Clone Sequence Records
BO11141.3prime Sequence
563 bp (562 high quality bases) assembled on 2006-04-19
> BO11141.3prime
ATGGTCTAGAAAGCTTGCCGAATGTATTGCCCTGAGCCTGTTGGCTTGTT
CAAAAATGTCTACAGCTGGTCGAAATTGATGATGAAAACACCTGCAAATT
GCAAAACATTGAGTGGAGGAGGGCCTTTTAGCCGAGCCACATCCTCCCAC
ATGACCGCGAGGCAATAAGTCAGGAAAGTCGGGTTGCAAAGGCAATGGAA
CAGTCACAGGCACAGGCAACCCTCGCAGCTGGCAGGAAGCCAAATCCTCG
AGAGGGGGAGGACTTTGGCAGCGGGCTGGGGCTCCCCCATGCGACACCTC
CCACATAGCAGCCAGCTGGCTGGTAAGATCCGGCTCATGAATACATTTGA
ACTCGTTAACTCCGACACACCCCAACATTTGCTTTTGGGGGTTGTTCCGA
GCGCCGAGCGCCGAGTCCTCGGCCGGGAACTCACTCATCCATCTCGACCG
TCTCGTCCTCCGATTGCCGACCGTGTCCTGGCTTTGCACGTGCACAATTT
CTAGTTCATCAAAAGGAATTTGCTTTTGGGGAGCGTCCTCGTCTGACATG
TCGACTGATAACT
BO11141.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32341-PA | 534 | CG32341-RA | 1..531 | 549..19 | 2605 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 21:51:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 797341..797871 | 549..19 | 2625 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-11 21:51:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 70..99 | 478..507 | 105 | 83.3 | Plus |
BO11141.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:09 Download gff for
BO11141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32341-PA | 1..534 | 16..549 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:07 Download gff for
BO11141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32341-PA | 1..534 | 16..549 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:20 Download gff for
BO11141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797871 | 19..549 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:20 Download gff for
BO11141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797871 | 19..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:28:21 Download gff for
BO11141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797871 | 19..549 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:28:21 Download gff for
BO11141.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797871 | 19..549 | 99 | | Minus |
BO11141.5prime Sequence
563 bp (562 high quality bases) assembled on 2006-04-19
> BO11141.5prime
GAAGTTATCAGTCGACATGTCAGACGAGGACGCTCCCCAAAAGCAAATTC
CTTTTGATGAACTAGAAATTGTGCACGTGCAAAGCCAGGACACGGTCGGC
AATCGGAGGACGAGACGGTCGAGATGGATGAGTGAGTTCCCGGCCGAGGA
CTCGGCGCTCGGCGCTCGGAACAACCCCCAAAAGCAAATGTTGGGGTGTG
TCGGAGTTAACGAGTTCAAATGTATTCATGAGCCGGATCTTACCAGCCAG
CTGGCTGCTATGTGGGAGGTGTCGCATGGGGGAGCCCCAGCCCGCTGCCA
AAGTCCTCCCCCTCTCGAGGATTTGGCTTCCTGCCAGCTGCGAGGGTTGC
CTGTGCCTGTGACTGTTCCATTGCCTTTGCAACCCGACTTTCCTGACTTA
TTGCCTCGCGGTCATGTGGGAGGATGTGGCTCGGCTAAAAGGCCCTCCTC
CACTCAATGTTTTGCAATTTGCAGGTGTTTTCATCATCAATTTCGACCAG
CTGTAGACATTTTTGAACAAGCCAACAGGCTCAGGGCAATACATTCGGCA
AGCTTTCTAGACC
BO11141.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32341-PA | 534 | CG32341-RA | 1..531 | 17..547 | 2605 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 14:53:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 797341..797871 | 17..547 | 2625 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-11 14:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 70..99 | 88..59 | 105 | 83.3 | Minus |
BO11141.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:12 Download gff for
BO11141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32341-PA | 1..534 | 17..550 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:08 Download gff for
BO11141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32341-PA | 1..534 | 17..550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:34 Download gff for
BO11141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797871 | 17..547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:34 Download gff for
BO11141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797871 | 17..547 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:02:33 Download gff for
BO11141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797871 | 17..547 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:02:33 Download gff for
BO11141.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797871 | 17..547 | 99 | | Plus |
BO11141.complete Sequence
565 bp (565 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ632011
> BO11141.complete
GAAGTTATCAGTCGACATGTCAGACGAGGACGCTCCCCAAAAGCAAATTC
CTTTTGATGAACTAGAAATTGTGCACGTGCAAAGCCAGGACACGGTCGGC
AATCGGAGGACGAGACGGTCGAGATGGATGAGTGAGTTCCCGGCCGAGGA
CTCGGCGCTCGGCGCTCGGAACAACCCCCAAAAGCAAATGTTGGGGTGTG
TCGGAGTTAACGAGTTCAAATGTATTCATGAGCCGGATCTTACCAGCCAG
CTGGCTGCTATGTGGGAGGTGTCGCATGGGGGAGCCCCAGCCCGCTGCCA
AAGTCCTCCCCCTCTCGAGGATTTGGCTTCCTGCCAGCTGCGAGGGTTGC
CTGTGCCTGTGACTGTTCCATTGCCTTTGCAACCCGACTTTCCTGACTTA
TTGCCTCGCGGTCATGTGGGAGGATGTGGCTCGGCTAAAAGGCCCTCCTC
CACTCAATGTTTTGCAATTTGCAGGTGTTTTCATCATCAATTTCGACCAG
CTGTAGACATTTTTGAACAAGCCAACAGGCTCAGGGCAATACATTCGGCA
AGCTTTCTAGACCAT
BO11141.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 15:50:44 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 15:50:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 797341..797871 | 17..547 | 2625 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-26 15:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 70..99 | 88..59 | 105 | 83.3 | Minus |
BO11141.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 22:56:25 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:56:25 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:58 Download gff for
BO11141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797871 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:58 Download gff for
BO11141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797871 | 17..549 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:58 Download gff for
BO11141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797871 | 17..549 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:58 Download gff for
BO11141.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797871 | 17..549 | 99 | | Plus |
BO11141.pep Sequence
Translation from 16 to 565
> BO11141.pep
MSDEDAPQKQIPFDELEIVHVQSQDTVGNRRTRRSRWMSEFPAEDSALGA
RNNPQKQMLGCVGVNEFKCIHEPDLTSQLAAMWEVSHGGAPARCQSPPPL
EDLASCQLRGLPVPVTVPLPLQPDFPDLLPRGHVGGCGSAKRPSSTQCFA
ICRCFHHQFRPAVDIFEQANRLRAIHSASFLDH
Sequence BO11141.pep has no blast hits.