Clone Sequence Records
BO11136.3prime Sequence
866 bp (729 high quality bases) assembled on 2006-04-19
> BO11136.3prime
ATGGTCTAGAAAGCTTGCACACCAGCGAAAGGGGACCGCACGCGGCCGGT
CGGCTCCCTCCTTGACCAGCGGCTTGTGATATTCGCGTCCAGGTCGCGAA
TGGATGACGGCCCAACAGTGTTCGCAATAGTACTGCAGACAGGTGACATT
GGCGCAAAAGAAGGGCGCAAACTTGCCACCACAACGCTGACCCTCGCACT
CGTCGCACATCTGATCGTCCAGGACATAGGGCTTGACCTCCACCCGCTTG
TCTATATCGCCATGCTGCAGCTGCACAAATCTGGCTGAGATGGCCGCTAT
GTAGCTCTGCTGATTCGAGAAGGCCACACGTCCAGCGCCCTTTGGATACT
TTAATTCCGGATCGGTGTCAATTCCAGCATAGCATACTCCACCGTACAAT
CTATCCATGATCATTGCCAGTTCGAAGGCCTTCAGAGGACGTGGCACGCC
GCCCACAAACACCGTTTTGCGTGGGTCCAGTGACATGGTAGCATCAAGCA
CATAGTCCGCATCGGCCAGGCGCCAAGGACGAATCTGCACTGCCTTATCC
TTGATCGTCGGCGAAGAAACGCATAGATACAGCTTGTCCTCATCCGTGAT
GCACGAGTCAATTAGCTGCTGCACACTGCTCTCGTCCTGGAACAGCAGGA
AGGCATATCCCTTGGGCGGAAAATACGACTTGGATTCCGCCTTGTGTGGC
CAATCGACGACCAATGGCCCGAAGCGCCGAAACGAAGTGGTAATCTCATC
CTCATCGATGTCCGGTGGCAGACCGCCAACGAATACCTTCCGGGAGAAGC
GAGCCGTGCCATCGCCGACGTTTCCTCCATTTCCGCCCTGGATGGGTGAG
TGCGGCGAGTGTGGAG
BO11136.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5735-PD | 2115 | orb2-RD | 1265..2112 | 866..19 | 4240 | 100 | Minus |
| CG5735-PB | 2115 | orb2-RB | 1265..2112 | 866..19 | 4240 | 100 | Minus |
| CG5735-PC | 2115 | orb2-RC | 1265..2112 | 866..19 | 4240 | 100 | Minus |
| CG5735-PA | 1656 | orb2-RA | 806..1653 | 866..19 | 4240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb2-RB | 3116 | CG43782-RB | 1686..2533 | 866..19 | 4240 | 100 | Minus |
| orb2-RH | 8400 | CG43782-RH | 1759..2606 | 866..19 | 4240 | 100 | Minus |
| orb2-RA | 2098 | CG43782-RA | 856..1703 | 866..19 | 4240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8942894..8943741 | 19..866 | 4240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:47:09 has no hits.
BO11136.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:58:59 Download gff for
BO11136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-PA | 806..1656 | 15..866 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:53 Download gff for
BO11136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5735-PA | 806..1656 | 15..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:49:56 Download gff for
BO11136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RA | 856..1706 | 15..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:23:14 Download gff for
BO11136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RA | 856..1706 | 15..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:23:14 Download gff for
BO11136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8942896..8943741 | 19..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:49:56 Download gff for
BO11136.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8935996..8936841 | 19..866 | 99 | | Plus |
BO11136.5prime Sequence
897 bp (796 high quality bases) assembled on 2006-04-19
> BO11136.5prime
GAAGTTATCAGTCGACATGGACTCGCTCAAGTTACCAAAGGCCAACAGTG
CCACCAGCAGTGCCAGCGGCAGCAACAGCAACCTGTCCGGTTCGACTTCC
GCGTCCGCATCCGCAGCCACATCGCCTACATCGTCAGGAACTGCAGTGGG
TGGCATTCTATCCGGTGCCCCAAAATCGCCACCTGGCCTGGGCAGCAGCA
CCCCGATCTCGGTGCGATTCAATGCCAACGAGGAGTCCCTGGACGACATC
CTACAGTCCTTCCATCACAGCAAGCATAGTCCCAGTGGAGGAGCGAGTGG
CGGCGGAGATGCCTCGCCCACATCGAATCTGCTCGGGATGAAGAACAACG
GGCTGGGATTGGTCGTGGGCAACTGTGACTCCCTCTCCAGCAGTCCATCG
CAGCCCCAGATGCATGCCGGATCCGCATCCCTCTTCGGCAACGACGAAGT
TAGTCTGCGCAATAATTTCATGCAAGCCGGTGGTTTCTTCAATCGAAAAA
GTTGCGGTGGCCTGCCGAATCTCAATCTCAACAAGCCGCCCCAGCTCCAC
CAGCAACAGCATCAACAACAGCATCAGCAGCACCAGCAACATCAACAGCA
GCAACAGCTCCATCAGCACCAACAGCAACTGTCGCCGAATCTGAGTGCCC
TGCACCATCATCACCAGCAGCAGCAGCAGCTTCGGGAAAGCGGAGGATCA
CATAGCCCCTCGTCGCCGGGTGGAGGAGGCGGAGGATCGCCGTACAACGG
CTCTCAGGCGGGCTGCAGCAGCGGCGGCATCTCGCCCATTCCTCCCCAGA
TGGGCGTGTCGCCCAAATACCGTCGCAGCATATCCTTTCCCATCAAGGGC
AACTCGCCCACAGCTATCTATGGGAATATGCACATGGACGGGATGGG
BO11136.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5735-PD | 2115 | orb2-RD | 1..881 | 17..897 | 4355 | 99.7 | Plus |
| CG5735-PB | 2115 | orb2-RB | 1..881 | 17..897 | 4355 | 99.7 | Plus |
| CG5735-PC | 2115 | orb2-RC | 1..881 | 17..897 | 4355 | 99.7 | Plus |
| CG5735-PA | 1656 | orb2-RA | 27..422 | 502..897 | 1930 | 99.4 | Plus |
| CG5488-PA | 1938 | B-H2-RA | 349..376 | 653..680 | 140 | 100 | Plus |
| CG7835-PA | 492 | CG7835-RA | 120..146 | 656..682 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb2-RB | 3116 | CG43782-RB | 421..1302 | 16..897 | 4380 | 99.8 | Plus |
| orb2-RH | 8400 | CG43782-RH | 494..1375 | 16..897 | 4380 | 99.8 | Plus |
| orb2-RC | 4187 | CG43782-RC | 494..1375 | 16..897 | 4380 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8948883..8949281 | 439..41 | 1995 | 100 | Minus |
| 3L | 28110227 | 3L | 8944125..8944522 | 897..500 | 1960 | 99.5 | Minus |
| 3L | 28110227 | 3L | 8947828..8947889 | 501..440 | 310 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6882 | 542..700 | 343 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2517 | 529..683 | 330 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2469 | 529..680 | 327 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6911 | 529..680 | 316 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2427 | 553..680 | 257 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 579..680 | 212 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2835..2979 | 536..680 | 211 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1163 | 573..677 | 192 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 566..685 | 191 | 64.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1154 | 581..680 | 167 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6814 | 43..146 | 155 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 610..680 | 139 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6891 | 52..145 | 139 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6838 | 43..146 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6856 | 43..146 | 128 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2449 | 43..145 | 123 | 59.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3141..3309 | 506..680 | 122 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6877 | 43..146 | 119 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2456 | 43..146 | 119 | 58.7 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 635..728 | 686..590 | 117 | 60.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2430 | 52..141 | 112 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1572 | 623..680 | 111 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2364 | 650..680 | 110 | 83.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1142 | 43..82 | 110 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2377 | 650..700 | 108 | 73.1 | Plus |
BO11136.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:00 Download gff for
BO11136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-PD | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:19:54 Download gff for
BO11136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5735-PC | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:48 Download gff for
BO11136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 491..1375 | 13..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:44 Download gff for
BO11136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 491..1375 | 13..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:44 Download gff for
BO11136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8949657..8949685 | 13..41 | 96 | | Minus |
| 3L | 8947828..8947889 | 440..501 | 100 | <- | Minus |
| 3L | 8948883..8949280 | 42..439 | 100 | <- | Minus |
| 3L | 8944125..8944520 | 502..897 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:48 Download gff for
BO11136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8937225..8937620 | 502..897 | 99 | <- | Minus |
| arm_3L | 8940928..8940989 | 440..501 | 100 | <- | Minus |
| arm_3L | 8941983..8942380 | 42..439 | 100 | <- | Minus |
| arm_3L | 8942757..8942785 | 13..41 | 96 | | Minus |
BO11136.complete Sequence
2146 bp (2146 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ632008
> BO11136.complete
GAAGTTATCAGTCGACATGGACTCGCTCAAGTTACCAAAGGCCAACAGTG
CCACCAGCAGTGCCAGCGGCAGCAACAGCAACCTGTCCGGTTCGACTTCC
GCGTCCGCATCCGCAGCCACATCGCCTACATCGTCAGGAACTGCAGTGGG
TGGCATTCTATCCGGTGCCCCAAAATCGCCACCTGGCCTGGGCAGCAGCA
CCCCGATCTCGGTGCGATTCAATGCCAACGAGGAGTCCCTGGACGACATC
CTACAGTCCTTCCATCACAGCAAGCATAGTCCCAGTGGAGGAGCGAGTGG
CGGCGGAGATGCCTCGCCCACATCGAATCTGCTCGGGATGAAGAACAACG
GGCTGGGATTGGTCGTGGGCAACTGTGACTCCCTCTCCAGCAGTCCATCG
CAGCCCCAGATGCATGCCGGATCCGCATCCCTCTTCGGCAACGACGAAGT
TAGTCTGCGCAATAATTTCATGCAAGCCGGTGGTTTCTTCAATCGAAAAA
GTTGCGGTGGCCTGCCGAATCTCAATCTCAACAAGCCGCCCCAGCTCCAC
CAGCAACAGCATCAACAACAGCATCAGCAGCACCAGCAACATCAACAGCA
GCAACAGCTCCATCAGCACCAACAGCAACTGTCGCCGAATCTGAGTGCCC
TGCACCATCATCACCAGCAGCAGCAGCAGCTTCGGGAAAGCGGAGGATCA
CATAGCCCCTCGTCGCCGGGTGGAGGAGGCGGAGGATCGCCGTACAACGG
CTCTCAGGCGGGCTGCAGCAGCGGCGGCATCTCGCCCATTCCTCCCCAGA
TGGGCGTGTCGCCCAAATACCGTCGCAGCATATCCTTTCCCATCAAGGGC
AACTCGCCCACAGCTATCTATGGCAATATGCACATGGACGGCATGGGTAG
TGGGCACATGAATATACCGACACTTTCGATTGGAAACGGTGGTGGTGGCG
GATCTACTGGCATGGTCTCAGCCGGAGCAACTGGTGGCGGAGATGCGCCC
TATTTGGGCAACAGCTATGGCAACATGATGACGTCCAATGGACAAATGCA
CCACGGTGGCGGCTTGGATAACTCACTGTGCGATTATATGCGCAACATGT
CGCTGGGTGGAAATGGTGGTGGCGATGGCAGCAACAGCATGTCTTTAATG
CAGGACAGGATGCGTGTGATGGGCGGTCCGAAGCATCTGAGCGAGGCCGA
TGCTATGGCCATAGCAGCCAGTGGAAATGATCCATCCGTCTACTTAAATG
CCCTCAAAATGGGTTCGCCATCGAGGCTCTCTCCACACTCGCCGCACTCA
CCCATCCAGGGCGGAAATGGAGGAAACGTCGGCGATGGCACGGCTCGCTT
CTCCCGGAAGGTATTCGTTGGCGGTCTGCCACCGGACATCGATGAGGATG
AGATTACCACTTCGTTTCGGCGCTTCGGGCCATTGGTCGTCGATTGGCCA
CACAAGGCGGAATCCAAGTCGTATTTTCCGCCCAAGGGATATGCCTTCCT
GCTGTTCCAGGACGAGAGCAGTGTGCAGCAGCTAATTGACTCGTGCATCA
CGGATGAGGACAAGCTGTATCTATGCGTTTCTTCGCCGACGATCAAGGAT
AAGGCAGTGCAGATTCGTCCTTGGCGCCTGGCCGATGCGGACTATGTGCT
TGATGCTACCATGTCACTGGACCCACGCAAAACGGTGTTTGTGGGCGGCG
TGCCACGTCCTCTGAAGGCCTTCGAACTGGCAATGATCATGGATAGATTG
TACGGTGGAGTATGCTATGCTGGAATTGACACCGATCCGGAATTAAAGTA
TCCAAAGGGCGCTGGACGTGTGGCCTTCTCGAATCAGCAGAGCTACATAG
CGGCCATCTCAGCCAGATTTGTGCAGCTGCAGCATGGCGATATAGACAAG
CGGGTGGAGGTCAAGCCCTATGTCCTGGACGATCAGATGTGCGACGAGTG
CGAGGGTCAGCGTTGTGGTGGCAAGTTTGCGCCCTTCTTTTGCGCCAATG
TCACCTGTCTGCAGTACTATTGCGAACACTGTTGGGCCGTCATCCATTCG
CGACCTGGACGCGAATATCACAAGCCGCTGGTCAAGGAGGGAGCCGACCG
GCCGCGTGCGGTCCCCTTTCGCTGGTGTGCAAGCTTTCTAGACCAT
BO11136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb2-RB | 2115 | CG43782-PB | 1..2112 | 17..2128 | 10560 | 100 | Plus |
| orb2-RH | 2115 | CG43782-PH | 1..2112 | 17..2128 | 10560 | 100 | Plus |
| orb2-RC | 2115 | CG43782-PC | 1..2112 | 17..2128 | 10560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb2-RB | 3116 | CG43782-RB | 421..2533 | 16..2128 | 10565 | 100 | Plus |
| orb2-RH | 8400 | CG43782-RH | 494..2606 | 16..2128 | 10565 | 100 | Plus |
| orb2-RC | 4187 | CG43782-RC | 494..2606 | 16..2128 | 10565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8942894..8944522 | 2128..500 | 8145 | 100 | Minus |
| 3L | 28110227 | 3L | 8948883..8949281 | 439..41 | 1995 | 100 | Minus |
| 3L | 28110227 | 3L | 8947828..8947889 | 501..440 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6882 | 542..700 | 343 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2517 | 529..683 | 330 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2469 | 529..680 | 327 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6911 | 529..680 | 316 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2427 | 553..680 | 257 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 579..680 | 212 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2835..2979 | 536..680 | 211 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1163 | 573..677 | 192 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 566..685 | 191 | 64.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1154 | 581..680 | 167 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6814 | 43..146 | 155 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 610..680 | 139 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6891 | 52..145 | 139 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6838 | 43..146 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6856 | 43..146 | 128 | 59.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3141..3309 | 506..680 | 122 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2456 | 43..146 | 119 | 58.7 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 635..728 | 686..590 | 117 | 60.8 | Minus |
BO11136.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:15 Download gff for
BO11136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 1..2115 | 17..2132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:55 Download gff for
BO11136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 490..2608 | 13..2132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:33 Download gff for
BO11136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 495..2606 | 17..2130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:16 Download gff for
BO11136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 490..2608 | 13..2132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:50 Download gff for
BO11136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 495..2606 | 17..2130 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:50 Download gff for
BO11136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8948883..8949280 | 42..439 | 100 | <- | Minus |
| 3L | 8949657..8949681 | 17..41 | 100 | | Minus |
| 3L | 8942892..8944520 | 502..2130 | 99 | <- | Minus |
| 3L | 8947828..8947889 | 440..501 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:33 Download gff for
BO11136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8935992..8937620 | 502..2130 | 99 | <- | Minus |
| arm_3L | 8940928..8940989 | 440..501 | 100 | <- | Minus |
| arm_3L | 8941983..8942380 | 42..439 | 100 | <- | Minus |
| arm_3L | 8942757..8942781 | 17..41 | 100 | | Minus |
BO11136.pep Sequence
Translation from 16 to 2146
> BO11136.pep
MDSLKLPKANSATSSASGSNSNLSGSTSASASAATSPTSSGTAVGGILSG
APKSPPGLGSSTPISVRFNANEESLDDILQSFHHSKHSPSGGASGGGDAS
PTSNLLGMKNNGLGLVVGNCDSLSSSPSQPQMHAGSASLFGNDEVSLRNN
FMQAGGFFNRKSCGGLPNLNLNKPPQLHQQQHQQQHQQHQQHQQQQQLHQ
HQQQLSPNLSALHHHHQQQQQLRESGGSHSPSSPGGGGGGSPYNGSQAGC
SSGGISPIPPQMGVSPKYRRSISFPIKGNSPTAIYGNMHMDGMGSGHMNI
PTLSIGNGGGGGSTGMVSAGATGGGDAPYLGNSYGNMMTSNGQMHHGGGL
DNSLCDYMRNMSLGGNGGGDGSNSMSLMQDRMRVMGGPKHLSEADAMAIA
ASGNDPSVYLNALKMGSPSRLSPHSPHSPIQGGNGGNVGDGTARFSRKVF
VGGLPPDIDEDEITTSFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQDE
SSVQQLIDSCITDEDKLYLCVSSPTIKDKAVQIRPWRLADADYVLDATMS
LDPRKTVFVGGVPRPLKAFELAMIMDRLYGGVCYAGIDTDPELKYPKGAG
RVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECEGQRC
GGKFAPFFCANVTCLQYYCEHCWAVIHSRPGREYHKPLVKEGADRPRAVP
FRWCASFLDH
BO11136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb2-PB | 704 | CG43782-PB | 1..704 | 1..704 | 3772 | 100 | Plus |
| orb2-PH | 704 | CG43782-PH | 1..704 | 1..704 | 3772 | 100 | Plus |
| orb2-PC | 704 | CG43782-PC | 1..704 | 1..704 | 3772 | 100 | Plus |
| orb2-PD | 704 | CG43782-PD | 1..704 | 1..704 | 3772 | 100 | Plus |
| orb2-PA | 551 | CG43782-PA | 10..551 | 163..704 | 2954 | 100 | Plus |
