Clone BO11141 Report

Search the DGRC for BO11141

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:111
Well:41
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO11141.pep: validated full length
Sequenced Size:565

Clone Sequence Records

BO11141.3prime Sequence

563 bp (562 high quality bases) assembled on 2006-04-19

> BO11141.3prime
ATGGTCTAGAAAGCTTGCCGAATGTATTGCCCTGAGCCTGTTGGCTTGTT
CAAAAATGTCTACAGCTGGTCGAAATTGATGATGAAAACACCTGCAAATT
GCAAAACATTGAGTGGAGGAGGGCCTTTTAGCCGAGCCACATCCTCCCAC
ATGACCGCGAGGCAATAAGTCAGGAAAGTCGGGTTGCAAAGGCAATGGAA
CAGTCACAGGCACAGGCAACCCTCGCAGCTGGCAGGAAGCCAAATCCTCG
AGAGGGGGAGGACTTTGGCAGCGGGCTGGGGCTCCCCCATGCGACACCTC
CCACATAGCAGCCAGCTGGCTGGTAAGATCCGGCTCATGAATACATTTGA
ACTCGTTAACTCCGACACACCCCAACATTTGCTTTTGGGGGTTGTTCCGA
GCGCCGAGCGCCGAGTCCTCGGCCGGGAACTCACTCATCCATCTCGACCG
TCTCGTCCTCCGATTGCCGACCGTGTCCTGGCTTTGCACGTGCACAATTT
CTAGTTCATCAAAAGGAATTTGCTTTTGGGGAGCGTCCTCGTCTGACATG
TCGACTGATAACT

BO11141.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32341-PA 534 CG32341-RA 1..531 549..19 2605 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 21:51:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 797341..797871 549..19 2625 99.6 Minus
Blast to na_te.dros performed 2015-02-11 21:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 70..99 478..507 105 83.3 Plus

BO11141.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:09 Download gff for BO11141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32341-PA 1..534 16..549 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:07 Download gff for BO11141.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32341-PA 1..534 16..549 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:20 Download gff for BO11141.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797871 19..549 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:34:20 Download gff for BO11141.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797871 19..549 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:28:21 Download gff for BO11141.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797871 19..549 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:28:21 Download gff for BO11141.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797871 19..549 99   Minus

BO11141.5prime Sequence

563 bp (562 high quality bases) assembled on 2006-04-19

> BO11141.5prime
GAAGTTATCAGTCGACATGTCAGACGAGGACGCTCCCCAAAAGCAAATTC
CTTTTGATGAACTAGAAATTGTGCACGTGCAAAGCCAGGACACGGTCGGC
AATCGGAGGACGAGACGGTCGAGATGGATGAGTGAGTTCCCGGCCGAGGA
CTCGGCGCTCGGCGCTCGGAACAACCCCCAAAAGCAAATGTTGGGGTGTG
TCGGAGTTAACGAGTTCAAATGTATTCATGAGCCGGATCTTACCAGCCAG
CTGGCTGCTATGTGGGAGGTGTCGCATGGGGGAGCCCCAGCCCGCTGCCA
AAGTCCTCCCCCTCTCGAGGATTTGGCTTCCTGCCAGCTGCGAGGGTTGC
CTGTGCCTGTGACTGTTCCATTGCCTTTGCAACCCGACTTTCCTGACTTA
TTGCCTCGCGGTCATGTGGGAGGATGTGGCTCGGCTAAAAGGCCCTCCTC
CACTCAATGTTTTGCAATTTGCAGGTGTTTTCATCATCAATTTCGACCAG
CTGTAGACATTTTTGAACAAGCCAACAGGCTCAGGGCAATACATTCGGCA
AGCTTTCTAGACC

BO11141.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32341-PA 534 CG32341-RA 1..531 17..547 2605 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 14:53:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 797341..797871 17..547 2625 99.6 Plus
Blast to na_te.dros performed 2015-02-11 14:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 70..99 88..59 105 83.3 Minus

BO11141.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:12 Download gff for BO11141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32341-PA 1..534 17..550 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:08 Download gff for BO11141.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32341-PA 1..534 17..550 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:34 Download gff for BO11141.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797871 17..547 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:34 Download gff for BO11141.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797871 17..547 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:02:33 Download gff for BO11141.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797871 17..547 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:02:33 Download gff for BO11141.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797871 17..547 99   Plus

BO11141.complete Sequence

565 bp (565 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ632011

> BO11141.complete
GAAGTTATCAGTCGACATGTCAGACGAGGACGCTCCCCAAAAGCAAATTC
CTTTTGATGAACTAGAAATTGTGCACGTGCAAAGCCAGGACACGGTCGGC
AATCGGAGGACGAGACGGTCGAGATGGATGAGTGAGTTCCCGGCCGAGGA
CTCGGCGCTCGGCGCTCGGAACAACCCCCAAAAGCAAATGTTGGGGTGTG
TCGGAGTTAACGAGTTCAAATGTATTCATGAGCCGGATCTTACCAGCCAG
CTGGCTGCTATGTGGGAGGTGTCGCATGGGGGAGCCCCAGCCCGCTGCCA
AAGTCCTCCCCCTCTCGAGGATTTGGCTTCCTGCCAGCTGCGAGGGTTGC
CTGTGCCTGTGACTGTTCCATTGCCTTTGCAACCCGACTTTCCTGACTTA
TTGCCTCGCGGTCATGTGGGAGGATGTGGCTCGGCTAAAAGGCCCTCCTC
CACTCAATGTTTTGCAATTTGCAGGTGTTTTCATCATCAATTTCGACCAG
CTGTAGACATTTTTGAACAAGCCAACAGGCTCAGGGCAATACATTCGGCA
AGCTTTCTAGACCAT

BO11141.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 15:50:44 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 15:50:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 797341..797871 17..547 2625 99.6 Plus
Blast to na_te.dros performed 2014-11-26 15:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 70..99 88..59 105 83.3 Minus

BO11141.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 22:56:25 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:56:25 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:58 Download gff for BO11141.complete
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797871 17..549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:58 Download gff for BO11141.complete
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797871 17..549 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:58 Download gff for BO11141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797871 17..549 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:58 Download gff for BO11141.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797871 17..549 99   Plus

BO11141.pep Sequence

Translation from 16 to 565

> BO11141.pep
MSDEDAPQKQIPFDELEIVHVQSQDTVGNRRTRRSRWMSEFPAEDSALGA
RNNPQKQMLGCVGVNEFKCIHEPDLTSQLAAMWEVSHGGAPARCQSPPPL
EDLASCQLRGLPVPVTVPLPLQPDFPDLLPRGHVGGCGSAKRPSSTQCFA
ICRCFHHQFRPAVDIFEQANRLRAIHSASFLDH
Sequence BO11141.pep has no blast hits.