Clone Sequence Records
BO11155.3prime Sequence
912 bp (800 high quality bases) assembled on 2006-04-19
> BO11155.3prime
ATGGTCTAGAAAGCTTGCATCAACTCCAGCAAATCCTTGGCTGCCCTCGA
TGGCCTTGATCAGTTTGTCCTTCAGTTGAAGGTAGCCTTCATAGGGTGGC
AGGTCCAGGCGATTGAAACAGGTATGTGCCCTTGGAAAGTTATTAGGAGT
GCCCCACTTTTCGATAGTAAACATCTGGGGGCCATTTGAGCCGTACAGCT
CCTTGAAACCGTTCATGGGCACGCGTGAAGTGCCCGTAACAAATTGCAGC
AGACGAGAACGCATCTCGTTGGAGAAGGAAAGTACAGCCCTCCAGAACCA
CTGAATAATAATATGATTCATGTGGTAGTCGCCCTTGTACAGAGTATTCT
CGCGCCAATCCTTCACATCGATGTTCTGTATGCCACACATCAGTAGCTCC
AGTTCGTGCTCGTCGAAAATCTTAATAAGATTCAGAGGAATTATCGATCC
AAAACCATCAAGGAAGGACGACATCTGTTCCTTGACACGTGCCACAAAGC
GCCATTCGATAACCAATTTAATGTATTCATCCTTGTTTTCGTTAGTCACG
TCTATGTTGGCACCGCCGGGCTTTAGTTCGTGCTGACTCTTCTGGCCAAA
AACGTCTTCATCCAGGCAGAAAGTCAGTTCCAGAATGCGTGGATCGTTCT
CCTTAATCCACATCAGCGAGTTGTAGTACTCCGTGTCCACAGACTCCATG
TCCTTTAGGTCAATCGGCTTCTGCAGCATCATCTTGTAGAATGGACGAAT
GAAGAAGGCATCTAGCAGCTTTCCATGATACACAGCCATGCCCGCAATAC
GGCCAATGAATTTAAAGTAACTTAAATGCTCCTCGTTGCACAAACCACTA
CCATTGTTTATCTGAAGCGTGTAGTTGTCCATGGCCGAGTACTCGAATAG
TCCGTAGTACGG
BO11155.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7555-PD | 2382 | Nedd4-RD | 1486..2379 | 912..19 | 4445 | 99.8 | Minus |
| CG7555-PC | 2505 | Nedd4-RC | 1609..2502 | 912..19 | 4445 | 99.8 | Minus |
| CG7555-PA | 3024 | Nedd4-RA | 2128..3021 | 912..19 | 4445 | 99.8 | Minus |
| CG7555-PB | 2871 | Nedd4-RB | 1975..2868 | 912..19 | 4445 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-RM | 4146 | CG42279-RM | 2484..3377 | 912..19 | 4455 | 99.9 | Minus |
| Nedd4-RL | 4164 | CG42279-RL | 2502..3395 | 912..19 | 4455 | 99.9 | Minus |
| Nedd4-RK | 3651 | CG42279-RK | 1989..2882 | 912..19 | 4455 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17545035..17545433 | 517..119 | 1995 | 100 | Minus |
| 3L | 28110227 | 3L | 17544677..17544970 | 811..518 | 1470 | 100 | Minus |
| 3L | 28110227 | 3L | 17544517..17544617 | 912..812 | 505 | 100 | Minus |
| 3L | 28110227 | 3L | 17545507..17545607 | 119..19 | 490 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-06 17:43:27 has no hits.
BO11155.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:32 Download gff for
BO11155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-PD | 1486..2382 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:37 Download gff for
BO11155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7555-PB | 1975..2871 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:34:24 Download gff for
BO11155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RK | 1989..2885 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:35:31 Download gff for
BO11155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RK | 1989..2885 | 15..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:35:31 Download gff for
BO11155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17544517..17544617 | 812..912 | 100 | -> | Minus |
| 3L | 17544677..17544970 | 518..811 | 100 | -> | Minus |
| 3L | 17545035..17545433 | 119..517 | 100 | -> | Minus |
| 3L | 17545508..17545610 | 15..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:34:24 Download gff for
BO11155.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17537617..17537717 | 812..912 | 100 | -> | Minus |
| arm_3L | 17537777..17538070 | 518..811 | 100 | -> | Minus |
| arm_3L | 17538135..17538533 | 119..517 | 100 | -> | Minus |
| arm_3L | 17538608..17538710 | 15..118 | 97 | | Minus |
BO11155.5prime Sequence
830 bp (825 high quality bases) assembled on 2006-04-19
> BO11155.5prime
GAAGTTATCAGTCGACATGTCGGCACGTTCCAGCGGCTTGGTGGCCGCGG
CGGCCCTTCCCGTCCCGTCGTCTTCTTCCTCGGTGGCCGGCGGCGACGTG
CCACGCCCGCCGCCCCGCCGGCGAGCGGCCTCTGTTGCGGGACAACAGCA
AACGCGCCAGGAATTTGGAAATGGTTACACTCCTCGCAGATCGTTGGCAG
CAGTGAACGACTCTGGGGACTCGTGTCACCTGCGAATCGTCGTACTCACC
GGTCAGTCGCTGGCCAAAAAGGATATATTCGGCGCCAGCGACCCGTATGT
CAGAATCGATTTGAACACAATCAACGGTGATATTAATATTGACTCTGTTT
TGACGAAGACCAAAAAGAAGACACTGAATCCAACCTGGAATGAAGAGTTC
ATATTTAGAGTTAAACCGTCTGAGCATAAGCTTGTGTTTCAAGTATTTGA
CGAGAATCGCCTGACACGCGACGACTTCCTGGGCATGGTGGAGCTGACCC
TGGTGAATCTGCCTACCGAGCAGGAGGGTCGCACCATCGGAGAACAAAGC
TACACTCTGCGCCCGCGCAGGTCAGTAGGCGCCAAATCCCGCATCAAGGG
CACACTGCGCATCTACCACGCCTTTATCCGGGAGACGCGGGAGCAGAGCG
AGCCATCTAGTGGCAATAGCGATGGCGAGTGGGAGCACGTTGAGGCCACC
AATGCCGGTGAGACGTCTGCCCAGCCGCACCCCTTTCCTACTGGTGGCCA
CGATGCCCTACCCGCTGGATGGGAAGAACGCCAGGATGCCAACGGGCGCA
CGTACTATGTGAATCACACGGCGAGGACGA
BO11155.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7555-PC | 2505 | Nedd4-RC | 1..814 | 17..830 | 4020 | 99.7 | Plus |
| CG7555-PA | 3024 | Nedd4-RA | 1..814 | 17..830 | 4020 | 99.7 | Plus |
| CG7555-PB | 2871 | Nedd4-RB | 76..700 | 206..830 | 3075 | 99.6 | Plus |
| CG7555-PD | 2382 | Nedd4-RD | 76..440 | 206..570 | 1775 | 99.4 | Plus |
| CG7555-PD | 2382 | Nedd4-RD | 440..691 | 579..830 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-RK | 3651 | CG42279-RK | 381..1194 | 17..830 | 4040 | 99.8 | Plus |
| Nedd4-RJ | 4454 | CG42279-RJ | 381..1194 | 17..830 | 4040 | 99.8 | Plus |
| Nedd4-RH | 4131 | CG42279-RH | 381..1194 | 17..830 | 4040 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17530847..17531035 | 17..205 | 945 | 100 | Plus |
| 3L | 28110227 | 3L | 17539567..17539736 | 410..579 | 835 | 99.4 | Plus |
| 3L | 28110227 | 3L | 17540690..17540838 | 579..727 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 17540901..17541004 | 727..830 | 520 | 100 | Plus |
| 3L | 28110227 | 3L | 17538811..17538895 | 286..370 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 17538661..17538744 | 205..288 | 405 | 98.8 | Plus |
| 3L | 28110227 | 3L | 17539454..17539496 | 369..411 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:28:50 has no hits.
BO11155.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:33 Download gff for
BO11155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:20:39 Download gff for
BO11155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7555-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:29:46 Download gff for
BO11155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 374..1193 | 9..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:00:37 Download gff for
BO11155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 374..1193 | 9..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:00:37 Download gff for
BO11155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17539567..17539736 | 410..579 | 99 | -> | Plus |
| 3L | 17540691..17540838 | 580..727 | 100 | -> | Plus |
| 3L | 17540902..17541003 | 728..829 | 100 | | Plus |
| 3L | 17530840..17531035 | 9..205 | 97 | -> | Plus |
| 3L | 17538662..17538744 | 206..288 | 98 | -> | Plus |
| 3L | 17538814..17538895 | 289..370 | 100 | -> | Plus |
| 3L | 17539456..17539494 | 371..409 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:29:46 Download gff for
BO11155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17534002..17534103 | 728..829 | 100 | | Plus |
| arm_3L | 17523940..17524135 | 9..205 | 97 | -> | Plus |
| arm_3L | 17533791..17533938 | 580..727 | 100 | -> | Plus |
| arm_3L | 17531762..17531844 | 206..288 | 98 | -> | Plus |
| arm_3L | 17531914..17531995 | 289..370 | 100 | -> | Plus |
| arm_3L | 17532556..17532594 | 371..409 | 100 | -> | Plus |
| arm_3L | 17532667..17532836 | 410..579 | 99 | -> | Plus |
BO11155.complete Sequence
2536 bp (2536 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ632014
> BO11155.complete
GAAGTTATCAGTCGACATGTCGGCACGTTCCAGCGGCTTGGTGGCCGCGG
CGGCCCTTCCCGTCCCGTCGTCTTCTTCCTCGGTGGCCGGCGGCGACGTG
CCACGCCCGCCGCCCCGCCGGCGAGCGGCCTCTGTTGCGGGACAACAGCA
AACGCGCCAGGAATTTGGAAATGGTTACACTCCTCGCAGATCGTTGGCAG
CAGTGAACGACTCTGGGGACTCGTGTCACCTGCGAATCGTCGTACTCACC
GGTCAGTCGCTGGCCAAAAAGGATATATTCGGCGCCAGCGACCCGTATGT
CAGAATCGATTTGAACACAATCAACGGTGATATTAATATTGACTCTGTTT
TGACGAAGACCAAAAAGAAGACACTGAATCCAACCTGGAATGAAGAGTTC
ATATTTAGAGTTAAACCGTCTGAGCATAAGCTTGTGTTTCAAGTATTTGA
CGAGAATCGCCTGACACGCGACGACTTCCTGGGCATGGTGGAGCTGACCC
TGGTGAATCTGCCTACCGAGCAGGAGGGTCGCACCATCGGAGAACAAAGC
TACACTCTGCGCCCGCGCAGGTCAGTAGGCGCCAAATCCCGCATCAAGGG
CACACTGCGCATCTACCACGCCTTTATCCGGGAGACGCGGGAGCAGAGCG
AGCCATCTAGTGGCAATAGCGATGGCGAGTGGGAGCACGTTGAGGCCACC
AATGCCGGTGAGACGTCTGCCCAGCCGCACCCCTTTCCTACTGGTGGCCA
CGATGCCCTACCCGCTGGATGGGAAGAACGCCAGGATGCCAACGGGCGCA
CGTACTATGTGAATCACACGGCGAGGACGACGCAATGGGATAGGCCTACT
GTCTTAAACAGCCACAGTAGCCAATCCACTGACGACCAGTTGGCCTCGGA
TTTCCAGAGACGTTTCCACATCAGCGTGGACGACACGGAGTCAGGACGTT
CGGCGAATGAAGACACCGATCACACAGACAGCCACAATCCCTCTGACATC
TCAGCTCCGTCCACACGACGCAATTCCGAGGAAGACAACGCGGCTGTGCC
TCCCATGGAACAAAATACTGGTGGTGAAGAGGAACCCCTGCCACCGCGCT
GGTCGATGCAGGTAGCCCCCAACGGAAGGACATTCTTCATTGATCATGCG
TCCCGGAGGACTACTTGGATAGACCCGCGCAACGGACGGGCCAGCCCTAT
GCCAAATCAAACTCGTCGCGTCGAGGACGACCTGGGTCCTTTACCAGAGG
GCTGGGAGGAGCGAGTACACACCGACGGACGCGTATTCTATATAGATCAT
AACACGCGAACTACGCAGTGGGAAGATCCTCGCTTGTCCAATCCAAATAT
TGCCGGTCAGGCTGTGCCCTATTCTCGAGATTACAAGCAAAAATACGAGT
ATTTCAAGAGTCACATTAGAAAGCCTACAAATGTACCAAATAAATTTGAA
ATACGTATTCGACGTACGTCGATACTGGAGGATTCTTACAGAATTATTAG
TTCGGTAACGAAGACCGATTTACTAAAGACTAAATTATGGGTAGAGTTTG
AAGGAGAAACTGGCTTAGATTATGGAGGCCTCGCAAGGGAATGGTTCTAT
TTATTATCAAAAGAAATGTTTAATCCGTACTACGGACTATTCGAGTACTC
GGCCATGGACAACTACACGCTTCAGATAAACAATGGTAGTGGTTTGTGCA
ACGAGGAGCATTTAAGTTACTTTAAATTCATTGGCCGTATTGCGGGCATG
GCTGTGTATCATGGAAAGCTGCTAGATGCCTTCTTCATTCGTCCATTCTA
CAAGATGATGCTGCAGAAGCCGATTGACCTAAAGGACATGGAGTCTGTGG
ACACGGAGTACTACAACTCGCTGATGTGGATTAAGGAGAACGATCCACGC
ATTCTGGAACTGACTTTCTGCCTGGATGAAGACGTTTTTGGCCAGAAGAG
TCAGCACGAACTAAAGCCCGGCGGTGCCAACATAGACGTGACTAACGAAA
ACAAGGATGAATACATTAAATTGGTTATCGAATGGCGCTTTGTGGCACGT
GTCAAGGAACAGATGTCGTCCTTCCTTGATGGTTTTGGATCGATAATTCC
TCTGAATCTTATTAAGATTTTCGACGAGCACGAACTGGAGCTACTGATGT
GTGGCATACAGAACATCGATGTGAAGGATTGGCGCGAGAATACTCTGTAC
AAGGGCGACTACCACATGAATCATATTATTATTCAGTGGTTCTGGAGGGC
TGTACTTTCCTTCTCCAACGAGATGCGTTCTCGTCTGCTGCAATTTGTTA
CGGGCACTTCACGCGTGCCCATGAACGGTTTCAAGGAGCTGTACGGCTCA
AATGGCCCCCAGATGTTTACTATCGAAAAGTGGGGCACTCCTAATAACTT
TCCAAGGGCACATACCTGTTTCAATCGCCTGGACCTGCCACCCTATGAAG
GCTACCTTCAACTGAAGGACAAACTGATCAAGGCCATCGAGGGCAGCCAA
GGATTTGCTGGAGTTGATGCAAGCTTTCTAGACCAT
BO11155.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-RK | 2505 | CG42279-PK | 1..2502 | 17..2518 | 12435 | 99.8 | Plus |
| Nedd4-RE | 2382 | CG42279-PE | 76..2379 | 206..2518 | 11320 | 99.4 | Plus |
| Nedd4-RM | 3000 | CG42279-PM | 1432..2997 | 953..2518 | 7785 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-RK | 3651 | CG42279-RK | 381..2882 | 17..2518 | 12435 | 99.8 | Plus |
| Nedd4-RE | 3384 | CG42279-RE | 312..2615 | 206..2518 | 11320 | 99.4 | Plus |
| Nedd4-RM | 4146 | CG42279-RM | 1812..3377 | 953..2518 | 7785 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17545035..17545433 | 2020..2418 | 1995 | 100 | Plus |
| 3L | 28110227 | 3L | 17544677..17544970 | 1726..2019 | 1470 | 100 | Plus |
| 3L | 28110227 | 3L | 17543764..17544001 | 1064..1301 | 1190 | 100 | Plus |
| 3L | 28110227 | 3L | 17530847..17531035 | 17..205 | 945 | 100 | Plus |
| 3L | 28110227 | 3L | 17539567..17539736 | 410..579 | 835 | 99.4 | Plus |
| 3L | 28110227 | 3L | 17544459..17544617 | 1567..1725 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 17540690..17540838 | 579..727 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 17544256..17544397 | 1427..1568 | 695 | 99.3 | Plus |
| 3L | 28110227 | 3L | 17540901..17541026 | 727..852 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 17544060..17544184 | 1302..1426 | 610 | 99.2 | Plus |
| 3L | 28110227 | 3L | 17543504..17543612 | 955..1063 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 17541301..17541403 | 853..955 | 515 | 100 | Plus |
| 3L | 28110227 | 3L | 17545507..17545607 | 2418..2518 | 490 | 99 | Plus |
| 3L | 28110227 | 3L | 17538811..17538895 | 286..370 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 17538661..17538744 | 205..288 | 405 | 98.8 | Plus |
| 3L | 28110227 | 3L | 17539454..17539496 | 369..411 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:45:57 has no hits.
BO11155.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:04 Download gff for
BO11155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 1..941 | 17..957 | 99 | <- | Plus |
| Nedd4-RH | 1422..2985 | 958..2522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:12 Download gff for
BO11155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 379..1319 | 17..957 | 99 | <- | Plus |
| Nedd4-RH | 1800..3360 | 958..2520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:38 Download gff for
BO11155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RK | 381..2882 | 17..2520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:04 Download gff for
BO11155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 372..1319 | 9..957 | 99 | <- | Plus |
| Nedd4-RH | 1800..3363 | 958..2522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:01 Download gff for
BO11155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RK | 381..2882 | 17..2520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:01 Download gff for
BO11155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17540902..17541026 | 728..852 | 100 | -> | Plus |
| 3L | 17541301..17541403 | 853..955 | 100 | -> | Plus |
| 3L | 17543505..17543612 | 956..1063 | 100 | -> | Plus |
| 3L | 17543764..17544001 | 1064..1301 | 100 | -> | Plus |
| 3L | 17544060..17544184 | 1302..1426 | 99 | -> | Plus |
| 3L | 17544256..17544397 | 1427..1568 | 99 | -> | Plus |
| 3L | 17544461..17544617 | 1569..1725 | 100 | -> | Plus |
| 3L | 17545035..17545433 | 2020..2418 | 100 | -> | Plus |
| 3L | 17545508..17545607 | 2419..2520 | 97 | | Plus |
| 3L | 17530847..17531035 | 17..205 | 100 | -> | Plus |
| 3L | 17538662..17538744 | 206..288 | 98 | -> | Plus |
| 3L | 17538814..17538895 | 289..370 | 100 | -> | Plus |
| 3L | 17539456..17539494 | 371..409 | 100 | -> | Plus |
| 3L | 17539567..17539736 | 410..579 | 99 | -> | Plus |
| 3L | 17540691..17540838 | 580..727 | 100 | -> | Plus |
| 3L | 17544677..17544970 | 1726..2019 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:38 Download gff for
BO11155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17523947..17524135 | 17..205 | 100 | -> | Plus |
| arm_3L | 17531762..17531844 | 206..288 | 98 | -> | Plus |
| arm_3L | 17531914..17531995 | 289..370 | 100 | -> | Plus |
| arm_3L | 17532556..17532594 | 371..409 | 100 | -> | Plus |
| arm_3L | 17532667..17532836 | 410..579 | 99 | -> | Plus |
| arm_3L | 17533791..17533938 | 580..727 | 100 | -> | Plus |
| arm_3L | 17534002..17534126 | 728..852 | 100 | -> | Plus |
| arm_3L | 17534401..17534503 | 853..955 | 100 | -> | Plus |
| arm_3L | 17536605..17536712 | 956..1063 | 100 | -> | Plus |
| arm_3L | 17536864..17537101 | 1064..1301 | 100 | -> | Plus |
| arm_3L | 17537160..17537284 | 1302..1426 | 99 | -> | Plus |
| arm_3L | 17537356..17537497 | 1427..1568 | 99 | -> | Plus |
| arm_3L | 17537561..17537717 | 1569..1725 | 100 | -> | Plus |
| arm_3L | 17537777..17538070 | 1726..2019 | 100 | -> | Plus |
| arm_3L | 17538135..17538533 | 2020..2418 | 100 | -> | Plus |
| arm_3L | 17538608..17538707 | 2419..2520 | 97 | | Plus |
BO11155.pep Sequence
Translation from 16 to 2536
> BO11155.pep
MSARSSGLVAAAALPVPSSSSSVAGGDVPRPPPRRRAASVAGQQQTRQEF
GNGYTPRRSLAAVNDSGDSCHLRIVVLTGQSLAKKDIFGASDPYVRIDLN
TINGDINIDSVLTKTKKKTLNPTWNEEFIFRVKPSEHKLVFQVFDENRLT
RDDFLGMVELTLVNLPTEQEGRTIGEQSYTLRPRRSVGAKSRIKGTLRIY
HAFIRETREQSEPSSGNSDGEWEHVEATNAGETSAQPHPFPTGGHDALPA
GWEERQDANGRTYYVNHTARTTQWDRPTVLNSHSSQSTDDQLASDFQRRF
HISVDDTESGRSANEDTDHTDSHNPSDISAPSTRRNSEEDNAAVPPMEQN
TGGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRASPMPNQTR
RVEDDLGPLPEGWEERVHTDGRVFYIDHNTRTTQWEDPRLSNPNIAGQAV
PYSRDYKQKYEYFKSHIRKPTNVPNKFEIRIRRTSILEDSYRIISSVTKT
DLLKTKLWVEFEGETGLDYGGLAREWFYLLSKEMFNPYYGLFEYSAMDNY
TLQINNGSGLCNEEHLSYFKFIGRIAGMAVYHGKLLDAFFIRPFYKMMLQ
KPIDLKDMESVDTEYYNSLMWIKENDPRILELTFCLDEDVFGQKSQHELK
PGGANIDVTNENKDEYIKLVIEWRFVARVKEQMSSFLDGFGSIIPLNLIK
IFDEHELELLMCGIQNIDVKDWRENTLYKGDYHMNHIIIQWFWRAVLSFS
NEMRSRLLQFVTGTSRVPMNGFKELYGSNGPQMFTIEKWGTPNNFPRAHT
CFNRLDLPPYEGYLQLKDKLIKAIEGSQGFAGVDASFLDH
BO11155.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-PK | 834 | CG42279-PK | 1..834 | 1..834 | 4449 | 100 | Plus |
| Nedd4-PE | 793 | CG7555-PD | 26..793 | 64..834 | 4106 | 99.5 | Plus |
| Nedd4-PG | 931 | CG42279-PG | 1..931 | 1..834 | 3768 | 80.6 | Plus |
| Nedd4-PL | 1005 | CG42279-PL | 423..1005 | 244..834 | 2839 | 90.4 | Plus |
| Nedd4-PJ | 1007 | CG42279-PJ | 425..1007 | 244..834 | 2839 | 90.4 | Plus |
| Nedd4-PL | 1005 | CG42279-PL | 1..350 | 1..353 | 1595 | 89.4 | Plus |
