Clone BO11139 Report

Search the DGRC for BO11139

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:111
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlT-RA
Protein status:BO11139.pep: validated full length
Sequenced Size:892

Clone Sequence Records

BO11139.5prime Sequence

756 bp (679 high quality bases) assembled on 2006-04-19

> BO11139.5prime
GAAGTTATCAGTCGACATGAAAGCCTTCATCCTAATGTCCTGCCTGGCGC
TGGCCGCCGCTCGTCCTGAAGCCGGATACAACTACAACCGTCCTGGTGGC
GGCGGTGGCTCTGGCGGCGGCTCCGGCGGTGGCCTGGGCGGTGGATTCGG
AGGTGGCTCCAGCGGCGGCTTCGGCGGCGGTATTGGTGGAGGATTCGGTG
GTGGATTCGGCGGTGGCAGCGGCGGAGGAGGATTCAGCAGCGGCGGAGGC
GGTGGCTTCAGCAGCGGCGGTGGTGGAGGCGGAGGCGGTGGATTCGGCGG
TGGATTCGGAGGCGGCTCCGGCGGCGGCTCCGGCGGCGGTTTCGGCGGAG
GTGGCAGCATTGGCGGATTCGGAGGCGGCGGCGGTGGTGGTGGTGGCACC
ACCTTGGTGCAAAAGCACATCTACGTGCACGTGCCACCACCAGAGCAGGA
AGAAGTGCGCCAGCGCCCTAACCTGCCCATTGGCCAGTCCCAGAAGCACT
ACAAGATCATCTTCATCAAGGCCCCATCGCCACCATCGTACCAGGCTCCG
GTCATTCCCCTGCAGCCTCAGAACGAGGAGAAGACTCTGGTCTACGTGCT
GGTGAAGAAGCCCGAGGATCAGCAGGACATTGTCATCCCCACGCCCGCAC
CCACGCAGCCATCGAAGCCCGAGGTGTACTTCATCAAGTACAAGACCCAG
AAGGATTCCAGCGGCATTTCTGGAGGAATCTCCGGCTCCACTGGTGGCTT
CACCCA

BO11139.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5812-PA 861 GCR(ich)-RA 1..740 17..756 3675 99.8 Plus
CG14254-PA 1083 CG14254-RA 638..686 657..705 170 93.8 Plus
CG8986-PA 597 CG8986-RA 293..323 492..522 155 100 Plus
CG14534-PA 594 CG14534-RA 265..309 491..535 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlT-RA 1607 CG5812-RA 190..930 16..756 3690 99.9 Plus
lectin-28C-RC 3044 CG7106-RC 1609..1823 705..491 410 80.7 Minus
TwdlE-RA 1346 CG14534-RA 404..618 491..705 410 80.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27049920..27050327 349..756 2025 99.8 Plus
3R 32079331 3R 27049511..27049848 16..353 1690 100 Plus
3R 32079331 3R 26995698..26995834 569..705 370 84.7 Plus
2L 23513712 2L 7858685..7858899 705..491 370 78.1 Minus
X 23542271 X 16735536..16735594 639..697 205 89.8 Plus
Blast to na_te.dros performed on 2015-02-13 08:51:19 has no hits.

BO11139.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:06 Download gff for BO11139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5812-PA 1..739 17..755 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:03 Download gff for BO11139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5812-PA 1..739 17..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:25 Download gff for BO11139.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 185..929 8..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:42:05 Download gff for BO11139.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 185..929 8..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:42:05 Download gff for BO11139.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27049506..27049845 8..350 99 -> Plus
3R 27049922..27050326 351..755 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:25 Download gff for BO11139.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22875228..22875567 8..350 99 -> Plus
arm_3R 22875644..22876048 351..755 99   Plus

BO11139.3prime Sequence

834 bp (753 high quality bases) assembled on 2006-04-19

> BO11139.3prime
ATGGTCTAGAAAGCTTGCGTAGGGTCCGGACTTTCCAGGTGGTCCGTAGT
TGCTGGACGGGGCCGAGATGGAGCCGCTGTCTCCACCAGTGAAGCCACCA
TCGCCGCCAGAGGTGTAACCATTGCCGGTGTTGGTCTGGGTGAAGCCACC
AGTGGAGCCGGAGATTCCTCCAGAAATGCCGCTGGAATCCTTCTGGGTCT
TGTACTTGATGAAGTACACCTCGGGCTTCGATGGCTGCGTGGGTGCGGGC
GTGGGGATGACAATGTCCTGCTGATCCTCGGGCTTCTTCACCAGCACGTA
GACCAGAGTCTTCTCCTCGTTCTGAGGCTGCAGGGGAATGACCGGAGCCT
GGTACGATGGTGGCGATGGGGCCTTGATGAAGATGATCTTGTAGTGCTTC
TGGGACTGGCCAATGGGCAGGTTAGGGCGCTGGCGCACTTCTTCCTGCTC
TGGTGGTGGCACGTGCACGTAGATGTGCTTCTGCACCAAGGTGGTGCCAC
CACCACCACCGCCGCCGCCTCCGAATCCGCCAATGCTGCCACCTCCGCCG
AAACCGCCGCCGGAGCCGCCGCCGGAGCCGCCTCCGAATCCACCGCCGAA
TCCACCGCCTCCGCCTCCACCACCGCCGCTGCTGAAGCCACCGCCTCCGC
CGCTGCTGAATCCTCCTCCGCCGCTGCCACCGCCGAATCCACCACCGAAT
CCTCCACCAATACCGCCGCCGAAGCCGCCGCTGGAGCCACCTCCGAATCC
ACCGCCCAGGCCACCGCCGGAGCCGCCGCCAGAGCCACCGCCGCCACCAG
GACGGTTGTAGTTGTATCGGGCTTCAGGACGAGC

BO11139.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5812-PA 861 GCR(ich)-RA 43..858 834..19 4055 99.8 Minus
CG14254-PA 1083 CG14254-RA 638..686 236..188 170 93.8 Minus
CG8986-PA 597 CG8986-RA 293..323 401..371 155 100 Minus
CG14534-PA 594 CG14534-RA 265..309 402..358 150 93.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlT-RA 1607 CG5812-RA 233..1048 834..19 4065 99.9 Minus
lectin-28C-RC 3044 CG7106-RC 1609..1823 188..402 410 80.7 Plus
TwdlE-RA 1346 CG14534-RA 404..618 402..188 410 80.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27049920..27050445 544..19 2630 100 Minus
3R 32079331 3R 27049554..27049848 834..540 1460 99.7 Minus
3R 32079331 3R 26995698..26995834 324..188 370 84.7 Minus
2L 23513712 2L 7858685..7858899 188..402 370 78.1 Plus
X 23542271 X 16735536..16735594 254..196 205 89.8 Minus
Blast to na_te.dros performed on 2015-02-12 05:02:19 has no hits.

BO11139.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:05 Download gff for BO11139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5812-PA 43..861 15..834 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:02 Download gff for BO11139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5812-PA 43..861 15..834 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:30:29 Download gff for BO11139.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 233..1051 15..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:49 Download gff for BO11139.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 233..1051 15..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:49 Download gff for BO11139.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27049554..27049845 543..834 99 -> Minus
3R 27049922..27050448 15..542 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:30:29 Download gff for BO11139.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22875276..22875567 543..834 99 -> Minus
arm_3R 22875644..22876170 15..542 99   Minus

BO11139.complete Sequence

892 bp (892 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ632009

> BO11139.complete
GAAGTTATCAGTCGACATGAAAGCCTTCATCCTAATGTCCTGCCTGGCGC
TGGCCGCCGCTCGTCCTGAAGCCGGATACAACTACAACCGTCCTGGTGGC
GGCGGTGGCTCTGGCGGCGGCTCCGGCGGTGGCCTGGGCGGTGGATTCGG
AGGTGGCTCCAGCGGCGGCTTCGGCGGCGGTATTGGTGGAGGATTCGGTG
GTGGATTCGGCGGTGGCAGCGGCGGAGGAGGATTCAGCAGCGGCGGAGGC
GGTGGCTTCAGCAGCGGCGGTGGTGGAGGCGGAGGCGGTGGATTCGGCGG
TGGATTCGGAGGCGGCTCCGGCGGCGGCTCCGGCGGCGGTTTCGGCGGAG
GTGGCAGCATTGGCGGATTCGGAGGCGGCGGCGGTGGTGGTGGTGGCACC
ACCTTGGTGCAGAAGCACATCTACGTGCACGTGCCACCACCAGAGCAGGA
AGAAGTGCGCCAGCGCCCTAACCTGCCCATTGGCCAGTCCCAGAAGCACT
ACAAGATCATCTTCATCAAGGCCCCATCGCCACCATCGTACCAGGCTCCG
GTCATTCCCCTGCAGCCTCAGAACGAGGAGAAGACTCTGGTCTACGTGCT
GGTGAAGAAGCCCGAGGATCAGCAGGACATTGTCATCCCCACGCCCGCAC
CCACGCAGCCATCGAAGCCCGAGGTGTACTTCATCAAGTACAAGACCCAG
AAGGATTCCAGCGGCATTTCTGGAGGAATCTCCGGCTCCACTGGTGGCTT
CACCCAGACCAACACCGGCAATGGTTACACCTCTGGCGGCGATGGTGGCT
TCACTGGTGGAGACAGCGGCTCCATCTCGGCCCCGTCCAGCAACTACGGA
CCACCTGGAAAGTCCGGACCCTACGCAAGCTTTCTAGACCAT

BO11139.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlT-RA 861 CG5812-PA 1..858 17..874 4290 100 Plus
TwdlC-RA 1083 CG14254-PA 550..686 569..705 370 84.7 Plus
TwdlE-RA 594 CG14534-PA 265..479 491..705 370 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlT-RA 1607 CG5812-RA 190..1048 16..874 4295 100 Plus
lectin-28C-RC 3044 CG7106-RC 1609..1823 705..491 370 78.1 Minus
TwdlC-RA 1396 CG14254-RA 652..788 569..705 370 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27049920..27050445 349..874 2630 100 Plus
3R 32079331 3R 27049511..27049848 16..353 1690 100 Plus
3R 32079331 3R 26995698..26995834 569..705 370 84.7 Plus
2L 23513712 2L 7858685..7858899 705..491 370 78.1 Minus
X 23542271 X 16735536..16735594 639..697 205 89.8 Plus
Blast to na_te.dros performed on 2014-11-26 15:56:22 has no hits.

BO11139.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:36 Download gff for BO11139.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 1..861 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:28 Download gff for BO11139.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 180..1046 8..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:28 Download gff for BO11139.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 191..1048 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:36 Download gff for BO11139.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 180..1046 8..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:15 Download gff for BO11139.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 191..1048 17..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:15 Download gff for BO11139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27049512..27049845 17..350 100 -> Plus
3R 27049922..27050445 351..876 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:28 Download gff for BO11139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22875234..22875567 17..350 100 -> Plus
arm_3R 22875644..22876167 351..876 99   Plus

BO11139.pep Sequence

Translation from 16 to 892

> BO11139.pep
MKAFILMSCLALAAARPEAGYNYNRPGGGGGSGGGSGGGLGGGFGGGSSG
GFGGGIGGGFGGGFGGGSGGGGFSSGGGGGFSSGGGGGGGGGFGGGFGGG
SGGGSGGGFGGGGSIGGFGGGGGGGGGTTLVQKHIYVHVPPPEQEEVRQR
PNLPIGQSQKHYKIIFIKAPSPPSYQAPVIPLQPQNEEKTLVYVLVKKPE
DQQDIVIPTPAPTQPSKPEVYFIKYKTQKDSSGISGGISGSTGGFTQTNT
GNGYTSGGDGGFTGGDSGSISAPSSNYGPPGKSGPYASFLDH

BO11139.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlT-PA 286 CG5812-PA 1..286 1..286 1561 100 Plus
TwdlE-PA 197 CG14534-PA 40..163 113..233 403 63.7 Plus
TwdlC-PA 360 CG14254-PA 117..235 121..236 378 62.2 Plus
Twdlalpha-PA 388 CG32574-PA 1..347 1..278 348 32.6 Plus
CG13376-PB 200 CG13376-PB 1..169 1..135 335 50.3 Plus