Clone Sequence Records
BO11170.3prime Sequence
716 bp (715 high quality bases) assembled on 2006-04-19
> BO11170.3prime
ATGGTCTAGAAAGCTTGCGCCCTGCAGCGCAGTGACCTCCTCCTCCAGTT
CGGCGTCCACCTCGTCGATCTTGGACCCGGTGCACCCTCTGCACTTGCAG
CAGATGATGCAGGGAGCAGCCAAGAGCAGCAGCGGCGAGGCCACCAGCAG
CAGAATGCCAAAGCCGGCGAAGATCCCAATCACTTGGGCACGATGCCAGA
CCACCGAGGCCCGCGAGTGCCCCAGCTTGTTCTTGCACGGTCCCTTGTCG
TAGTGGCGCAGCAGGAAGTCATCATCCAAACTGGCCAGGCAGTACCAGCA
GAAGACGTGCTTGCAGCGCTTGCACATCATCTGGGCGCAGCCCTCGTCCT
TTTCGATGGGCACCGCGCACATGGGGCAGCACTTGATCAGTTCGTTGTCG
AACGGTATGCCAATGTCGTCCTGGCCATCGGCAATTAGGCGTCTTCCAAA
CTCGTCGCAGCTTATGTTCGGATGGTACGCCTTTTTGCAGAGGCCGCAGA
ATTCGTCCTTGCAAGAGGGACAGTGAACAGACACCGAGAGAACGGGAGCT
CCGTTTCCGGCCGCGGCACCTGTGCTTCCGTTTCCGGCCACCTCCTGCTG
TGGACTGTAGCTCTGCGAGGTCGACGGCGACTCGTCCATTTGGCAAATGA
CGCTGGACTGGCCAGGCTGTGCTGCTGCACCCACCGTGCAGATGGTCTCG
CAGCCAGCCCGTGGAC
BO11170.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33144-PA | 3309 | CG33144-RA | 2609..3306 | 716..19 | 3490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33144-RB | 5061 | CG33144-RB | 3486..4183 | 716..19 | 3490 | 100 | Minus |
| CG33144-RA | 4539 | CG33144-RA | 3306..4003 | 716..19 | 3490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10740932..10741186 | 19..273 | 1275 | 100 | Plus |
| 2R | 25286936 | 2R | 10741581..10741819 | 478..716 | 1195 | 100 | Plus |
| 2R | 25286936 | 2R | 10741243..10741448 | 273..478 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:07:20 has no hits.
BO11170.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:59:59 Download gff for
BO11170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-PA | 2609..3309 | 18..716 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:16 Download gff for
BO11170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-PA | 2609..3309 | 18..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:22:09 Download gff for
BO11170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 3306..4003 | 19..716 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:43 Download gff for
BO11170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 3306..4003 | 19..716 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:43 Download gff for
BO11170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10741581..10741819 | 478..716 | 100 | | Plus |
| 2R | 10740932..10741186 | 19..273 | 100 | <- | Plus |
| 2R | 10741244..10741447 | 274..477 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:22:09 Download gff for
BO11170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6628437..6628691 | 19..273 | 100 | <- | Plus |
| arm_2R | 6628749..6628952 | 274..477 | 100 | <- | Plus |
| arm_2R | 6629086..6629324 | 478..716 | 100 | | Plus |
BO11170.5prime Sequence
718 bp (612 high quality bases) assembled on 2006-04-19
> BO11170.5prime
GAAGTTATCAGTCGACATGCGGCCACCAATGGCGATGCCATCGATGCAAG
CGTCGACGGGTTTGCAGCCGACTGAAGTGCATCCGGTGCAACAGCTGCAC
TTGCATGCCACGCCCTCAAATCCTTCGGATATACACCAGGATCGGAGTCC
ACACAACCATAACGCCAAACTGCCACCGCTGGAACTGCTGGTGGAGAACA
AGATTAGCTACAGCAGCTACCAGCAGCACGCCAAGGACCTCAAGCACCAG
AGTCACAATCAAAACCGATCCAAGAGAAGTTCCCTCAGCAGTCCCTCGTC
CAGCGAGGATTGCGTTAGTGCTGCCAGGGCCAATATCTTTGATGACGCCG
CCGAGAACTTCGTGATCAATTTCCCCTCGGAGTCGGCCACCTCGCAGCAT
TTGCTGCCACTGTCGGAGACTGTGCCCCTGCTCACCCACATCGAGGCCAC
GGTGGTGGATAAGCAGCGCTCCATAAGGCTGAACAAGAACAGTGCCTCGC
TGATCTTCACGAAGAAGGAACTTAACCAGGGAACCAGGGAACATCATCAT
CAGCACAATAATCAGCAGCACCAGCAGCAGCAACGGCGTCCGCACCATAG
CAGTTTGTACGGAGTGGGCAGGAAGCCGACCAAGCACCTACCGCCAACTA
GAGGACACCACCAGAGGCGCAGTCTACCTCTTAGCTACAACAACAATCTG
GTGACCACCGCTCCATCA
BO11170.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33144-PA | 3309 | CG33144-RA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33144-RB | 5061 | CG33144-RB | 878..1579 | 17..718 | 3510 | 100 | Plus |
| CG33144-RA | 4539 | CG33144-RA | 698..1399 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10756749..10757450 | 718..17 | 3510 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 01:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6822 | 511..597 | 164 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6895 | 524..696 | 156 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2380 | 540..597 | 155 | 74.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2510 | 540..672 | 144 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6824 | 540..587 | 141 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6780 | 540..597 | 137 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2470..2534 | 540..603 | 132 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2668 | 501..605 | 132 | 63.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1047..1161 | 488..597 | 131 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1525..1582 | 540..597 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6855 | 540..597 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2488..2557 | 540..610 | 127 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1113 | 549..602 | 119 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 540..584 | 116 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2869 | 511..597 | 111 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2425..2469 | 540..584 | 108 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6950 | 538..674 | 107 | 56.8 | Plus |
BO11170.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:01 Download gff for
BO11170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-PA | 1..701 | 17..717 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:18 Download gff for
BO11170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-PA | 1..701 | 17..717 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:22:32 Download gff for
BO11170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 696..1398 | 14..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:29 Download gff for
BO11170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 696..1398 | 14..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:29 Download gff for
BO11170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10756750..10757452 | 14..717 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:22:32 Download gff for
BO11170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6644255..6644957 | 14..717 | 99 | | Minus |
BO11170.complete Sequence
3340 bp assembled on 2008-01-16
GenBank Submission: FJ632018
> BO11170.complete
GAAGTTATCAGTCGACATGCGGCCACCAATGGCGATGCCATCGATGCAAG
CGTCGACGGGTTTGCAGCCGACTGAAGTGCATCCGGTGCAACAGCTGCAC
TTGCATGCCACGCCCTCAAATCCTTCGGATATACACCAGGATCGGAGTCC
ACACAACCATAACGCCAAACTGCCACCGCTGGAACTGCTGGTGGAGAACA
AGATTAGCTACAGCAGCTACCAGCAGCACGCCAAGGACCTCAAGCACCAG
AGTCACAATCAAAACCGATCCAAGAGAAGTTCCCTCAGCAGTCCCTCGTC
CAGCGAGGATTGCGTTAGTGCTGCCAGGGCCAATATCTTTGATGACGCCG
CCGAGAACTTCGTGATCAATTTCCCCTCGGAGTCGGCCACCTCGCAGCAT
TTGCTGCCACTGTCGGAGACTGTGCCCCTGCTCACCCACATCGAGGCCAC
GGTGGTGGATAAGCAGCGCTCCATAAGGCTGAACAAGAACAGTGCCTCGC
TGATCTTCACGAAGAAGGAACTTAACCAGGGAACCAGGGAACATCATCAT
CAGCACAATAATCAGCAGCACCAGCAGCAGCAACGGCGTCCGCACCATAG
CAGTTTGTACGGAGTGGGCAGGAAGCCGACCAAGCACCTACCGCCAACTA
GAGGACACCACCAGAGGCGCAGTCTACCTCTTAGCTACAACAACAATCTG
GTGACCACCGCTCCATCAGCAGGTGGGGCAGGAGGTCCCGGTGGAGCAGC
CAAACTTGTGCCGCTCAAGCAGCAGCATCAGCACCACGGAGCGGGCCACA
CGGCACCACCCACGGCGAACGTCGTTGTTGCCGGTGGAGCGGGAGCGGCG
GCTCCGTCTGCCCGCAAGCAGCTCTCCTACTCCTGGTACGCGCCCGTCTA
CAGTGCGCTCGAGGAGGAGCTGGAGCAGGACTCGCGGGACTCCTCGCCAA
TCCACAATCTGGCCAACACAAAGCAGCACCAGCGGTCCGCCAGCCAAAAG
GCATCCACCGCCCTGCATGCCACGCCCCGCCACGATCGCGCCCACGATTC
CGCCGACGCCGAGACGGTTGCGCTGCTGGACACGCAGACGCGCAGCAAGA
TCATCATTTCCTCGGCGAATGGTGACGCTGGCGGAGCGGGTGCAGGAGTT
GGATTCGGTGGAGGCGGGGGCGGAGGATCTGGAAACGGCGGAGTACTGGC
AGCGAACGGAGGAGGAGATCTGGAGAGCTCGCTGGGACTATCTGGTGGTG
GGCAATTGCCACGAAGGCGTCGCATCGAGAACTTTCTCAAATCGCTGGTG
GGACTCAAGGCGAGTAGCGGTCGCGGAGGAGGTGGTGGTGGCAATGTTGG
TGGGGGCGGGGCAGTACCAGATCGGGAACGTCCTGCCTCCCCAGAAATTC
GGATCACCCGCACTCCATCCGAGCAGGATGTCGTGCTGCGAGATCCTTCT
GGCCGACAGCTAGCCAACGGCCATGGTCGAGGCAGCCTGAGCATCAGCGG
TTCGAGCAGCTCCTTGAATGTGGTCCAGCAGAAGATATGGCATATCATGC
GACGCGAGGGTAGCGCTAGCAGCTTGCACCAGGAGAAGTCCCAGTCGATT
GTCCAGTACACGGGACTGCGAAAGTGCGAAACGGTCCTAGCACTCACCCG
TCAATCGCAATCGCATGGCCACGTTCACGGCTTGAGCCAGAGTCGAAGTC
AGGGTCACTCCTTGGCGGTCCATGGCAGCGGGATCTTCAGCTCGGGTGGC
GTGGAGCAGATTCGACCACTGAATCGCCTGCGGAACAGCGTGAGCAGCAT
TAACGGCGTGGGTACCTGTTCGCGCTGCTCCAGTCTGTTATCCCTGGCTG
CCTCCGGATCGCGTTACTCCCTGTCGAATGGATTTGCGCCCCGGCCAACT
TCGGCCCTCAATCACCTAGAAGCTGGATGGGAGGACGATCAACGGCGCGC
GCAGGAGCCGCATATCAACGTGAATGCCCAGATCAGACTGAGCGGTGGAG
CAACTGCCAACTCGACCAGTCCCAGTCCGCCGTCCAATGTGACCACGGCC
ACATTGCACTCCAGTTCCGCCAATAATCTGAATCAGGAACCGCAGCAGTC
CACGTCGACGCCCGCCACCACGCCCACTGAGACACCTGGGAGCGGCGAAT
TGGGACCGTTCGGTACCAATCATGCATATCCATTGACCGTAAGCTCCCTG
CTCTCCATGGCCAGTGCGAATCAGGCGGCGCAGGCATGCTGCGTTCGTGA
TGGGATTGCACTGAAGCGACGAGAGATGTTGGCCTCCGCCGATGTCACAC
CTTCGGTGGGCACCCCGGCCACGCCCACCACCGCTTTCAAGCCCTTCACG
TGCAAGCTGTGCCTGATCGATGTGGAGGACGTGGGCGAGGCCATGGCGCT
TCAGCAGTGCGGCTGCCAATTTTGTATCGAGTGCATGCGTGCCTACGTTG
AGTTCGAGATTTCCGAGGGCGCTTACGAGATCTCCTGTCCGGACGCCACG
TGCCCGGCCCAGGGTGCCATTTCCCTGCCCGAGATAGCGAACCTAACTAC
AACGAATCTGCTAAAGAAGCATCATAGATATCGCCTAAATCGAGAAATCG
AATTGGACAAGACGCGCACCTGGTGTCCACGGGCTGGCTGCGAGACCATC
TGCACGGTGGGTGCAGCAGCACAGCCTGGCCAGTCCAGCGTCATTTGCCA
AATGGACGAGTCGCCGTCGACCTCGCAGAGCTACAGTCCACAGCAGGAGG
TGGCCGGAAACGGAAGCACAGGTGCCGCGGCCGGAAACGGAGCTCCCGTT
CTCTCGGTGTCTGTTCACTGTCCCTCTTGCAAGGACGAATTCTGCGGCCT
CTGCAAAAAGGCGTACCATCCGAACATAAGCTGCGACGAGTTTGGAAGAC
GCCTAATTGCCGATGGCCAGGACGACATTGGCATACCGTTCGACAACGAA
CTGATCAAGTGCTGCCCCATGTGCGCGGTGCCCATCGAAAAGGACGAGGG
CTGCGCCCAGATGATGTGCAAGCGCTGCAAGCACGTCTTCTGCTGGTACT
GCCTGGCCAGTTTGGATGATGACTTCCTGCTGCGCCACTACGACAAGGGA
CCGTGCAAGAACAAGCTGGGGCACTCGCGGGCCTCGGTGGTCTGGCATCG
TGCCCAAGTGATTGGGATCTTCGCCGGCTTTGGCATTCTGCTGCTGGTGG
CCTCGCCGCTGCTGCTCTTGGCTGCTCCCTGCATCATCTGCTGCAAGTGC
AGAGGGTGCACCGGGTCCAAGATCGACGAGGTGGACGCCGAACTGGAGGA
GGAGGTCACTGCGCTGCAGGGCGCAAGCTTTCTAGACCAT
BO11170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33144-RB | 3309 | CG33144-PB | 1..3306 | 17..3322 | 16530 | 100 | Plus |
| CG33144-RA | 3309 | CG33144-PA | 1..3306 | 17..3322 | 16530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33144-RB | 5061 | CG33144-RB | 878..4183 | 17..3322 | 16530 | 100 | Plus |
| CG33144-RA | 4539 | CG33144-RA | 698..4003 | 17..3322 | 16530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10754909..10756408 | 2431..932 | 7485 | 99.9 | Minus |
| 2R | 25286936 | 2R | 10756529..10757450 | 938..17 | 4610 | 100 | Minus |
| 2R | 25286936 | 2R | 10741581..10741851 | 2863..2593 | 1355 | 100 | Minus |
| 2R | 25286936 | 2R | 10740932..10741186 | 3322..3068 | 1275 | 100 | Minus |
| 2R | 25286936 | 2R | 10741243..10741448 | 3068..2863 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 10741911..10742075 | 2594..2430 | 825 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6822 | 511..597 | 164 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2512 | 540..730 | 158 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6895 | 524..696 | 156 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6913 | 540..734 | 146 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2510 | 540..672 | 144 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7007 | 540..779 | 142 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2470..2534 | 540..603 | 132 | 72.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2668 | 501..605 | 132 | 63.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1047..1161 | 488..597 | 131 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1525..1582 | 540..597 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6855 | 540..597 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2488..2557 | 540..610 | 127 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1113 | 549..602 | 119 | 70.9 | Plus |
BO11170.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:30 Download gff for
BO11170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 1..3309 | 17..3323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:33:06 Download gff for
BO11170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 674..3979 | 17..3324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:05 Download gff for
BO11170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 698..4003 | 17..3324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:30 Download gff for
BO11170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 672..3979 | 14..3322 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:35 Download gff for
BO11170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33144-RA | 698..4003 | 17..3324 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:35 Download gff for
BO11170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10740930..10741186 | 3068..3324 | 99 | <- | Minus |
| 2R | 10741244..10741447 | 2864..3067 | 100 | <- | Minus |
| 2R | 10741581..10741849 | 2595..2863 | 100 | <- | Minus |
| 2R | 10741911..10742073 | 2432..2594 | 100 | <- | Minus |
| 2R | 10754909..10756402 | 938..2431 | 100 | <- | Minus |
| 2R | 10756530..10757450 | 17..937 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:05 Download gff for
BO11170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6628435..6628691 | 3068..3324 | 99 | <- | Minus |
| arm_2R | 6628749..6628952 | 2864..3067 | 100 | <- | Minus |
| arm_2R | 6629086..6629354 | 2595..2863 | 100 | <- | Minus |
| arm_2R | 6629416..6629578 | 2432..2594 | 100 | <- | Minus |
| arm_2R | 6642414..6643907 | 938..2431 | 100 | <- | Minus |
| arm_2R | 6644035..6644955 | 17..937 | 100 | | Minus |
BO11170.pep Sequence
Translation from 16 to 3340
> BO11170.pep
MRPPMAMPSMQASTGLQPTEVHPVQQLHLHATPSNPSDIHQDRSPHNHNA
KLPPLELLVENKISYSSYQQHAKDLKHQSHNQNRSKRSSLSSPSSSEDCV
SAARANIFDDAAENFVINFPSESATSQHLLPLSETVPLLTHIEATVVDKQ
RSIRLNKNSASLIFTKKELNQGTREHHHQHNNQQHQQQQRRPHHSSLYGV
GRKPTKHLPPTRGHHQRRSLPLSYNNNLVTTAPSAGGAGGPGGAAKLVPL
KQQHQHHGAGHTAPPTANVVVAGGAGAAAPSARKQLSYSWYAPVYSALEE
ELEQDSRDSSPIHNLANTKQHQRSASQKASTALHATPRHDRAHDSADAET
VALLDTQTRSKIIISSANGDAGGAGAGVGFGGGGGGGSGNGGVLAANGGG
DLESSLGLSGGGQLPRRRRIENFLKSLVGLKASSGRGGGGGGNVGGGGAV
PDRERPASPEIRITRTPSEQDVVLRDPSGRQLANGHGRGSLSISGSSSSL
NVVQQKIWHIMRREGSASSLHQEKSQSIVQYTGLRKCETVLALTRQSQSH
GHVHGLSQSRSQGHSLAVHGSGIFSSGGVEQIRPLNRLRNSVSSINGVGT
CSRCSSLLSLAASGSRYSLSNGFAPRPTSALNHLEAGWEDDQRRAQEPHI
NVNAQIRLSGGATANSTSPSPPSNVTTATLHSSSANNLNQEPQQSTSTPA
TTPTETPGSGELGPFGTNHAYPLTVSSLLSMASANQAAQACCVRDGIALK
RREMLASADVTPSVGTPATPTTAFKPFTCKLCLIDVEDVGEAMALQQCGC
QFCIECMRAYVEFEISEGAYEISCPDATCPAQGAISLPEIANLTTTNLLK
KHHRYRLNREIELDKTRTWCPRAGCETICTVGAAAQPGQSSVICQMDESP
STSQSYSPQQEVAGNGSTGAAAGNGAPVLSVSVHCPSCKDEFCGLCKKAY
HPNISCDEFGRRLIADGQDDIGIPFDNELIKCCPMCAVPIEKDEGCAQMM
CKRCKHVFCWYCLASLDDDFLLRHYDKGPCKNKLGHSRASVVWHRAQVIG
IFAGFGILLLVASPLLLLAAPCIICCKCRGCTGSKIDEVDAELEEEVTAL
QGASFLDH
BO11170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33144-PB | 1102 | CG33144-PB | 1..1102 | 1..1102 | 5803 | 100 | Plus |
| CG33144-PA | 1102 | CG33144-PA | 1..1102 | 1..1102 | 5803 | 100 | Plus |
| Smr-PF | 3601 | CG4013-PF | 86..500 | 25..469 | 167 | 21.4 | Plus |
| Smr-PE | 3601 | CG4013-PE | 86..500 | 25..469 | 167 | 21.4 | Plus |
| Smr-PD | 3601 | CG4013-PD | 86..500 | 25..469 | 167 | 21.4 | Plus |
