Clone Sequence Records
BO11165.3prime Sequence
805 bp (734 high quality bases) assembled on 2006-04-19
> BO11165.3prime
ATGGTCTAGAAAGCTTGCAACCATTTGAATCTGCAGCCTCCGCTTGCTGG
CTTCTCTCCGCTTCTTATCCCGTTTCTTGCGGGTCTGTGTGGCCTCCCTG
AAGAGCTGGACACCATCGCGCTGCTCCACTTCCGTTTGCAGCAGGGCCAG
ACCGTGCAGGTTCCATCCTAAGACATCGCGCAGCTGACCAACGTCCCGCT
TGAGCATCGAGAGCAGCTTGACGAGCAGCGGCTTCATGTTCTTAGCCGCC
GAAATGGGCTTCATGTGCACCTTGAACAGGAAGATGGTGACGCGGCAAAG
CAGCTCCAGTTGGTCGGGTCGCTGGGTCAGCAGAGTGGGCAGGCGTTCGA
GGACTTCGCACACAGTGGAGAAGGGGAGTAGAAGAAGTGCCTCCTCCAGA
TCGGACGCACGTATCCTCATCAGGGTGCTGACCAGGAAGTCTTCGGGATT
CTTAACCTGCAAAGCCTGCATCAGAGGATGTAACTCGGGTTTCTCCTCCG
CCTCGAGCTCGAACTGTTTGGATATCTCCAGACATTCGAGTATCGATTCA
GCAGACTGCTCGGAACCCACTGTTTTGCGTGACGGCATCTTCAGACCCGG
AAGCAAGGGAACTGTGTTGTCCTCGCCCGTGGCCAGTTGCTCATTCTCCA
TTTGCTCTCGCTCCTCCTCCTGCACATCCTTCAACACAATAGTCTCATCT
GTTCGCTCGAACATTCTAAGAGTTCGATCTGATCCGCAGGTGACCAAATA
TCGGCCATTCGGAGAAACGGACAGACAATACGCTTCGCCTATGTGTCCAG
GTAAG
BO11165.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8064-PA | 2769 | CG8064-RA | 1980..2766 | 805..19 | 3935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8064-RA | 2901 | CG8064-RA | 2054..2840 | 805..19 | 3935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18285777..18286563 | 805..19 | 3935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:52:56 has no hits.
BO11165.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:49 Download gff for
BO11165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-PA | 1980..2769 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:01 Download gff for
BO11165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-PA | 1980..2769 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:06:06 Download gff for
BO11165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 2052..2838 | 19..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:02 Download gff for
BO11165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 2054..2840 | 19..805 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:02 Download gff for
BO11165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18285777..18286569 | 14..805 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:06:06 Download gff for
BO11165.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14111499..14112291 | 14..805 | 99 | -> | Minus |
BO11165.5prime Sequence
906 bp (731 high quality bases) assembled on 2006-04-19
> BO11165.5prime
GAAGTTATCAGTCGACATGGGTTTAACTAAACAATATTTGGCCTACCGGG
CTATAGACAGCTTTAATATCATCACCTCCGGCCGCGCCAATGTGAACTTT
GCCGTTGTGGACAAGACAGAGGGTCGATATGTGGCCGCTCCAGCTGCTGA
AAATGTGATCGTGTGGGATTTGCGAATGGGCGATCGCAAGCTGACGCTGC
GCCGCGAAAAGTTCGAGGTCACCTCCCTGAGGGTCTCGCCAGATCACCTG
CACATTGCCGTTGGCTATGCGGATGGCATGGTGCAGATCTTCGATCTCAG
CTCGGACAGGTACTACGATCCCATCTGTACGCTGGCACTCCACAAGAACG
CTGTTAGCATCCTGCGGTACGATTTGCAGGGCATGCGTCTGGTGAGCGGA
GGCCTGGACACCGAATTGGTGGTCGTCGATGTGGTGGAGCAGGCGGGAAG
AGCTCGATTGAGTGGCCACAATGCCGCCATCACGGACGCCCATTTCCTGC
AGCGTCTGGTAGACGAGAGCATAGTGGTAAGCTGTTCGAAGGACACGCAG
ATCAAGTTCTGGAACCTGGAGACGCAGTTCTGCTTCAAGACAATCGTGGA
TAACCGCACCGAAGTCTGGGCACTGGCCTTTATTGGGAATCTAATGGTAG
CTGGCGCCGGCGAAAGCGGCATGAATGTCTACCGCCTGAGAAAGCACGAC
GGTGCCATCACTGAAACTCTGGAGTCTGCAGTTGAAAGCCTGTCTATTGA
TGACGGAGACACCATCAGCCCCATTAGCGTGAGCAACTGCGGCACCATCC
AGCGCGCTGGAAAGGGCCGCACCGTCAACCTGGTGACCGATCCCAGTGAA
CGCGTGATCAGCTGCCACGGCACTAATGATCTAATCGAGAACTTCTACAT
CTGCCC
BO11165.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8064-PA | 2769 | CG8064-RA | 1..888 | 17..904 | 4365 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8064-RA | 2901 | CG8064-RA | 75..962 | 17..904 | 4395 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18283955..18284685 | 174..904 | 3610 | 99.6 | Plus |
| 3R | 32079331 | 3R | 18283734..18283891 | 17..174 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:38:27 has no hits.
BO11165.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:50 Download gff for
BO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:02 Download gff for
BO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:48:21 Download gff for
BO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 73..962 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:25 Download gff for
BO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 75..964 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:25 Download gff for
BO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18283734..18283891 | 17..174 | 100 | -> | Plus |
| 3R | 18283956..18284687 | 175..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:48:21 Download gff for
BO11165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14109456..14109613 | 17..174 | 100 | -> | Plus |
| arm_3R | 14109678..14110409 | 175..906 | 99 | | Plus |
BO11165.complete Sequence
2800 bp (2800 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ632017
> BO11165.complete
GAAGTTATCAGTCGACATGGGTTTAACTAAACAATATTTGGCCTACCGGG
CTATAGACAGCTTTAATATCATCACCTCCGGCCGCGCCAATGTGAACTTT
GCCGTTGTGGACAAGACAGAGGGTCGATATGTGGCCGCTCCAGCTGCTGA
AAATGTGATCGTGTGGGATTTGCGAATGGGCGATCGCAAGCTGACGCTGC
GCCGCGAAAAGTTCGAGGTCACCTCCCTGAGGGTCTCGCCAGATCACCTG
CACATTGCCGTTGGCTATGCGGATGGCATGGTGCAGATCTTCGATCTCAG
CTCGGACAGGTACTACGATCCCATCTGTACGCTGGCACTCCACAAGAACG
CTGTTAGCATCCTGCGGTACGATTTGCAGGGCATGCGTCTGGTGAGCGGA
GGCCTGGACACCGAATTGGTGGTCGTCGATGTGGTGGAGCAGGCGGGAAG
AGCTCGATTGAGTGGCCACAATGCCGCCATCACGGACGCCCATTTCCTGC
AGCGTCTGGTAGACGAGAGCATAGTGGTAAGCTGTTCGAAGGACACGCAG
ATCAAGTTCTGGAACCTGGAGACGCAGTTCTGCTTCAAGACAATCGTGGA
TAACCGCACCGAAGTCTGGGCACTGGCCTTTATTGGGAATCTAATGGTAG
CTGGCGCCGGCGAAAGCGGCATGAATGTCTACCGCCTGAGAAAGCACGAC
GGTGCCATCACTGAAACTCTGGAGTCTGCAGTTGAAGGCCTGTCTATTGA
TGACGAGGACACCATCAGCCCCATTAGCGTGAGCAACTGCGGCACCATCC
AGCGCGCTGGAAAGGGCCGCACCGTCAACCTGGTGACCGATCCCAGTGAA
CGCGTGATCAGCTGCCACGGCACTAATGATCTAATCGAGAACTTCTACAT
CTGCACGCCGGACGAGGTAAAGAAACGACTGGCTAAGCGTCTAAAGAAGG
AGAAAAAGGTCGCCGAAGATGAGGGATCAGACGAAGCAAAACTGTCCACG
GAACAATCGCTGAGCGATGAAATCAAGCGACTGGAAAGCATTCGTGCCAA
GCAAAAGATCAAGTCCATAGATGTGGTTTTGGGCCAGAACCAGGAGCTGC
GTGTCCTTGTTAGTTTGGCCAACAACAGTCTGTGCTTGTACTCGCTGGAG
GCGTCTATCAAAACGCGCAAAGCAACCGATCCCAGCGCGAAACTACTTAG
GTCACTTACTCGTCTGGGGCACCAGTCCGAAGTGCGATCCGTATGCTTCA
GCAACGATTCCCTGGCCATTGGTTCCGGAGCTGGAGAATCCTTTAAGTTC
TGGGATCGAGATGCCATGCAGTGCCTGCGTACTGTGCCAACGGACTACAT
CCTCTGTTCGAAGTTTGTTCCCGGCGATCGCTACGTCCTTCTGGGCATGA
AGAGTGGCAAATTGCTCATTGTGGACGTGGCAGCGGCTGATATAGTGGAG
GAGATTCCGGCTCACGAAGGCGAACTTTGGTCCATTGCCATACTGCCCGA
TCAAAAGGGTTGCGTCACTGGCAGCGGCGATACCACGGTTAAGATCTGGA
CATTCGAGCTGATCGATGCCGGCGAGGGTGCTGCCCAAACCAAGGTGCTG
TCCCTGCTGCACAAAAACACACTGAAGCTGGAGGAGACCGTGCTCTGTTT
GGCCGTTAGTCCGGACATGAAGTACCTGGCTGTGGGCTTGTTGGACGCCA
CCGTGAAGGTTTTCTTCCTGGACACCTTTAAGTTCTACCTATCACTGTAC
GGCCACAAGTTACCTGTGATCTGCCTGGACATCTCCTACGACTCCAATCT
CATTGTAACAGGATCAGCAGATCGTAACGTAAAAGTTTGGGGCTTAAATT
TCGGAGACTGTCATCGTTCCATTTTTGCACACGACGATTCGGTAATGAGT
GTACAGTTTATACCCAGGACGCACATGTTCTTCACGTGTGGAAAGGATGG
AAAGGTGAAGCAGTGGGATGGCGATAACTTCGAGAAGATTCTTACCTTAC
CTGGACACATAGGCGAAGCGTATTGTCTGTCCGTTTCTCCGAATGGCCGA
TATTTGGTCACCTGCGGATCAGATCGAACTCTTAGAATGTTCGAGCGAAC
AGATGAGACTATTGTGTTGAAGGATGTGCAGGAGGAGGAGCGAGAGCAAA
TGGAGAATGAGCAACTGGCCACGGGCGAGGACAACACAGTTCCCTTGCTT
CCGGGTCTGAAGATGCCGTCACGCAAAACAGTGGGTTCCGAGCAGTCTGC
TGAATCGATACTCGAATGTCTGGAGATATCCAAACAGTTCGAGCTCGAGG
CGGAGGAGAAACCCGAGTTACATCCTCTGATGCAGGCTTTGCAGGTTAAG
AATCCCGAAGACTTCCTGGTCAGCACCCTGATGAGGATACGTGCGTCCGA
TCTGGAGGAGGCACTTCTTCTACTCCCCTTCTCCACTGTGTGCGAAGTCC
TCGAACGCCTGCCCACTCTGCTGACCCAGCGACCCGACCAACTGGAGCTG
CTTTGCCGCGTCACCATCTTCCTGTTCAAGGTGCACATGAAGCCCATTTC
GGCGGCTAAGAACATGAAGCCGCTGCTCGTCAAGCTGCTCTCGATGCTCA
AGCGGGACGTTGGTCAGCTGCGCGATGTCTTAGGATGGAACCTGCACGGT
CTGGCCCTGCTGCAAACGGAAGTGGAGCAGCGCGATGGTGTCCAGCTCTT
CAGGGAGGCCACACAGACCCGCAAGAAACGGGATAAGAAGCGGAGAGAAG
CCAGCAAGCGGAGGCTGCAGATTCAAATGGTTGCAAGCTTTCTAGACCAT
BO11165.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8064-RA | 2769 | CG8064-PA | 1..2766 | 17..2782 | 13830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8064-RA | 2901 | CG8064-RA | 75..2840 | 17..2782 | 13830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18283955..18286563 | 174..2782 | 13045 | 100 | Plus |
| 3R | 32079331 | 3R | 18283734..18283891 | 17..174 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:49:58 has no hits.
BO11165.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:07 Download gff for
BO11165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 1..2769 | 17..2785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:45 Download gff for
BO11165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 73..2838 | 17..2782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:52 Download gff for
BO11165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 73..2838 | 17..2784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:07 Download gff for
BO11165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 73..2838 | 17..2782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:37 Download gff for
BO11165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8064-RA | 75..2840 | 17..2784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:37 Download gff for
BO11165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18283734..18283891 | 17..174 | 100 | -> | Plus |
| 3R | 18283956..18286563 | 175..2784 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:52 Download gff for
BO11165.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14109456..14109613 | 17..174 | 100 | -> | Plus |
| arm_3R | 14109678..14112285 | 175..2784 | 99 | | Plus |
BO11165.pep Sequence
Translation from 16 to 2800
> BO11165.pep
MGLTKQYLAYRAIDSFNIITSGRANVNFAVVDKTEGRYVAAPAAENVIVW
DLRMGDRKLTLRREKFEVTSLRVSPDHLHIAVGYADGMVQIFDLSSDRYY
DPICTLALHKNAVSILRYDLQGMRLVSGGLDTELVVVDVVEQAGRARLSG
HNAAITDAHFLQRLVDESIVVSCSKDTQIKFWNLETQFCFKTIVDNRTEV
WALAFIGNLMVAGAGESGMNVYRLRKHDGAITETLESAVEGLSIDDEDTI
SPISVSNCGTIQRAGKGRTVNLVTDPSERVISCHGTNDLIENFYICTPDE
VKKRLAKRLKKEKKVAEDEGSDEAKLSTEQSLSDEIKRLESIRAKQKIKS
IDVVLGQNQELRVLVSLANNSLCLYSLEASIKTRKATDPSAKLLRSLTRL
GHQSEVRSVCFSNDSLAIGSGAGESFKFWDRDAMQCLRTVPTDYILCSKF
VPGDRYVLLGMKSGKLLIVDVAAADIVEEIPAHEGELWSIAILPDQKGCV
TGSGDTTVKIWTFELIDAGEGAAQTKVLSLLHKNTLKLEETVLCLAVSPD
MKYLAVGLLDATVKVFFLDTFKFYLSLYGHKLPVICLDISYDSNLIVTGS
ADRNVKVWGLNFGDCHRSIFAHDDSVMSVQFIPRTHMFFTCGKDGKVKQW
DGDNFEKILTLPGHIGEAYCLSVSPNGRYLVTCGSDRTLRMFERTDETIV
LKDVQEEEREQMENEQLATGEDNTVPLLPGLKMPSRKTVGSEQSAESILE
CLEISKQFELEAEEKPELHPLMQALQVKNPEDFLVSTLMRIRASDLEEAL
LLLPFSTVCEVLERLPTLLTQRPDQLELLCRVTIFLFKVHMKPISAAKNM
KPLLVKLLSMLKRDVGQLRDVLGWNLHGLALLQTEVEQRDGVQLFREATQ
TRKKRDKKRREASKRRLQIQMVASFLDH
BO11165.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8064-PA | 922 | CG8064-PA | 1..922 | 1..922 | 4702 | 100 | Plus |
| wds-PB | 361 | CG17437-PB | 68..269 | 480..693 | 219 | 27.9 | Plus |
| wds-PA | 361 | CG17437-PA | 68..269 | 480..693 | 219 | 27.9 | Plus |
| slmb-PC | 510 | CG3412-PC | 215..439 | 410..651 | 211 | 25.7 | Plus |
| slmb-PA | 510 | CG3412-PA | 215..439 | 410..651 | 211 | 25.7 | Plus |
| wds-PB | 361 | CG17437-PB | 72..323 | 442..702 | 191 | 23 | Plus |
| wds-PA | 361 | CG17437-PA | 72..323 | 442..702 | 191 | 23 | Plus |
| wds-PB | 361 | CG17437-PB | 112..360 | 401..653 | 189 | 23.4 | Plus |
| wds-PA | 361 | CG17437-PA | 112..360 | 401..653 | 189 | 23.4 | Plus |
| wds-PB | 361 | CG17437-PB | 46..226 | 518..693 | 180 | 26.5 | Plus |
| wds-PA | 361 | CG17437-PA | 46..226 | 518..693 | 180 | 26.5 | Plus |
| slmb-PC | 510 | CG3412-PC | 226..358 | 557..692 | 174 | 29.2 | Plus |
