Clone Sequence Records
BO11180.3prime Sequence
620 bp (619 high quality bases) assembled on 2006-04-19
> BO11180.3prime
ATGGTCTAGAAAGCTTGCATGTGCGCCCATCCCCAGGAGGAGCAACACGG
TCGATGCCAGGACAGTGCATCCCAGAAAACTGCTCGCAGATCCCGCCGCG
GATGTGGAGCTCTCCGGGGCAATGGCGTCCAGGGAATGCTCGGCGATGGT
CACCTTCGTGTTGACCACGGATCCGGAGGGCAGAACCTTGCAGAGATAGC
TGCCAGCCACCTGGGGACTCGCCTTCAGGATGGTCAGGTCGTAGTTGGCG
TCCAGTTTGAAGTTGGGCTGCACCAGGTTCTTGCCATTGGAAATGACATT
ATCGCCGAAGTACCACAAGACCACCACGTCTGAGCTGTGCAAATTGCTTC
CCACATCGCACTTGAGAACCACATCCTCGCCACGGATTCCCGTCACACTG
AGGGTCTTGTTGATCTTTTCGCTGGCTACAGGATTGGGGGACTTCGTCTG
CGGACTGGGCGCACTCTGGTCTTCGCCTCCGTAGTCGAAGTCATCATCGG
CCTGCATTTGGTCATCGTCCATCGAGGATTGTGGGTAGGAGATCACCGCG
GCACTGCCCACGATCAGTAGGAGTCCGGCGATTAGAAGATCTGTTCTGGA
CATCATGTCGACTGATAACT
BO11180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3624-PA | 591 | CG3624-RA | 1..588 | 606..19 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
babos-RB | 1303 | CG3624-RB | 361..948 | 606..19 | 2940 | 100 | Minus |
babos-RA | 1116 | CG3624-RA | 361..948 | 606..19 | 2940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22394231..22394553 | 19..341 | 1615 | 100 | Plus |
2R | 25286936 | 2R | 22394612..22394816 | 342..546 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 22401639..22401699 | 546..606 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:40:40 has no hits.
BO11180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:19 Download gff for
BO11180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-PA | 1..591 | 18..606 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:42 Download gff for
BO11180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-PA | 1..591 | 18..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:58:32 Download gff for
BO11180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 354..954 | 11..614 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:35 Download gff for
BO11180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 354..954 | 11..614 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:36:35 Download gff for
BO11180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22394612..22394815 | 342..545 | 100 | <- | Plus |
2R | 22401639..22401706 | 546..614 | 94 | | Plus |
2R | 22394225..22394553 | 11..341 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:58:32 Download gff for
BO11180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18281730..18282058 | 11..341 | 98 | <- | Plus |
arm_2R | 18282117..18282320 | 342..545 | 100 | <- | Plus |
arm_2R | 18289144..18289211 | 546..614 | 94 | | Plus |
BO11180.5prime Sequence
620 bp (619 high quality bases) assembled on 2006-04-19
> BO11180.5prime
GAAGTTATCAGTCGACATGATGTCCAGAACAGATCTTCTAATCGCCGGAC
TCCTACTGATCGTGGGCAGTGCCGCGGTGATCTCCTACCCACAATCCTCG
ATGGACGATGACCAAATGCAGGCCGATGATGACTTCGACTACGGAGGCGA
AGACCAGAGTGCGCCCAGTCCGCAGACGAAGTCCCCCAATCCTGTAGCCA
GCGAAAAGATCAACAAGACCCTCAGTGTGACGGGAATCCGTGGCGAGGAT
GTGGTTCTCAAGTGCGATGTGGGAAGCAATTTGCACAGCTCAGACGTGGT
GGTCTTGTGGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGG
TGCAGCCCAACTTCAAACTGGACGCCAACTACGACCTGACCATCCTGAAG
GCGAGTCCCCAGGTGGCTGGCAGCTATCTCTGCAAGGTTCTGCCCTCCGG
ATCCGTGGTCAACACGAAGGTGACCATCGCCGAGCATTCCCTGGACGCCA
TTGCCCCGGAGAGCTCCACATCCGCGGCGGGATCTGCGAGCAGTTTTCTG
GGATGCACTGTCCTGGCATCGACCGTGTTGCTCCTCCTGGGGATGGGCGC
ACATGCAAGCTTTCTAGACC
BO11180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3624-PA | 591 | CG3624-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
babos-RB | 1303 | CG3624-RB | 361..948 | 17..604 | 2940 | 100 | Plus |
babos-RA | 1116 | CG3624-RA | 361..948 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22394231..22394553 | 604..282 | 1615 | 100 | Minus |
2R | 25286936 | 2R | 22394612..22394816 | 281..77 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 22401639..22401699 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:38:43 has no hits.
BO11180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:20 Download gff for
BO11180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-PA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:44 Download gff for
BO11180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-PA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:39 Download gff for
BO11180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 354..954 | 9..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:07 Download gff for
BO11180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 354..954 | 9..612 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:07 Download gff for
BO11180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22394225..22394553 | 282..612 | 98 | <- | Minus |
2R | 22394612..22394815 | 78..281 | 100 | <- | Minus |
2R | 22401639..22401706 | 9..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:39 Download gff for
BO11180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18281730..18282058 | 282..612 | 98 | <- | Minus |
arm_2R | 18282117..18282320 | 78..281 | 100 | <- | Minus |
arm_2R | 18289144..18289211 | 9..77 | 94 | | Minus |
BO11180.complete Sequence
622 bp (622 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ632021
> BO11180.complete
GAAGTTATCAGTCGACATGATGTCCAGAACAGATCTTCTAATCGCCGGAC
TCCTACTGATCGTGGGCAGTGCCGCGGTGATCTCCTACCCACAATCCTCG
ATGGACGATGACCAAATGCAGGCCGATGATGACTTCGACTACGGAGGCGA
AGACCAGAGTGCGCCCAGTCCGCAGACGAAGTCCCCCAATCCTGTAGCCA
GCGAAAAGATCAACAAGACCCTCAGTGTGACGGGAATCCGTGGCGAGGAT
GTGGTTCTCAAGTGCGATGTGGGAAGCAATTTGCACAGCTCAGACGTGGT
GGTCTTGTGGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGG
TGCAGCCCAACTTCAAACTGGACGCCAACTACGACCTGACCATCCTGAAG
GCGAGTCCCCAGGTGGCTGGCAGCTATCTCTGCAAGGTTCTGCCCTCCGG
ATCCGTGGTCAACACGAAGGTGACCATCGCCGAGCATTCCCTGGACGCCA
TTGCCCCGGAGAGCTCCACATCCGCGGCGGGATCTGCGAGCAGTTTTCTG
GGATGCACTGTCCTGGCATCGACCGTGTTGCTCCTCCTGGGGATGGGCGC
ACATGCAAGCTTTCTAGACCAT
BO11180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
babos-RB | 591 | CG3624-PB | 1..588 | 17..604 | 2940 | 100 | Plus |
babos-RA | 591 | CG3624-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
babos-RB | 1303 | CG3624-RB | 361..948 | 17..604 | 2940 | 100 | Plus |
babos-RA | 1116 | CG3624-RA | 361..948 | 17..604 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22394231..22394553 | 604..282 | 1615 | 100 | Minus |
2R | 25286936 | 2R | 22394612..22394816 | 281..77 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 22401639..22401699 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:29:07 has no hits.
BO11180.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:26 Download gff for
BO11180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-RA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:43 Download gff for
BO11180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-RA | 351..951 | 9..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:03 Download gff for
BO11180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 361..948 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:26 Download gff for
BO11180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-RA | 351..951 | 9..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:29 Download gff for
BO11180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 361..948 | 17..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:29 Download gff for
BO11180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22394229..22394553 | 282..606 | 99 | <- | Minus |
2R | 22394612..22394815 | 78..281 | 100 | <- | Minus |
2R | 22401639..22401699 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:03 Download gff for
BO11180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18281734..18282058 | 282..606 | 99 | <- | Minus |
arm_2R | 18282117..18282320 | 78..281 | 100 | <- | Minus |
arm_2R | 18289144..18289204 | 17..77 | 100 | | Minus |
BO11180.pep Sequence
Translation from 16 to 622
> BO11180.pep
MMSRTDLLIAGLLLIVGSAAVISYPQSSMDDDQMQADDDFDYGGEDQSAP
SPQTKSPNPVASEKINKTLSVTGIRGEDVVLKCDVGSNLHSSDVVVLWYF
GDNVISNGKNLVQPNFKLDANYDLTILKASPQVAGSYLCKVLPSGSVVNT
KVTIAEHSLDAIAPESSTSAAGSASSFLGCTVLASTVLLLLGMGAHASFL
DH
BO11180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
babos-PB | 196 | CG3624-PB | 1..196 | 1..196 | 986 | 100 | Plus |
babos-PA | 196 | CG3624-PA | 1..196 | 1..196 | 986 | 100 | Plus |