Clone BO11180 Report

Search the DGRC for BO11180

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:111
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG3624-RA
Protein status:BO11180.pep: validated full length
Sequenced Size:622

Clone Sequence Records

BO11180.3prime Sequence

620 bp (619 high quality bases) assembled on 2006-04-19

> BO11180.3prime
ATGGTCTAGAAAGCTTGCATGTGCGCCCATCCCCAGGAGGAGCAACACGG
TCGATGCCAGGACAGTGCATCCCAGAAAACTGCTCGCAGATCCCGCCGCG
GATGTGGAGCTCTCCGGGGCAATGGCGTCCAGGGAATGCTCGGCGATGGT
CACCTTCGTGTTGACCACGGATCCGGAGGGCAGAACCTTGCAGAGATAGC
TGCCAGCCACCTGGGGACTCGCCTTCAGGATGGTCAGGTCGTAGTTGGCG
TCCAGTTTGAAGTTGGGCTGCACCAGGTTCTTGCCATTGGAAATGACATT
ATCGCCGAAGTACCACAAGACCACCACGTCTGAGCTGTGCAAATTGCTTC
CCACATCGCACTTGAGAACCACATCCTCGCCACGGATTCCCGTCACACTG
AGGGTCTTGTTGATCTTTTCGCTGGCTACAGGATTGGGGGACTTCGTCTG
CGGACTGGGCGCACTCTGGTCTTCGCCTCCGTAGTCGAAGTCATCATCGG
CCTGCATTTGGTCATCGTCCATCGAGGATTGTGGGTAGGAGATCACCGCG
GCACTGCCCACGATCAGTAGGAGTCCGGCGATTAGAAGATCTGTTCTGGA
CATCATGTCGACTGATAACT

BO11180.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3624-PA 591 CG3624-RA 1..588 606..19 2940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
babos-RB 1303 CG3624-RB 361..948 606..19 2940 100 Minus
babos-RA 1116 CG3624-RA 361..948 606..19 2940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22394231..22394553 19..341 1615 100 Plus
2R 25286936 2R 22394612..22394816 342..546 1025 100 Plus
2R 25286936 2R 22401639..22401699 546..606 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:40:40 has no hits.

BO11180.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:19 Download gff for BO11180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3624-PA 1..591 18..606 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:42 Download gff for BO11180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3624-PA 1..591 18..606 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:58:32 Download gff for BO11180.3prime
Subject Subject Range Query Range Percent Splice Strand
babos-RA 354..954 11..614 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:35 Download gff for BO11180.3prime
Subject Subject Range Query Range Percent Splice Strand
babos-RA 354..954 11..614 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:36:35 Download gff for BO11180.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22394612..22394815 342..545 100 <- Plus
2R 22401639..22401706 546..614 94   Plus
2R 22394225..22394553 11..341 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:58:32 Download gff for BO11180.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18281730..18282058 11..341 98 <- Plus
arm_2R 18282117..18282320 342..545 100 <- Plus
arm_2R 18289144..18289211 546..614 94   Plus

BO11180.5prime Sequence

620 bp (619 high quality bases) assembled on 2006-04-19

> BO11180.5prime
GAAGTTATCAGTCGACATGATGTCCAGAACAGATCTTCTAATCGCCGGAC
TCCTACTGATCGTGGGCAGTGCCGCGGTGATCTCCTACCCACAATCCTCG
ATGGACGATGACCAAATGCAGGCCGATGATGACTTCGACTACGGAGGCGA
AGACCAGAGTGCGCCCAGTCCGCAGACGAAGTCCCCCAATCCTGTAGCCA
GCGAAAAGATCAACAAGACCCTCAGTGTGACGGGAATCCGTGGCGAGGAT
GTGGTTCTCAAGTGCGATGTGGGAAGCAATTTGCACAGCTCAGACGTGGT
GGTCTTGTGGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGG
TGCAGCCCAACTTCAAACTGGACGCCAACTACGACCTGACCATCCTGAAG
GCGAGTCCCCAGGTGGCTGGCAGCTATCTCTGCAAGGTTCTGCCCTCCGG
ATCCGTGGTCAACACGAAGGTGACCATCGCCGAGCATTCCCTGGACGCCA
TTGCCCCGGAGAGCTCCACATCCGCGGCGGGATCTGCGAGCAGTTTTCTG
GGATGCACTGTCCTGGCATCGACCGTGTTGCTCCTCCTGGGGATGGGCGC
ACATGCAAGCTTTCTAGACC

BO11180.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3624-PA 591 CG3624-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
babos-RB 1303 CG3624-RB 361..948 17..604 2940 100 Plus
babos-RA 1116 CG3624-RA 361..948 17..604 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22394231..22394553 604..282 1615 100 Minus
2R 25286936 2R 22394612..22394816 281..77 1025 100 Minus
2R 25286936 2R 22401639..22401699 77..17 305 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:38:43 has no hits.

BO11180.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:20 Download gff for BO11180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3624-PA 1..591 17..605 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:44 Download gff for BO11180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3624-PA 1..591 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:39 Download gff for BO11180.5prime
Subject Subject Range Query Range Percent Splice Strand
babos-RA 354..954 9..612 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:07 Download gff for BO11180.5prime
Subject Subject Range Query Range Percent Splice Strand
babos-RA 354..954 9..612 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:07 Download gff for BO11180.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22394225..22394553 282..612 98 <- Minus
2R 22394612..22394815 78..281 100 <- Minus
2R 22401639..22401706 9..77 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:39 Download gff for BO11180.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18281730..18282058 282..612 98 <- Minus
arm_2R 18282117..18282320 78..281 100 <- Minus
arm_2R 18289144..18289211 9..77 94   Minus

BO11180.complete Sequence

622 bp (622 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ632021

> BO11180.complete
GAAGTTATCAGTCGACATGATGTCCAGAACAGATCTTCTAATCGCCGGAC
TCCTACTGATCGTGGGCAGTGCCGCGGTGATCTCCTACCCACAATCCTCG
ATGGACGATGACCAAATGCAGGCCGATGATGACTTCGACTACGGAGGCGA
AGACCAGAGTGCGCCCAGTCCGCAGACGAAGTCCCCCAATCCTGTAGCCA
GCGAAAAGATCAACAAGACCCTCAGTGTGACGGGAATCCGTGGCGAGGAT
GTGGTTCTCAAGTGCGATGTGGGAAGCAATTTGCACAGCTCAGACGTGGT
GGTCTTGTGGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGG
TGCAGCCCAACTTCAAACTGGACGCCAACTACGACCTGACCATCCTGAAG
GCGAGTCCCCAGGTGGCTGGCAGCTATCTCTGCAAGGTTCTGCCCTCCGG
ATCCGTGGTCAACACGAAGGTGACCATCGCCGAGCATTCCCTGGACGCCA
TTGCCCCGGAGAGCTCCACATCCGCGGCGGGATCTGCGAGCAGTTTTCTG
GGATGCACTGTCCTGGCATCGACCGTGTTGCTCCTCCTGGGGATGGGCGC
ACATGCAAGCTTTCTAGACCAT

BO11180.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:09
Subject Length Description Subject Range Query Range Score Percent Strand
babos-RB 591 CG3624-PB 1..588 17..604 2940 100 Plus
babos-RA 591 CG3624-PA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
babos-RB 1303 CG3624-RB 361..948 17..604 2940 100 Plus
babos-RA 1116 CG3624-RA 361..948 17..604 2940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22394231..22394553 604..282 1615 100 Minus
2R 25286936 2R 22394612..22394816 281..77 1025 100 Minus
2R 25286936 2R 22401639..22401699 77..17 305 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:29:07 has no hits.

BO11180.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:26 Download gff for BO11180.complete
Subject Subject Range Query Range Percent Splice Strand
CG3624-RA 1..591 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:43 Download gff for BO11180.complete
Subject Subject Range Query Range Percent Splice Strand
CG3624-RA 351..951 9..612 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:03 Download gff for BO11180.complete
Subject Subject Range Query Range Percent Splice Strand
babos-RA 361..948 17..606 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:26 Download gff for BO11180.complete
Subject Subject Range Query Range Percent Splice Strand
CG3624-RA 351..951 9..612 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:29 Download gff for BO11180.complete
Subject Subject Range Query Range Percent Splice Strand
babos-RA 361..948 17..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:29 Download gff for BO11180.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22394229..22394553 282..606 99 <- Minus
2R 22394612..22394815 78..281 100 <- Minus
2R 22401639..22401699 17..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:03 Download gff for BO11180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18281734..18282058 282..606 99 <- Minus
arm_2R 18282117..18282320 78..281 100 <- Minus
arm_2R 18289144..18289204 17..77 100   Minus

BO11180.pep Sequence

Translation from 16 to 622

> BO11180.pep
MMSRTDLLIAGLLLIVGSAAVISYPQSSMDDDQMQADDDFDYGGEDQSAP
SPQTKSPNPVASEKINKTLSVTGIRGEDVVLKCDVGSNLHSSDVVVLWYF
GDNVISNGKNLVQPNFKLDANYDLTILKASPQVAGSYLCKVLPSGSVVNT
KVTIAEHSLDAIAPESSTSAAGSASSFLGCTVLASTVLLLLGMGAHASFL
DH

BO11180.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
babos-PB 196 CG3624-PB 1..196 1..196 986 100 Plus
babos-PA 196 CG3624-PA 1..196 1..196 986 100 Plus