Clone Sequence Records
BO11176.3prime Sequence
854 bp (790 high quality bases) assembled on 2006-04-19
> BO11176.3prime
ATGGTCTAGAAAGCTTGCATACAAAATGGGACGCTGGGGCATGCAGAGAT
TGTAGTAGCTGCCCTTGGCCCAAAAGTCCATGCCCTTCCAGCCGCACCAA
CCTTTAATTTGAATGGTGGCCAAATCATCGGCACCTGTATAATGGGGATC
CAAGATGAGGAACTTCACCTGACCCGTCTGCACGCAGTAGTCCACCCCGA
TAATGGTGTGGGCCAGAACACCGCCACCAATCATTACCGGTGTACCTTGC
GTTTGGAAATGCATCGCCAGCTCGGAGGCAATAGTCGCCAGCTCAGCTCC
AGAGGCTACGTGCAGAATTTTTGAGTCCACGTTAAGGAATCCCTGCAGAC
ACATGCTGATTTCTGTGGAACCAATCCACTGAGAAGAACCCACGAATGCA
GCAGGTTTGTCGTTGATCTTGTGAAGGTATTCCTGCACCTCCAGATGCGT
CGGAATCGGTGCGTTCGTATAACCCTGCAGCACAAACCAGGAGCAGATCG
TCTGCAGCGAGCGATATGCGCATCCCCATCCCTTGTCCTGCACCTGCTGT
TGCAGGTAATGATAGTAATGGTAGTTACCATTTACTAAGTACTCTTTGCC
GTCGACAACTCCACTGGGACGTAATCCGATGTGGGTATTTAGCAGCGGAG
TCCATGGTGCGTCCTCCGTTTCACCTAGGAAAAGCATCTGGTTGGCCCTG
CGGAAATAAGGACGACTGATGGGCAAAGCAAACTGTCGATGCAGGCGCTT
GCGTCTCATTAGCATGCTTGGTGTATCGTCACTCAGACCTTCCAGATAGG
CGCAGCTCACGAAGTGACCAAACTCTTGTGGGTAGAAGTGATAGCTAGCG
GGCA
BO11176.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-PA | 1824 | CG16979-RA | 986..1821 | 854..19 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-RA | 2046 | CG16979-RA | 1080..1915 | 854..19 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15577708..15578543 | 854..19 | 4180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:24:52 has no hits.
BO11176.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:13 Download gff for
BO11176.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-PA | 987..1824 | 18..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:33 Download gff for
BO11176.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-PA | 987..1824 | 18..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:17:54 Download gff for
BO11176.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 1081..1921 | 11..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:11:10 Download gff for
BO11176.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 1081..1921 | 11..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:11:10 Download gff for
BO11176.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15577709..15578549 | 11..853 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:17:54 Download gff for
BO11176.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15570809..15571649 | 11..853 | 99 | | Minus |
BO11176.5prime Sequence
852 bp (822 high quality bases) assembled on 2006-04-19
> BO11176.5prime
GAAGTTATCAGTCGACATGCTACCCAAACTAAAAATATCCGCATTCCTGT
TGAAGCGCCTGGAGCGAACAAAGCAGCAGTGCAGTGGATGCTTGTTTGGA
GTTTTCTATGGAGAAGGTACCTTACTCCTACTGAGCTTCAACATTGAGTC
CAGTTTGGGACAACTGAACTACGAGCAGATCCAACACAGATTCCCGGCGG
AACTGGATTTATGCGGACTGGTCAAGTTTGGTGGTTGCACCGATGGAGAG
GCGCACCTTAATGAGGTCATCAAATCTGTGGATATCACCGATAATCCCAT
CCTACTGCAATGCGAATTGGGCACCTTGGTGGGCTTGCGGGCCTCGTTTT
TCGTCCATGGAAAACTGGAGGAGGTACCCTACGAGGTTATGGAGGCACAT
CAGCTGTACAACGACTTCTGCTTCACCCGGCTGCAGTGCGGATTCTTTCT
GCAAACGGCCGCCACACCGGAATCCGTGGCCCGGGAAATGCATGTGCTGC
GCAAAAGGGTAGCCGACGGAAATCTAGTGTTTAACGTTCCGCAGACAAAG
ATTTTCATTAATAACTACGGGCCACTGGACAAACAGTTTAGCGGCGATTC
CCAAATTCAGGATCTTATAGACGTCATTCCAACTCCAGGACATGAAAAGG
AGACTGCCAGTGTCGACAAAAAGAAGCTTAAAGGTCAGAACACGCCAGTC
AAGAGACTGGCTCCGACTGGCTGCGACTACGAGGTGATCCCCATCGATGT
GATGCGCTCGCGCAGTCGTGATCCCGTGTCCGGAGAGCCACCTCATCCGG
CACTCAGCATTGCTGTGACAAATGAAGAACAGATCCGAGTCCAGGTACCA
TT
BO11176.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-PA | 1824 | CG16979-RA | 1..836 | 17..852 | 4130 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-RA | 2046 | CG16979-RA | 95..930 | 17..852 | 4150 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15576760..15577558 | 54..852 | 3965 | 99.7 | Plus |
| 3L | 28110227 | 3L | 15576664..15576702 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:39:13 has no hits.
BO11176.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:14 Download gff for
BO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:35 Download gff for
BO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:47:59 Download gff for
BO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 84..930 | 5..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:38 Download gff for
BO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 84..930 | 5..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:38 Download gff for
BO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15576668..15576702 | 21..55 | 100 | -> | Plus |
| 3L | 15576762..15577558 | 56..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:47:59 Download gff for
BO11176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15569768..15569802 | 21..55 | 100 | -> | Plus |
| arm_3L | 15569862..15570658 | 56..852 | 99 | | Plus |
BO11176.complete Sequence
1855 bp (1855 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ632020
> BO11176.complete
GAAGTTATCAGTCGACATGCTACCCAAACTAAAAATATCCGCATTCCTGT
TGAAGCGCCTGGAGCGAACAAAGCAGCAGTGCAGTGGATGCTTGTTTGGA
GTTTTCTATGGAGAAGGTACCTTACTCCTACTGAGCTTCAACATTGAGTC
CAGTTTGGGACAACTGAACTACGAGCAGATCCAACACAGATTCCCGGCGG
AACTGGATTTATGCGGACTGGTCAAGTTTGGTGGTTGCACCGATGGAGAG
GCGCACCTTAATGAGGTCATCAAATCTGTGGATATCACCGATAATCCCAT
CCTACTGCAATGCGAATTGGGCACCTTGGTGGGCTTGCGGGCCTCGTTTT
TCGTCCATGGAAAACTGGAGGAGGTACCCTACGAGGTTATGGAGGCACAT
CAGCTGTACAACGACTTCTGCTTCACCCGGCTGCAGTGCGGATTCTTTCT
GCAAACGGCCGCCACACCGGAATCCGTGGCCCGGGAAATGCATGTGCTGC
GCAAAAGGGTAGCCGACGGAAATCTAGTGTTTAACGTTCCGCAGACAAAG
ATTTTCATTAATAACTACGGGCCACTGGACAAACAGTTTAGCGGCGATTC
CCAAATTCAGGATCTTATAGACGTCATTCCAACTCCAGGACATGAAAAGG
AGACTGCCAGTGTCGACAAAAAGAAGCTTAAAGGTCAGAACACGCCAGTC
AAGAGACTGGCTCCGACTGGCTGCGACTACGAGGTGATCCCCATCGATGT
GATGCGCTCGCGCAGTCGTGATCCCGTGTCCGGAGAGCCACCTCATCCGG
CACTCAGCATTGCTGTGACCAATGAGGAACAGATCCGAGTCCAGGTACCA
TTAGAGATCGAAGCCATGGCCATTCTCTGCCGCAAAACGAAGCTCCAACG
GCTATACGACGTACTCATCGAGAGCATCTGCAGAGGTCTCAGATTGTTCG
AACTGAGCCTGATTGAGCATCTCACGGAGTCGGGAAGTGGAAAGCTGCTG
GTGCCCGCTAGCTATCACTTCTACCCACAAGAGTTTGGTCACTTCGTGAG
CTGCGCCTATCTGGAAGGTCTGAGTGACGATACACCAAGCATGCTAATGA
GACGCAAGCGCCTGCATCGACAGTTTGCTTTGCCCATCAGTCGTCCTTAT
TTCCGCAGGGCCAACCAGATGCTTTTCCTAGGTGAAACGGAGGACGCACC
ATGGACTCCGCTGCTAAATACCCACATCGGATTACGTCCCAGTGGAGTTG
TCGACGGCAAAGAGTACTTAGTAAATGGTAACTACCATTACTATCATTAC
CTGCAACAGCAGGTGCAGGACAAGGGATGGGGATGCGCATATCGCTCGCT
GCAGACGATCTGCTCCTGGTTTGTGCTGCAGGGTTATACGAACGCACCGA
TTCCGACGCATCTGGAGGTGCAGGAATACCTTCACAAGATCAACGACAAA
CCTGCTGCATTCGTGGGTTCTTCTCAGTGGATTGGTTCCACAGAAATCAG
CATGTGTCTGCAGGGATTCCTTAACGTGGACTCAAAAATTCTGCACGTAG
CCTCTGGAGCTGAGCTGGCGACTATTGCCTCCGAGCTGGCGATGCATTTC
CAAACGCAAGGTACACCGGTAATGATTGGTGGCGGTGTTCTGGCCCACAC
CATTATCGGGGTGGACTACTGCGTGCAGACGGGTCAGGTGAAGTTCCTCA
TCTTGGATCCCCATTATACAGGTGCCGATGATTTGGCCACCATTCAAATT
AAAGGTTGGTGCGGCTGGAAGGGCATGGACTTTTGGGCCAAGGGCAGCTA
CTACAATCTCTGCATGCCCCAGCGTCCCATTTTGTATGCAAGCTTTCTAG
ACCAT
BO11176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-RA | 1824 | CG16979-PA | 1..1821 | 17..1837 | 9105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-RA | 2046 | CG16979-RA | 95..1915 | 17..1837 | 9105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15576760..15578543 | 54..1837 | 8920 | 100 | Plus |
| 3L | 28110227 | 3L | 15576664..15576702 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:57:45 has no hits.
BO11176.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:59 Download gff for
BO11176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 1..1824 | 17..1838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:29 Download gff for
BO11176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 88..1925 | 5..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:01 Download gff for
BO11176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 95..1915 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:59 Download gff for
BO11176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 88..1925 | 5..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:05 Download gff for
BO11176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 95..1915 | 17..1839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:05 Download gff for
BO11176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15576664..15576702 | 17..55 | 100 | -> | Plus |
| 3L | 15576762..15578543 | 56..1839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:01 Download gff for
BO11176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15569764..15569802 | 17..55 | 100 | -> | Plus |
| arm_3L | 15569862..15571643 | 56..1839 | 99 | | Plus |
BO11176.pep Sequence
Translation from 16 to 1855
> BO11176.pep
MLPKLKISAFLLKRLERTKQQCSGCLFGVFYGEGTLLLLSFNIESSLGQL
NYEQIQHRFPAELDLCGLVKFGGCTDGEAHLNEVIKSVDITDNPILLQCE
LGTLVGLRASFFVHGKLEEVPYEVMEAHQLYNDFCFTRLQCGFFLQTAAT
PESVAREMHVLRKRVADGNLVFNVPQTKIFINNYGPLDKQFSGDSQIQDL
IDVIPTPGHEKETASVDKKKLKGQNTPVKRLAPTGCDYEVIPIDVMRSRS
RDPVSGEPPHPALSIAVTNEEQIRVQVPLEIEAMAILCRKTKLQRLYDVL
IESICRGLRLFELSLIEHLTESGSGKLLVPASYHFYPQEFGHFVSCAYLE
GLSDDTPSMLMRRKRLHRQFALPISRPYFRRANQMLFLGETEDAPWTPLL
NTHIGLRPSGVVDGKEYLVNGNYHYYHYLQQQVQDKGWGCAYRSLQTICS
WFVLQGYTNAPIPTHLEVQEYLHKINDKPAAFVGSSQWIGSTEISMCLQG
FLNVDSKILHVASGAELATIASELAMHFQTQGTPVMIGGGVLAHTIIGVD
YCVQTGQVKFLILDPHYTGADDLATIQIKGWCGWKGMDFWAKGSYYNLCM
PQRPILYASFLDH
BO11176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-PA | 607 | CG16979-PA | 1..607 | 1..607 | 3225 | 100 | Plus |
| CG30157-PB | 234 | CG30157-PB | 28..234 | 398..604 | 264 | 33.5 | Plus |
| CG30157-PA | 234 | CG30157-PA | 28..234 | 398..604 | 264 | 33.5 | Plus |
