133.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6995-PC 1179 CG6995-RC 370..1176 825..19 4035 100 Minus
CG6995-PA 2001 CG6995-RA 370..1053 825..142 3420 100 Minus
CG6995-PB 2787 CG6995-RB 1156..1839 825..142 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Saf-B-RC 4332 CG6995-RC 2188..2994 825..19 4035 100 Minus
Saf-B-RB 3124 CG6995-RB 1309..1992 825..142 3420 100 Minus
Saf-B-RA 4003 CG6995-RA 2188..2871 825..142 3420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24820085..24820891 825..19 4035 100 Minus
Blast to na_te.dros performed on 2015-02-01 10:50:49 has no hits.

BO11133.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:53 Download gff for BO11133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6995-PC 370..1179 18..825 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:45 Download gff for BO11133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6995-PC 370..1179 18..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:32:01 Download gff for BO11133.3prime
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RC 2188..2998 13..825 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:07:47 Download gff for BO11133.3prime
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RC 2188..2998 13..825 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:07:47 Download gff for BO11133.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24820085..24820895 13..825 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:32:01 Download gff for BO11133.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20645807..20646617 13..825 99   Minus

BO11133.5prime Sequence

840 bp (760 high quality bases) assembled on 2006-04-19

> BO11133.5prime
GAAGTTATCAGTCGACATGGAACTTGCAGAGAAATCGACAGCAGCACCTG
GTGGTGCCACATCCTCCACTGCATCGAGTGCCGCTGGCAGTAAATCGGGA
TCCGGTTCCAGTGCTGGCAATGGTACTGGGGCCAACTCAAACAACAAGCA
GGCGACGCTGTCGCGAAATCTATGGGTTTCTGGGCTGTCCACTTTAACCC
GTGCCAGCGACCTTAAGGCAATCTTCTCCAAGTTTGGCAAGGTGATTGGG
GCCAAGGTGGTCACCAATACGCGTACTCCGGGCACTCGCTGCTACGGATA
CGTGACCATGTCCTCCTCGGCAGACGCCTCGCGTTGCATCGAAAATCTGC
ACCGCACCGAATTGCATGGACGCATCATTTCGGTGGAGCGTACCAAGAAC
GAGATTGGCGGCAGCTTGAATTCCAAAGAGGGCAAGGGCAAGGCTCCGGG
CGACGCCGGAAACAAGAAGAAGGAAGACGACAGTGGCAAAAAGTCTGGTA
GTGGCAAGGGCTCCAGCTCCAACAGTGGCGATGACAAGAAGGGCGGCGAT
GGAAACGGCGACAGCAAGTCTGTTGGTGGCGATTTAAAGCGTGATGGCAA
GGAGAGCAACAGGGCCCGCAGCCGTCGCAACGATGACCGGGGCAAGTCGT
TGGCAAGCCAGGATAGACCGCGCCACGATCGCGAGCGATCCGCANAGGGT
AGTCAGGATCATCGTTCGGGGCGCAATCCACGCGACGTCGACCGTGAGAT
TCAGCAGCGCCAGAGGGAGCGCGAGCGTCGTCAACGAGAGATGCTGTCCT
ACCAGAAGATACGTGAGGAGCGCGAGCGCCAGCGCCTTCG

BO11133.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6995-PA 2001 CG6995-RA 1..824 17..840 4101 99.8 Plus
CG6995-PC 1179 CG6995-RC 1..824 17..840 4101 99.8 Plus
CG6995-PB 2787 CG6995-RB 798..1610 28..840 4046 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Saf-B-RC 4332 CG6995-RC 1817..2642 15..840 4119 99.9 Plus
Saf-B-RA 4003 CG6995-RA 1817..2642 15..840 4119 99.9 Plus
Saf-B-RB 3124 CG6995-RB 951..1763 28..840 4054 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24819714..24820539 15..840 4119 99.9 Plus
Blast to na_te.dros performed on 2015-02-10 21:28:40 has no hits.

BO11133.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:54 Download gff for BO11133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6995-PA 1..824 17..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:46 Download gff for BO11133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6995-PC 1..824 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:29:43 Download gff for BO11133.5prime
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RA 1808..2642 5..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:36 Download gff for BO11133.5prime
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RA 1808..2642 5..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:36 Download gff for BO11133.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24819705..24820539 5..840 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:29:43 Download gff for BO11133.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20645427..20646261 5..840 99   Plus

BO11133.complete Sequence

1210 bp (1210 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ632006

> BO11133.complete
GAAGTTATCAGTCGACATGGAACTTGCAGAGAAATCGACAGCAGCACCTG
GTGGTGCCACATCCTCCACTGCATCGAGTGCCGCTGGCAGTAAATCGGGA
TCCGGTTCCAGTGCTGGCAATGGTACTGGGGCCAACTCAAACAACAAGCA
GGCGACGCTGTCGCGAAATCTATGGGTTTCTGGGCTGTCCACTTTAACCC
GTGCCAGCGACCTTAAGGCAATCTTCTCCAAGTTTGGCAAGGTGATTGGG
GCCAAGGTGGTCACCAATACGCGTACTCCGGGCACTCGCTGCTACGGATA
CGTGACCATGTCCTCCTCGGCAGACGCCTCGCGTTGCATCGAAAATCTGC
ACCGCACCGAATTGCATGGACGCATCATTTCGGTGGAGCGTACCAAGAAC
GAGATTGGCGGCAGCTTGAATTCCAAAGAGGGCAAGGGCAAGGCTCCGGG
CGACGCCGGAAACAAGAAGAAGGAAGACGACAGTGGCAAAAAGTCTGGTA
GTGGCAAGGGCTCCAGCTCCAACAGTGGCGATGACAAGAAGGGCGGCGAT
GGAAACGGCGACAGCAAGTCTGTTGGTGGCGATTTAAAGCGTGATGGCAA
GGAGAGCAACAGGGCCCGCAGCCGTCGCAACGATGACCGGGGCAAGTCGT
TGGCAAGCCAGGATAGACCGCGCCACGATCGCGAGCGATCCGCAAAGGGT
AGTCAGGATCATCGTTCGGGGCGCAATCCACGCGACGTCGACCGTGAGAT
TCAGCAGCGCCAGAGGGAGCGCGAGCGTCGTCAACGAGAGATGCTGTCCT
ACCAGAAGATACGTGAGGAGCGCGAGCGCCAGCGCCTTCGGGAAAGGGAG
CGTGAGCTGCGTGAGGAGGAGCGTCGCCGTCGGGAGGCCCGTGAGCGCCA
GCGAATCGAAGAGGAACGTCTGCAGGAAGAACGGCGCAAGCTCGCTGTGG
AGCGGGAACGGCTCGAGCGGGAGAAGGCCGAGCTTTTGCGGATGGAGCGC
GAGCGCCAGAAGCTGGAGAGAGAAAAAATCGAGCTGGAACGCCTCGAGCT
GAAGCGACAACAGATGAAGTATGCTAAAAAAAAAACCAAAACAGACCGTA
ATGCGTTGCACTCGTGCCAACGCAGAGGCGACAACACAGATATACCAATA
TATTTATTTTATACTCTCTCGGAAAGCATTTGTCCTTGTGATGCAAGCTT
TCTAGACCAT

BO11133.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Saf-B-RC 1179 CG6995-PC 1..1176 17..1192 5880 100 Plus
Saf-B-RA 2001 CG6995-PA 1..1053 17..1069 5265 100 Plus
Saf-B-RB 2787 CG6995-PB 798..1839 28..1069 5210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Saf-B-RC 4332 CG6995-RC 1817..2994 15..1192 5890 100 Plus
Saf-B-RA 4003 CG6995-RA 1817..2871 15..1069 5275 100 Plus
Saf-B-RB 3124 CG6995-RB 951..1992 28..1069 5210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24819714..24820891 15..1192 5890 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:00:38 has no hits.

BO11133.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:35 Download gff for BO11133.complete
Subject Subject Range Query Range Percent Splice Strand
CG6995-RC 1..1179 17..1193 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:27 Download gff for BO11133.complete
Subject Subject Range Query Range Percent Splice Strand
CG6995-RC 1018..2208 5..1198 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:36 Download gff for BO11133.complete
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RC 1819..2994 17..1194 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:35 Download gff for BO11133.complete
Subject Subject Range Query Range Percent Splice Strand
CG6995-RC 1018..2208 5..1198 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:32:50 Download gff for BO11133.complete
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RC 1819..2994 17..1194 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:32:50 Download gff for BO11133.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24819716..24820891 17..1194 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:36 Download gff for BO11133.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20645438..20646613 17..1194 99   Plus

BO11133.pep Sequence

Translation from 16 to 1210

> BO11133.pep
MELAEKSTAAPGGATSSTASSAAGSKSGSGSSAGNGTGANSNNKQATLSR
NLWVSGLSTLTRASDLKAIFSKFGKVIGAKVVTNTRTPGTRCYGYVTMSS
SADASRCIENLHRTELHGRIISVERTKNEIGGSLNSKEGKGKAPGDAGNK
KKEDDSGKKSGSGKGSSSNSGDDKKGGDGNGDSKSVGGDLKRDGKESNRA
RSRRNDDRGKSLASQDRPRHDRERSAKGSQDHRSGRNPRDVDREIQQRQR
ERERRQREMLSYQKIREERERQRLRERERELREEERRRREARERQRIEEE
RLQEERRKLAVERERLEREKAELLRMERERQKLEREKIELERLELKRQQM
KYAKKKTKTDRNALHSCQRRGDNTDIPIYLFYTLSESICPCDASFLDH

BO11133.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Saf-B-PC 392 CG6995-PC 1..392 1..392 1989 100 Plus
Saf-B-PA 666 CG6995-PA 1..377 1..375 1770 94.4 Plus
Saf-B-PB 928 CG6995-PB 267..639 5..375 1752 94.4 Plus
CG2839-PA 826 CG2839-PA 487..700 150..370 244 29 Plus
CG2839-PA 826 CG2839-PA 311..559 124..372 238 24.9 Plus
CG2839-PA 826 CG2839-PA 465..712 109..370 224 27.1 Plus
CG2839-PA 826 CG2839-PA 525..758 137..373 224 26.6 Plus
CG2839-PA 826 CG2839-PA 389..628 124..361 220 25.5 Plus
CG2839-PA 826 CG2839-PA 359..574 149..370 218 26.2 Plus
CG2839-PA 826 CG2839-PA 267..462 149..361 217 28.9 Plus
CG2839-PA 826 CG2839-PA 436..664 137..370 217 27.4 Plus
CG2839-PA 826 CG2839-PA 354..599 113..361 213 25.3 Plus
CG2839-PA 826 CG2839-PA 433..659 150..370 210 28.1 Plus
CG2839-PA 826 CG2839-PA 276..447 191..370 208 29.4 Plus
CG2839-PA 826 CG2839-PA 272..511 109..361 206 22.4 Plus
CG4119-PB 998 CG4119-PB 232..485 106..370 200 27.9 Plus
CG2839-PA 826 CG2839-PA 266..441 196..370 197 28.8 Plus
CG2839-PA 826 CG2839-PA 264..420 213..372 192 31.7 Plus