Clone Sequence Records
BO11142.3prime Sequence
898 bp (824 high quality bases) assembled on 2006-04-19
> BO11142.3prime
ATGGTCTAGAAAGCTTGCACTGCTCTGGGCAGTTACGGGCTTGGTGGGCG
GCGATGATGGCGTGCTGCCAGCGTCCAGAGGCTCCGTTCGTTCCTTTTCC
TTGTTCCAGCTCTTGAGGCCTTCGGGCAGAGTGGTGTCCTCCTCGAAGGA
GCCGGTACCCTCGACGAACTCCTCGTAGGTTGACTTCTCTTTGAAGGGTC
GTGGGCCCAGCAGCTCAATCATATCATCACGGCTGAGCACTTCGTTTTGG
AGCAGTCTTTCCGCCACTTTTTGAACATTCTCCTTGTGCTTGGTCAGCAG
ACTAGTGGTGGCCTCGTGGGCACATTTGATAATCGACCTCACCTCGTTGT
CGATCAGCTGCGCTGTGTCCTCCGAGTATGGTTTGCTGAAAACGGGATCA
CCGGCCTGGCCCACATCGAAGCTGACCTGCCCGACCTTCTCGTTCATGCC
GAAACGCACCACCTGGGAGTAGGCAATATCGGTGATCTTCTTTAGATCAT
CCTGAGCACCAGTGGTAATGCGATTAAAGAACAGCTCTTCGGCCACACGT
CCGCCGAGCGTCATGCACATGCGATCGAACAACTGCTCCTTGGACAGCAA
GTAGTGATCCTTGGGCAGATACTGGGCGTAGCCCAGACCCTTGCCGCGTG
GTATAATCGAGACCTTCAGCAGGGGATCTGCGTGCTCCAGGAACCAACCG
GCCACCGCATGGCCAGCCTCGTGGTGTGCCACCGTTCGCTTTTCCTCCGG
CGCCAGAACATTGGTCTTCTTCTCCATGCCAGCGATAACACGCTCAATGG
CCTGCTCGAAGTGCTTGAGTACGATCGAATCCTTGGAGTCGCGGGCGGCA
ATCAAGCAGCTTCGTTGCAAACATTCGCGATGTCAGCGCCTGTGAAGC
BO11142.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-PB | 2094 | CG6512-RB | 1255..2091 | 855..19 | 4185 | 100 | Minus |
| CG6512-PA | 2481 | CG6512-RA | 1642..2478 | 855..19 | 4185 | 100 | Minus |
| CG6512-PB | 2094 | CG6512-RB | 1211..1255 | 898..854 | 225 | 100 | Minus |
| CG6512-PA | 2481 | CG6512-RA | 1598..1642 | 898..854 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 3105 | CG6512-RA | 1858..2738 | 898..19 | 4380 | 99.9 | Minus |
| CG6512-RB | 2816 | CG6512-RB | 1435..2315 | 898..19 | 4380 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17239114..17239994 | 19..898 | 4355 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:04:02 has no hits.
BO11142.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:13 Download gff for
BO11142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-PB | 1211..2094 | 18..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:10 Download gff for
BO11142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-PA | 1598..2481 | 18..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:21:30 Download gff for
BO11142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RB | 1435..2320 | 13..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:41 Download gff for
BO11142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RB | 1435..2320 | 13..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:41 Download gff for
BO11142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17239109..17239994 | 13..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:21:30 Download gff for
BO11142.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17232209..17233094 | 13..898 | 99 | | Plus |
BO11142.5prime Sequence
907 bp (762 high quality bases) assembled on 2006-04-19
> BO11142.5prime
GAAGTTATCAGTCGACATGGCGTTCCGGCTGCTTGGCACGGCCAAAACGA
TGGCCGGAATGATGCGGCGCAACTACACGGCGGGTTCCTTGCCGGGAAAG
GGACAACGCACACACATGGGTGCCACGGGCGCCGGGGTTTACATCCTGCC
CACGGAGCTGTCGCCCCTGCTGCGCTACGTGGTCAAACAGATCCAGCTGC
TGTGCAAAAAGCCGCCGAAGGGATTTGAAAAGTATTTCGAAGCCGGCGGC
AAGTCGTCTGGCCAACCGAAGGGATCCGTCGGCGATAAGAAGCCACCCGC
GGGTTCCAGCAAATCCGCCTCGGAGAAGCCCAGCACATCGACACCCGCCT
CAGTTAAACCCAGCAGATCCCAAACAGACGCGAAATCGGACTGGAACTTC
GGCATGTTCAGCAACAGCTCGAGGGGGCCAGCAGGAAAAGGAGGCAACTC
GCTGGGCGGACGACCTCTGGGCGAGAACGGTGGCGGCGGGGACAGGGAGC
GGTGGATCCTTCTGGGTGCCATCGGAGCCGTCGTCCTGGTGGGTTCGTTC
GCCTTCTTCGAGATGGGCTACAAGGAGATCTCGTGGAAGGAGTTCGTCAA
CAGCTACCTGTCGAAGGGCGTCGTGGAGAAGCTGGAGGTGGTTAACAAGA
AGTGGGTGAGAGTGCGTCTGCAGCAGAACAGCAACAGCGGCAGCGGCGTC
TTGTGGTTCAACATCGGCAGTGTCGATAGCTTCGAGCGAAACCTGGAGGC
AGCCCAGACGGAGCAGGGAACGGAATCCATCAACTTTGTGCCCGTAATCT
ACCGCAACGAGGTGGAGGCCGCCAGTCTGACGGGTCTGCTGCCCACGTTG
CTCATCATAGGCTTTCTGGTCTATATGATGCGGAAGTCGGCCGATATGAT
GGGTGGA
BO11142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-PA | 2481 | CG6512-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
| CG6512-PB | 2094 | CG6512-RB | 1..504 | 404..907 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 3105 | CG6512-RA | 260..1151 | 16..907 | 4460 | 100 | Plus |
| CG6512-RB | 2816 | CG6512-RB | 175..728 | 354..907 | 2770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17241217..17241721 | 603..99 | 2525 | 100 | Minus |
| 3L | 28110227 | 3L | 17240755..17241063 | 907..599 | 1545 | 100 | Minus |
| 3L | 28110227 | 3L | 17241784..17241869 | 101..16 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:43:45 has no hits.
BO11142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:14 Download gff for
BO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:11 Download gff for
BO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:50 Download gff for
BO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 255..1150 | 11..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:49 Download gff for
BO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 255..1150 | 11..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:49 Download gff for
BO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17240756..17241058 | 604..906 | 100 | <- | Minus |
| 3L | 17241217..17241719 | 101..603 | 100 | <- | Minus |
| 3L | 17241785..17241874 | 11..100 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:50 Download gff for
BO11142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17233856..17234158 | 604..906 | 100 | <- | Minus |
| arm_3L | 17234317..17234819 | 101..603 | 100 | <- | Minus |
| arm_3L | 17234885..17234974 | 11..100 | 97 | | Minus |
BO11142.complete Sequence
2512 bp (2512 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ632012
> BO11142.complete
GAAGTTATCAGTCGACATGGCGTTCCGGCTGCTTGGCACGGCCAAAACGA
TGGCCGGAATGATGCGGCGCAACTACACGGCGGGTTCCTTGCCGGGAAAG
GGACAACGCACACACATGGGTGCCACGGGCGCCGGGGTTTACATCCTGCC
CACGGAGCTGTCGCCCCTGCTGCGCTACGTGGTCAAACAGATCCAGCTGC
TGTGCAAAAAGCCGCCGAAGGGATTTGAAAAGTATTTCGAAGCCGGCGGC
AAGTCGTCTGGCCAACCGAAGGGATCCGTCGGCGATAAGAAGCCACCCGC
GGGTTCCAGCAAATCCGCCTCGGAGAAGCCCAGCACATCGACACCCGCCT
CAGTTAAACCCAGCAGATCCCAAACAGACGCGAAATCGGACTGGAACTTC
GGCATGTTCAGCAACAGCTCGAGGGGGCCAGCAGGAAAAGGAGGCAACTC
GCTGGGCGGACGACCTCTGGGCGAGAACGGTGGCGGCGGGGACAGGGAGC
GGTGGATCCTTCTGGGTGCCATCGGAGCCGTCGTCCTGGTGGGTTCGTTC
GCCTTCTTCGAGATGGGCTACAAGGAGATCTCGTGGAAGGAGTTCGTCAA
CAGCTACCTGTCGAAGGGCGTCGTGGAGAAGCTGGAGGTGGTTAACAAGA
AGTGGGTGAGAGTGCGTCTGCAGCAGAACAGCAACAGCGGCAGCGGCGTC
TTGTGGTTCAACATCGGCAGTGTCGATAGCTTCGAGCGAAACCTGGAGGC
AGCCCAGACGGAGCAGGGAACGGAATCCATCAACTTTGTGCCCGTAATCT
ACCGCAACGAGGTGGAGGCCGCCAGTCTGACGGGTCTGCTGCCCACGTTG
CTCATCATAGGCTTTCTGGTCTATATGATGCGGAAGTCGGCCGATATGAT
GGGTGGAGGCCGTGGGCGCAAGGGTGGTGGTCTTTTTGGTGGCGTCATGC
AGTCCACCGCAAAGCTAACCAATCCCAATGAGATTGGTGTGGGTTTCAAG
GATGTTGCCGGTTGCGAGGAGGCCAAAATCGAAATCATGGAGTTCGTTAA
CTTCCTGAAGAACCCGCAGCAGTATATTGATTTAGGCGCCAAGATACCGA
AGGGTGCCATGCTAACTGGCCCACCCGGAACGGGTAAAACGCTACTGGCC
AAGGCTACCGCCGGCGAGGCGAATGTACCGTTTATTACCGTGTCGGGATC
CGAGTTCCTCGAGATGTTTGTGGGCGTGGGACCTTCTCGTGTCCGCGACA
TGTTCGCCATGGCCCGAAAGCATGCTCCCTGCATCCTCTTCATCGACGAA
ATCGATGCTGTGGGTCGCAAACGTGGTGGCAAGACCTTCGGTGGCCACTC
GGAGCAAGAGAATACCCTTAACCAGCTTCTGGTGGAAATGGATGGCTTCA
ATACCACTACGAATGTGGTCGTACTGGCCGCCACTAATCGTGTTGATATT
CTGGACAAGGCTCTCATGCGACCAGGTCGTTTCGATCGACAGATTTATGT
ACCAGCACCTGATATTAAGGGCAGGGCGAGCATCTTTAAGGTGCATCTGG
GTAACCTGAAAACGTCGCTGGACAAGAACGAGCTGAGCAGAAAAATGGCT
GCACTGACACCAGGCTTCACAGGCGCTGACATCGCGAATGTTTGCAACGA
AGCTGCTTTGATTGCCGCCCGCGACTCCAAGGATTCGATCGTACTCAAGC
ACTTCGAGCAGGCCATTGAGCGTGTTATCGCTGGCATGGAGAAGAAGACC
AATGTTCTGGCGCCGGAGGAAAAGCGAACGGTGGCACACCACGAGGCTGG
CCATGCGGTGGCCGGTTGGTTCCTGGAGCACGCAGATCCCCTGCTGAAGG
TCTCGATTATACCACGCGGCAAGGGTCTGGGCTACGCCCAGTATCTGCCC
AAGGATCACTACTTGCTGTCCAAGGAGCAGTTGTTCGATCGCATGTGCAT
GACGCTCGGCGGACGTGTGGCCGAAGAGCTGTTCTTTAATCGCATTACCA
CTGGTGCTCAGGATGATCTAAAGAAGATCACCGATATTGCCTACTCCCAG
GTGGTGCGTTTCGGCATGAACGAGAAGGTCGGGCAGGTCAGCTTCGATGT
GGGCCAGGCCGGTGATCCCGTTTTCAGCAAACCATACTCGGAGGACACAG
CGCAGCTGATCGACAACGAGGTGAGGTCGATTATCAAATGTGCCCACGAG
GCCACCACTAGTCTGCTGACCAAGCACAAGGAGAATGTTCAAAAAGTGGC
GGAAAGACTGCTCCAAAACGAAGTGCTCAGCCGTGATGATATGATTGAGC
TGCTGGGCCCACGACCCTTCAAAGAGAAGTCAACCTACGAGGAGTTCGTC
GAGGGTACCGGCTCCTTCGAGGAGGACACCACTCTGCCCGAAGGCCTCAA
GAGCTGGAACAAGGAAAAGGAACGAACGGAGCCTCTGGACGCTGGCAGCA
CGCCATCATCGCCGCCCACCAAGCCCGTAACTGCCCAGAGCAGTGCAAGC
TTTCTAGACCAT
BO11142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 2481 | CG6512-PA | 1..2478 | 17..2494 | 12390 | 100 | Plus |
| CG6512-RB | 2094 | CG6512-PB | 1..2091 | 404..2494 | 10455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 3105 | CG6512-RA | 260..2738 | 16..2494 | 12395 | 100 | Plus |
| CG6512-RB | 2816 | CG6512-RB | 175..2315 | 354..2494 | 10705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17239114..17240608 | 2494..1000 | 7475 | 100 | Minus |
| 3L | 28110227 | 3L | 17241217..17241721 | 603..99 | 2525 | 100 | Minus |
| 3L | 28110227 | 3L | 17240655..17241063 | 1007..599 | 2015 | 99.5 | Minus |
| 3L | 28110227 | 3L | 17241784..17241869 | 101..16 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:29:08 has no hits.
BO11142.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:57 Download gff for
BO11142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 1..2481 | 17..2495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:28 Download gff for
BO11142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 250..2738 | 11..2500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:11 Download gff for
BO11142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 261..2738 | 17..2496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:58 Download gff for
BO11142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 250..2738 | 11..2500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:04 Download gff for
BO11142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 261..2738 | 17..2496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:04 Download gff for
BO11142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17239112..17240608 | 1000..2496 | 99 | <- | Minus |
| 3L | 17240663..17241058 | 604..999 | 100 | <- | Minus |
| 3L | 17241217..17241719 | 101..603 | 100 | <- | Minus |
| 3L | 17241785..17241868 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:11 Download gff for
BO11142.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17232212..17233708 | 1000..2496 | 99 | <- | Minus |
| arm_3L | 17233763..17234158 | 604..999 | 100 | <- | Minus |
| arm_3L | 17234317..17234819 | 101..603 | 100 | <- | Minus |
| arm_3L | 17234885..17234968 | 17..100 | 100 | | Minus |
BO11142.pep Sequence
Translation from 16 to 2512
> BO11142.pep
MAFRLLGTAKTMAGMMRRNYTAGSLPGKGQRTHMGATGAGVYILPTELSP
LLRYVVKQIQLLCKKPPKGFEKYFEAGGKSSGQPKGSVGDKKPPAGSSKS
ASEKPSTSTPASVKPSRSQTDAKSDWNFGMFSNSSRGPAGKGGNSLGGRP
LGENGGGGDRERWILLGAIGAVVLVGSFAFFEMGYKEISWKEFVNSYLSK
GVVEKLEVVNKKWVRVRLQQNSNSGSGVLWFNIGSVDSFERNLEAAQTEQ
GTESINFVPVIYRNEVEAASLTGLLPTLLIIGFLVYMMRKSADMMGGGRG
RKGGGLFGGVMQSTAKLTNPNEIGVGFKDVAGCEEAKIEIMEFVNFLKNP
QQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM
FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGHSEQENT
LNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQIYVPAPDI
KGRASIFKVHLGNLKTSLDKNELSRKMAALTPGFTGADIANVCNEAALIA
ARDSKDSIVLKHFEQAIERVIAGMEKKTNVLAPEEKRTVAHHEAGHAVAG
WFLEHADPLLKVSIIPRGKGLGYAQYLPKDHYLLSKEQLFDRMCMTLGGR
VAEELFFNRITTGAQDDLKKITDIAYSQVVRFGMNEKVGQVSFDVGQAGD
PVFSKPYSEDTAQLIDNEVRSIIKCAHEATTSLLTKHKENVQKVAERLLQ
NEVLSRDDMIELLGPRPFKEKSTYEEFVEGTGSFEEDTTLPEGLKSWNKE
KERTEPLDAGSTPSSPPTKPVTAQSSASFLDH
BO11142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-PA | 826 | CG6512-PA | 1..826 | 1..826 | 4252 | 100 | Plus |
| CG6512-PB | 697 | CG6512-PB | 1..697 | 130..826 | 3581 | 100 | Plus |
| CG2658-PC | 819 | CG2658-PC | 97..819 | 91..796 | 1294 | 40.2 | Plus |
| CG2658-PA | 819 | CG2658-PA | 97..819 | 91..796 | 1294 | 40.2 | Plus |
| CG3499-PC | 740 | CG3499-PC | 280..735 | 304..763 | 954 | 43.7 | Plus |
