Clone BO11140 Report

Search the DGRC for BO11140

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:111
Well:40
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO11140.pep: validated not full length
Sequenced Size:2107

Clone Sequence Records

BO11140.3prime Sequence

874 bp (760 high quality bases) assembled on 2006-04-19

> BO11140.3prime
ATGGTCTAGAAAGCTTGCATCCAGGTGTTTATACATATCCTCCAGCTGGG
GCTTAAAATAGCTCTTAAGCTGCGGTCTCTTGGCTTTGAATGTGGGCGTC
AGCAGTCCGTTTTGCACCGAGAAGGGATCCGGATGCAGATAGATATCTTT
AACCTGTTCGAATGACTTGAGTCCACTCTGCTTGCCCCAGTTGAGCATGT
CGTTCATGATCAGTTCCTTGACATTCTTATTATTGCACAGGACGGAGAGT
GTGCCGCGTACATTGTTCTCCGTGGCCCATTGCTTCAGTACATCGGTATC
AGGTACAACAACAGCGATAATGCAGCTCTTTAAGCTCTCTCCATAGACAT
AAACTTGATTTACGTATTGACTGAGCGTGTAGATATTCTCGATCTTCTCG
GGCACTATGTACTCGCCCTGGCTAAGCTTGAAGATGTGCTTGCGGCGATC
GATGATCCGTAGTGTTCCATTTGGCAGCCACATGCCCACATCGCCTGTAT
GATGCCAGCCCTCCGAATCGATGGCCTCCGCCGTCTTTTCGGGATCCTTA
TAGTAACCATGGAACACATTCGATCCGCGCACACACACCTCGCCAGTATT
TTGATTGGCAAAGTACTCCATCTCCGGCACATCCACCAGTTTCACAGCAT
TGCAGGACACGGGTGGTCCCACATGGTTGGGCACATGATCTCCCTGAACG
GTAAGGGTAATGGCCCCCGTGCACTCCGTTTGGCCATATCCCTCGAGAAC
CAGGCAGCCCAGAGCACAGCGCATGAAGGTCAGGACATTTCCGGCCAATG
GGGCGGAGCCCACGACCATTAAACGAAGATTTCCGCCAAAGGCCTGATGC
ACCTTCTTGAAGACCAACTTGTCC

BO11140.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-PA 2115 CG3961-RA 1257..2112 874..19 4255 99.8 Minus
CG3961-PC 2115 CG3961-RC 1257..2112 874..19 4255 99.8 Minus
CG3961-PB 1668 CG3961-RB 810..1665 874..19 4255 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-RE 3022 CG3961-RE 1327..2182 874..19 4265 99.9 Minus
CG3961-RD 2649 CG3961-RD 1357..2212 874..19 4265 99.9 Minus
CG3961-RC 3309 CG3961-RC 1614..2469 874..19 4265 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18879802..18880119 557..874 1590 100 Plus
3L 28110227 3L 18879511..18879740 328..557 1135 99.6 Plus
3L 28110227 3L 18879285..18879462 152..329 890 100 Plus
3L 28110227 3L 18879090..18879226 19..155 685 100 Plus
Blast to na_te.dros performed 2015-02-01 10:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy7 5486 gypsy7 GYPSY7 5486bp 4296..4410 297..413 147 61.9 Plus

BO11140.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:07 Download gff for BO11140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-PA 1257..2115 15..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:04 Download gff for BO11140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-PB 810..1668 15..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:32:16 Download gff for BO11140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-RC 1614..2475 13..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:07:58 Download gff for BO11140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-RC 1614..2475 13..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:07:58 Download gff for BO11140.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18879086..18879224 15..153 98 <- Plus
3L 18879287..18879460 154..327 100 <- Plus
3L 18879511..18879739 328..556 99 <- Plus
3L 18879802..18880119 557..874 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:32:16 Download gff for BO11140.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18872186..18872324 15..153 98 <- Plus
arm_3L 18872387..18872560 154..327 100 <- Plus
arm_3L 18872611..18872839 328..556 99 <- Plus
arm_3L 18872902..18873219 557..874 100   Plus

BO11140.5prime Sequence

840 bp (767 high quality bases) assembled on 2006-04-19

> BO11140.5prime
GAAGTTATCAGTCGACATGGCCTACGTCAATCATTTGATTGTCAGCAATT
TTTCATATTTCTGGGACGAGATCGATGGGTTAATGTTCCCAAAGTGCCTC
CCAGGAAGCCTGGCATCTAGTGTGGCATACTACTTTGCAACGAGGCCCGT
TCCGGAACGACCGTTAGTGCCTCTGGAGAACCAATCGCCATTGCTAGAGG
GTCCAGAACAAATACACGTCTCCAAGTTCTACAAGGAGTCGAAGAACGGC
AAGTTCGTGTCCTACATCACAGAGAATGTCCGCACCCTGTACCAGACGTT
CCGCGAGGGCGCCTACGCCTCCAACAATGGACCATGTCTTGGCTGGCGCG
AGACCCTGACCTCCCCCTACCAGTGGATCAACTACGACGAGGCCCTGCTG
CGTGCCAAGAACTTTGGAGCCGGAATGCTGGCGCTAGGAGCCAGGCCAAA
GCAGTTGATTGGGATCTACTCGCAGAACCGCCCGGAATGGATCCTGTACG
AGCAGGGCTGCTACTCCTTCTCCTTGGTGGTGGTGCCGCTGTACGACACC
CTGGGCCCCGATGCCTGCGCCTTCATCATACGCCAGACGGATATGCAGGT
GGTGATTGTGGAGGACGATGGCAAGGCGGCCATGCTGTTGGAGAAGGCGC
CGCGCAGTCTGAAGATCATAGTGGCTATCAAGCCCATCCGGCAGACGACC
CTGGAGCGGGCACGCAGCCGAGGCATACAGATATTCTCATTTATCGATGT
GGAGAAACTAGGTGCCAAAGGCCACCATCCGGAGGTGCCGCCGACGGCGG
AGGATCTTTGCACGGTGTGCTACACGTCCGGAACGACGGG

BO11140.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-PA 2115 CG3961-RA 126..863 103..840 3615 99.5 Plus
CG3961-PC 2115 CG3961-RC 126..863 103..840 3615 99.5 Plus
CG3961-PB 1668 CG3961-RB 1..416 425..840 2030 99.5 Plus
CG3961-PA 2115 CG3961-RA 22..85 17..80 320 100 Plus
CG3961-PC 2115 CG3961-RC 22..85 17..80 320 100 Plus
CG3961-PA 2115 CG3961-RA 96..124 105..77 145 100 Minus
CG3961-PC 2115 CG3961-RC 96..124 105..77 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-RC 3309 CG3961-RC 379..1220 17..840 3730 96.7 Plus
CG3961-RA 3373 CG3961-RA 443..1284 17..840 3730 96.7 Plus
CG3961-RD 2649 CG3961-RD 321..963 198..840 3185 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18880513..18880981 840..372 2315 99.6 Minus
3L 28110227 3L 18881078..18881253 373..198 880 100 Minus
3L 28110227 3L 18887060..18887157 200..103 475 99 Minus
3L 28110227 3L 18887552..18887598 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:38:25 has no hits.

BO11140.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:08 Download gff for BO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-PC 22..85 17..80 100   Plus
CG3961-PC 126..863 103..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:05 Download gff for BO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-PA 22..85 17..80 100 == Plus
CG3961-PA 126..863 103..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:37:27 Download gff for BO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-RA 443..506 17..80 100 == Plus
CG3961-RA 547..1284 103..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:17:26 Download gff for BO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-RA 443..506 17..80 100 == Plus
CG3961-RA 547..1284 103..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:17:26 Download gff for BO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18881078..18881251 200..373 100 <- Minus
3L 18887061..18887157 103..199 98 == Minus
3L 18887198..18887215 63..80 100 <- Minus
3L 18887553..18887598 17..62 100   Minus
3L 18880513..18880979 374..840 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:37:27 Download gff for BO11140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18880161..18880257 103..199 98 == Minus
arm_3L 18880298..18880315 63..80 100 <- Minus
arm_3L 18880653..18880698 17..62 100   Minus
arm_3L 18873613..18874079 374..840 99 <- Minus
arm_3L 18874178..18874351 200..373 100 <- Minus

BO11140.complete Sequence

2107 bp (2107 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ632010

> BO11140.complete
GAAGTTATCAGTCGACATGGCCTACGTCAATCATTTGATTGTCAGCAATT
TTTCATATTTCTGGGACGAGATCGATGGGTTAATGTTCCCAAAGTGCCTC
CCAGGAAGCCTGGCATCTAGTGTGGCATACTACTTTGCAACGAGGCCCGT
TCCGGAACGACCGTTAGTGCCTCTGGAGAACCAATCGCCATTGCTAGAGG
GTCCAGAACAAATACACGTCTCCAAGTTCTACAAGGAGTCGAAGAACGGC
AAGTTCGTGTCCTACATCACAGAGAATGTCCGCACCCTGTACCAGACGTT
CCGCGAGGGCGCCTACGCCTCCAACAATGGACCATGTCTTGGCTGGCGCG
AGACCCTGACCTCCCCCTACCAGTGGATCAACTACGACGAGGCCCTGCTG
CGTGCCAAGAACTTTGGAGCCGGAATGCTGGCGCTAGGAGCCAGGCCAAA
GCAGTTGATTGGGATCTACTCGCAGAACCGCCCGGAATGGATCCTGTACG
AGCAGGGCTGCTACTCCTTCTCCTTGGTGGTGGTGCCGCTGTACGACACC
CTGGGCCCCGATGCCTGCGCCTTCATCATACGCCAGACGGATATGCAGGT
GGTGATTGTGGAGGACGATGGCAAGGCGGCCATGCTGTTGGAGAAGGCGC
CGCGCAGTCTGAAGATCATAGTGGCTATCAAGCCCATCCGGCAGACGACC
CTGGAGCGGGCACGCAGCCGAGGCATACAGATATTCTCATTTATCGATGT
GGAGAAACTAGGTGCCAAAGGCAACCATCCGGAGGTGCCGCCGACGGCGG
AGGATCTTTGCACGGTGTGCTACACGTCCGGGACGACGGGCAATCCGAAG
GGCGTGATGCTCACCCACGGCAACGTGGTGGCCGGCGTCTGTTCTGTGAT
CCTGCAGATGGGCGACCATCGCATCCGGGCGGGCGATGTGATGGTGTCAT
TCCTGCCCCTGGCCCACATGTTCGAGCGTTGCTGCGAGAATGGAATGTAC
TATGTGGGCGGCTGTGTGGGCTTCTATTCCGGCGACATCAAGGAATTAAC
CAATGACCTCAAGATGCTGAAACCAACCGTAATGCCGGCAGTGCCTCGTC
TTTTGAACCGCGTCTACGACAAGATTCAGAATGATATCTCAGCGTCTGGA
CTGAAGAGGGGTCTCTTCAATATGGCCATGCGAGCGAAGGAGAAGGAGAT
CGCCAGGGGTGTCCTGCGGAGGAACGGCTGCTGGGACAAGTTGGTCTTCA
AGAAGGTGCATCAGGCCTTTGGCGGAAATCTTCGTTTAATGGTCGTGGGC
TCCGCCCCATTGGCCGGAAATGTCCTGACCTTCATGCGCTGTGCTCTGGG
CTGCCTGGTTCTCGAGGGATATGGCCAAACGGAGTGCACGGGGGCCATTA
CCCTTACCGTTCAGGGAGATCATGTGCCCAACCATGTGGGACCACCCGTG
TCCTGCAATGCTGTGAAACTGGTGGATGTGCCGGAGATGGAGTACTTTGC
CAATCAAAATACTGGCGAGGTGTGTGTGCGCGGATCGAATGTGTTCCATG
GTTACTATAAGGATCCCGAAAAGACGGCGGAGGCCATCGATTCGGAGGGC
TGGCATCATACAGGCGATGTGGGCATGTGGCTGCCAAATGGAACACTACG
GATCATCGATCGCCGCAAGCACATCTTCAAGCTTAGCCAGGGCGAGTACA
TAGTGCCCGAGAAGATCGAGAATATCTACACGCTCAGTCAATACGTAAAT
CAAGTTTATGTCTATGGAGAGAGCTTAAAGAGCTGCATTATCGCTGTTGT
TGTACCTGATACCGATGTACTGAAGCAATGGGCCACGGAGAACAATGTAC
GCGGCACACTCTCCGTCCTGTGCAATAATAAGAATGTCAAGGAACTGATC
ATGAACGACATGCTCAACTGGGGCAAGCAGAGTGGACTCAAGTCATTCGA
ACAGGTTAAAGATATCTATCTGCATCCGGATCCCTTCTCGGTGCAAAACG
GACTGCTGACGCCCACATTCAAAGCCAAGAGACCGCAGCTTAAGAGCTAT
TTTAAGCCCCAGCTGGAGGATATGTATAAACACCTGGATGCAAGCTTTCT
AGACCAT

BO11140.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-RC 2115 CG3961-PC 126..2112 103..2089 9890 99.8 Plus
CG3961-RA 2115 CG3961-PA 126..2112 103..2089 9890 99.8 Plus
CG3961-RD 1965 CG3961-PD 71..1962 198..2089 9430 99.9 Plus
CG3961-RC 2115 CG3961-PC 22..85 17..80 320 100 Plus
CG3961-RA 2115 CG3961-PA 22..85 17..80 320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-RC 3309 CG3961-RC 483..2469 103..2089 9890 99.8 Plus
CG3961-RA 3373 CG3961-RA 547..2533 103..2089 9890 99.8 Plus
CG3961-RD 2649 CG3961-RD 321..2212 198..2089 9430 99.9 Plus
CG3961-RC 3309 CG3961-RC 379..442 17..80 320 100 Plus
CG3961-RA 3373 CG3961-RA 443..506 17..80 320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18879802..18880981 1551..372 5885 99.9 Minus
3L 28110227 3L 18879511..18879740 1780..1551 1135 99.6 Minus
3L 28110227 3L 18879285..18879462 1956..1779 890 100 Minus
3L 28110227 3L 18881078..18881253 373..198 880 100 Minus
3L 28110227 3L 18879090..18879226 2089..1953 685 100 Minus
3L 28110227 3L 18887060..18887157 200..103 475 99 Minus
3L 28110227 3L 18887552..18887598 63..17 235 100 Minus
Blast to na_te.dros performed 2014-11-27 15:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy7 5486 gypsy7 GYPSY7 5486bp 4296..4410 1811..1695 147 61.9 Minus

BO11140.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:17 Download gff for BO11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG3961-RC 22..85 17..80 100 == Plus
CG3961-RC 126..2115 103..2093 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:12:05 Download gff for BO11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG3961-RC 378..441 17..80 100 == Plus
CG3961-RC 482..2474 103..2095 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:23 Download gff for BO11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG3961-RA 443..506 17..80 100 == Plus
CG3961-RA 547..2533 103..2091 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:17 Download gff for BO11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG3961-RC 378..441 17..80 100 == Plus
CG3961-RC 482..2474 103..2095 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:00 Download gff for BO11140.complete
Subject Subject Range Query Range Percent Splice Strand
CG3961-RA 443..506 17..80 100 == Plus
CG3961-RA 547..2533 103..2091 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:00 Download gff for BO11140.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18879088..18879224 1955..2091 98 <- Minus
3L 18879287..18879460 1781..1954 100 <- Minus
3L 18879511..18879739 1552..1780 99 <- Minus
3L 18879802..18880979 374..1551 99 <- Minus
3L 18881078..18881251 200..373 100 <- Minus
3L 18887061..18887157 103..199 98 == Minus
3L 18887198..18887215 63..80 100 <- Minus
3L 18887553..18887598 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:23 Download gff for BO11140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18872188..18872324 1955..2091 98 <- Minus
arm_3L 18872387..18872560 1781..1954 100 <- Minus
arm_3L 18872611..18872839 1552..1780 99 <- Minus
arm_3L 18872902..18874079 374..1551 99 <- Minus
arm_3L 18874178..18874351 200..373 100 <- Minus
arm_3L 18880161..18880257 103..199 98 == Minus
arm_3L 18880298..18880315 63..80 100 <- Minus
arm_3L 18880653..18880698 17..62 100   Minus

BO11140.pep Sequence

Translation from 16 to 2107

> BO11140.pep
MAYVNHLIVSNFSYFWDEIDGLMFPKCLPGSLASSVAYYFATRPVPERPL
VPLENQSPLLEGPEQIHVSKFYKESKNGKFVSYITENVRTLYQTFREGAY
ASNNGPCLGWRETLTSPYQWINYDEALLRAKNFGAGMLALGARPKQLIGI
YSQNRPEWILYEQGCYSFSLVVVPLYDTLGPDACAFIIRQTDMQVVIVED
DGKAAMLLEKAPRSLKIIVAIKPIRQTTLERARSRGIQIFSFIDVEKLGA
KGNHPEVPPTAEDLCTVCYTSGTTGNPKGVMLTHGNVVAGVCSVILQMGD
HRIRAGDVMVSFLPLAHMFERCCENGMYYVGGCVGFYSGDIKELTNDLKM
LKPTVMPAVPRLLNRVYDKIQNDISASGLKRGLFNMAMRAKEKEIARGVL
RRNGCWDKLVFKKVHQAFGGNLRLMVVGSAPLAGNVLTFMRCALGCLVLE
GYGQTECTGAITLTVQGDHVPNHVGPPVSCNAVKLVDVPEMEYFANQNTG
EVCVRGSNVFHGYYKDPEKTAEAIDSEGWHHTGDVGMWLPNGTLRIIDRR
KHIFKLSQGEYIVPEKIENIYTLSQYVNQVYVYGESLKSCIIAVVVPDTD
VLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNWGKQSGLKSFEQVKDI
YLHPDPFSVQNGLLTPTFKAKRPQLKSYFKPQLEDMYKHLDASFLDH

BO11140.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-PC 704 CG3961-PC 8..704 1..691 3604 97.8 Plus
CG3961-PA 704 CG3961-PA 8..704 1..691 3604 97.8 Plus
CG3961-PD 654 CG3961-PD 14..654 51..691 3375 99.1 Plus
CG3961-PE 666 CG3961-PE 14..666 51..691 3352 97.2 Plus
Acsl-PC 707 CG8732-PC 69..705 81..687 793 31.7 Plus