Clone Sequence Records
BO11139.5prime Sequence
756 bp (679 high quality bases) assembled on 2006-04-19
> BO11139.5prime
GAAGTTATCAGTCGACATGAAAGCCTTCATCCTAATGTCCTGCCTGGCGC
TGGCCGCCGCTCGTCCTGAAGCCGGATACAACTACAACCGTCCTGGTGGC
GGCGGTGGCTCTGGCGGCGGCTCCGGCGGTGGCCTGGGCGGTGGATTCGG
AGGTGGCTCCAGCGGCGGCTTCGGCGGCGGTATTGGTGGAGGATTCGGTG
GTGGATTCGGCGGTGGCAGCGGCGGAGGAGGATTCAGCAGCGGCGGAGGC
GGTGGCTTCAGCAGCGGCGGTGGTGGAGGCGGAGGCGGTGGATTCGGCGG
TGGATTCGGAGGCGGCTCCGGCGGCGGCTCCGGCGGCGGTTTCGGCGGAG
GTGGCAGCATTGGCGGATTCGGAGGCGGCGGCGGTGGTGGTGGTGGCACC
ACCTTGGTGCAAAAGCACATCTACGTGCACGTGCCACCACCAGAGCAGGA
AGAAGTGCGCCAGCGCCCTAACCTGCCCATTGGCCAGTCCCAGAAGCACT
ACAAGATCATCTTCATCAAGGCCCCATCGCCACCATCGTACCAGGCTCCG
GTCATTCCCCTGCAGCCTCAGAACGAGGAGAAGACTCTGGTCTACGTGCT
GGTGAAGAAGCCCGAGGATCAGCAGGACATTGTCATCCCCACGCCCGCAC
CCACGCAGCCATCGAAGCCCGAGGTGTACTTCATCAAGTACAAGACCCAG
AAGGATTCCAGCGGCATTTCTGGAGGAATCTCCGGCTCCACTGGTGGCTT
CACCCA
BO11139.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5812-PA | 861 | GCR(ich)-RA | 1..740 | 17..756 | 3675 | 99.8 | Plus |
CG14254-PA | 1083 | CG14254-RA | 638..686 | 657..705 | 170 | 93.8 | Plus |
CG8986-PA | 597 | CG8986-RA | 293..323 | 492..522 | 155 | 100 | Plus |
CG14534-PA | 594 | CG14534-RA | 265..309 | 491..535 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlT-RA | 1607 | CG5812-RA | 190..930 | 16..756 | 3690 | 99.9 | Plus |
lectin-28C-RC | 3044 | CG7106-RC | 1609..1823 | 705..491 | 410 | 80.7 | Minus |
TwdlE-RA | 1346 | CG14534-RA | 404..618 | 491..705 | 410 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27049920..27050327 | 349..756 | 2025 | 99.8 | Plus |
3R | 32079331 | 3R | 27049511..27049848 | 16..353 | 1690 | 100 | Plus |
3R | 32079331 | 3R | 26995698..26995834 | 569..705 | 370 | 84.7 | Plus |
2L | 23513712 | 2L | 7858685..7858899 | 705..491 | 370 | 78.1 | Minus |
X | 23542271 | X | 16735536..16735594 | 639..697 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:51:19 has no hits.
BO11139.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:06 Download gff for
BO11139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5812-PA | 1..739 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:03 Download gff for
BO11139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5812-PA | 1..739 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:25 Download gff for
BO11139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 185..929 | 8..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:42:05 Download gff for
BO11139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 185..929 | 8..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:42:05 Download gff for
BO11139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27049506..27049845 | 8..350 | 99 | -> | Plus |
3R | 27049922..27050326 | 351..755 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:25 Download gff for
BO11139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22875228..22875567 | 8..350 | 99 | -> | Plus |
arm_3R | 22875644..22876048 | 351..755 | 99 | | Plus |
BO11139.3prime Sequence
834 bp (753 high quality bases) assembled on 2006-04-19
> BO11139.3prime
ATGGTCTAGAAAGCTTGCGTAGGGTCCGGACTTTCCAGGTGGTCCGTAGT
TGCTGGACGGGGCCGAGATGGAGCCGCTGTCTCCACCAGTGAAGCCACCA
TCGCCGCCAGAGGTGTAACCATTGCCGGTGTTGGTCTGGGTGAAGCCACC
AGTGGAGCCGGAGATTCCTCCAGAAATGCCGCTGGAATCCTTCTGGGTCT
TGTACTTGATGAAGTACACCTCGGGCTTCGATGGCTGCGTGGGTGCGGGC
GTGGGGATGACAATGTCCTGCTGATCCTCGGGCTTCTTCACCAGCACGTA
GACCAGAGTCTTCTCCTCGTTCTGAGGCTGCAGGGGAATGACCGGAGCCT
GGTACGATGGTGGCGATGGGGCCTTGATGAAGATGATCTTGTAGTGCTTC
TGGGACTGGCCAATGGGCAGGTTAGGGCGCTGGCGCACTTCTTCCTGCTC
TGGTGGTGGCACGTGCACGTAGATGTGCTTCTGCACCAAGGTGGTGCCAC
CACCACCACCGCCGCCGCCTCCGAATCCGCCAATGCTGCCACCTCCGCCG
AAACCGCCGCCGGAGCCGCCGCCGGAGCCGCCTCCGAATCCACCGCCGAA
TCCACCGCCTCCGCCTCCACCACCGCCGCTGCTGAAGCCACCGCCTCCGC
CGCTGCTGAATCCTCCTCCGCCGCTGCCACCGCCGAATCCACCACCGAAT
CCTCCACCAATACCGCCGCCGAAGCCGCCGCTGGAGCCACCTCCGAATCC
ACCGCCCAGGCCACCGCCGGAGCCGCCGCCAGAGCCACCGCCGCCACCAG
GACGGTTGTAGTTGTATCGGGCTTCAGGACGAGC
BO11139.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5812-PA | 861 | GCR(ich)-RA | 43..858 | 834..19 | 4055 | 99.8 | Minus |
CG14254-PA | 1083 | CG14254-RA | 638..686 | 236..188 | 170 | 93.8 | Minus |
CG8986-PA | 597 | CG8986-RA | 293..323 | 401..371 | 155 | 100 | Minus |
CG14534-PA | 594 | CG14534-RA | 265..309 | 402..358 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlT-RA | 1607 | CG5812-RA | 233..1048 | 834..19 | 4065 | 99.9 | Minus |
lectin-28C-RC | 3044 | CG7106-RC | 1609..1823 | 188..402 | 410 | 80.7 | Plus |
TwdlE-RA | 1346 | CG14534-RA | 404..618 | 402..188 | 410 | 80.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27049920..27050445 | 544..19 | 2630 | 100 | Minus |
3R | 32079331 | 3R | 27049554..27049848 | 834..540 | 1460 | 99.7 | Minus |
3R | 32079331 | 3R | 26995698..26995834 | 324..188 | 370 | 84.7 | Minus |
2L | 23513712 | 2L | 7858685..7858899 | 188..402 | 370 | 78.1 | Plus |
X | 23542271 | X | 16735536..16735594 | 254..196 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:02:19 has no hits.
BO11139.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:05 Download gff for
BO11139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5812-PA | 43..861 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:02 Download gff for
BO11139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5812-PA | 43..861 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:30:29 Download gff for
BO11139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 233..1051 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:49 Download gff for
BO11139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 233..1051 | 15..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:49 Download gff for
BO11139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27049554..27049845 | 543..834 | 99 | -> | Minus |
3R | 27049922..27050448 | 15..542 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:30:29 Download gff for
BO11139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22875276..22875567 | 543..834 | 99 | -> | Minus |
arm_3R | 22875644..22876170 | 15..542 | 99 | | Minus |
BO11139.complete Sequence
892 bp (892 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ632009
> BO11139.complete
GAAGTTATCAGTCGACATGAAAGCCTTCATCCTAATGTCCTGCCTGGCGC
TGGCCGCCGCTCGTCCTGAAGCCGGATACAACTACAACCGTCCTGGTGGC
GGCGGTGGCTCTGGCGGCGGCTCCGGCGGTGGCCTGGGCGGTGGATTCGG
AGGTGGCTCCAGCGGCGGCTTCGGCGGCGGTATTGGTGGAGGATTCGGTG
GTGGATTCGGCGGTGGCAGCGGCGGAGGAGGATTCAGCAGCGGCGGAGGC
GGTGGCTTCAGCAGCGGCGGTGGTGGAGGCGGAGGCGGTGGATTCGGCGG
TGGATTCGGAGGCGGCTCCGGCGGCGGCTCCGGCGGCGGTTTCGGCGGAG
GTGGCAGCATTGGCGGATTCGGAGGCGGCGGCGGTGGTGGTGGTGGCACC
ACCTTGGTGCAGAAGCACATCTACGTGCACGTGCCACCACCAGAGCAGGA
AGAAGTGCGCCAGCGCCCTAACCTGCCCATTGGCCAGTCCCAGAAGCACT
ACAAGATCATCTTCATCAAGGCCCCATCGCCACCATCGTACCAGGCTCCG
GTCATTCCCCTGCAGCCTCAGAACGAGGAGAAGACTCTGGTCTACGTGCT
GGTGAAGAAGCCCGAGGATCAGCAGGACATTGTCATCCCCACGCCCGCAC
CCACGCAGCCATCGAAGCCCGAGGTGTACTTCATCAAGTACAAGACCCAG
AAGGATTCCAGCGGCATTTCTGGAGGAATCTCCGGCTCCACTGGTGGCTT
CACCCAGACCAACACCGGCAATGGTTACACCTCTGGCGGCGATGGTGGCT
TCACTGGTGGAGACAGCGGCTCCATCTCGGCCCCGTCCAGCAACTACGGA
CCACCTGGAAAGTCCGGACCCTACGCAAGCTTTCTAGACCAT
BO11139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlT-RA | 861 | CG5812-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
TwdlC-RA | 1083 | CG14254-PA | 550..686 | 569..705 | 370 | 84.7 | Plus |
TwdlE-RA | 594 | CG14534-PA | 265..479 | 491..705 | 370 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlT-RA | 1607 | CG5812-RA | 190..1048 | 16..874 | 4295 | 100 | Plus |
lectin-28C-RC | 3044 | CG7106-RC | 1609..1823 | 705..491 | 370 | 78.1 | Minus |
TwdlC-RA | 1396 | CG14254-RA | 652..788 | 569..705 | 370 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27049920..27050445 | 349..874 | 2630 | 100 | Plus |
3R | 32079331 | 3R | 27049511..27049848 | 16..353 | 1690 | 100 | Plus |
3R | 32079331 | 3R | 26995698..26995834 | 569..705 | 370 | 84.7 | Plus |
2L | 23513712 | 2L | 7858685..7858899 | 705..491 | 370 | 78.1 | Minus |
X | 23542271 | X | 16735536..16735594 | 639..697 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:56:22 has no hits.
BO11139.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:51:36 Download gff for
BO11139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 1..861 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:23:28 Download gff for
BO11139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 180..1046 | 8..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:28 Download gff for
BO11139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 191..1048 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:51:36 Download gff for
BO11139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 180..1046 | 8..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:15 Download gff for
BO11139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 191..1048 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:15 Download gff for
BO11139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27049512..27049845 | 17..350 | 100 | -> | Plus |
3R | 27049922..27050445 | 351..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:28 Download gff for
BO11139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22875234..22875567 | 17..350 | 100 | -> | Plus |
arm_3R | 22875644..22876167 | 351..876 | 99 | | Plus |
BO11139.pep Sequence
Translation from 16 to 892
> BO11139.pep
MKAFILMSCLALAAARPEAGYNYNRPGGGGGSGGGSGGGLGGGFGGGSSG
GFGGGIGGGFGGGFGGGSGGGGFSSGGGGGFSSGGGGGGGGGFGGGFGGG
SGGGSGGGFGGGGSIGGFGGGGGGGGGTTLVQKHIYVHVPPPEQEEVRQR
PNLPIGQSQKHYKIIFIKAPSPPSYQAPVIPLQPQNEEKTLVYVLVKKPE
DQQDIVIPTPAPTQPSKPEVYFIKYKTQKDSSGISGGISGSTGGFTQTNT
GNGYTSGGDGGFTGGDSGSISAPSSNYGPPGKSGPYASFLDH
BO11139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlT-PA | 286 | CG5812-PA | 1..286 | 1..286 | 1561 | 100 | Plus |
TwdlE-PA | 197 | CG14534-PA | 40..163 | 113..233 | 403 | 63.7 | Plus |
TwdlC-PA | 360 | CG14254-PA | 117..235 | 121..236 | 378 | 62.2 | Plus |
Twdlalpha-PA | 388 | CG32574-PA | 1..347 | 1..278 | 348 | 32.6 | Plus |
CG13376-PB | 200 | CG13376-PB | 1..169 | 1..135 | 335 | 50.3 | Plus |