Clone BO11182 Report

Search the DGRC for BO11182

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:111
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptMdh-RA
Protein status:BO11182.pep: validated full length
Sequenced Size:1885

Clone Sequence Records

BO11182.3prime Sequence

860 bp (845 high quality bases) assembled on 2006-04-19

> BO11182.3prime
ATGGTCTAGAAAGCTTGCTTTGATGGCGGCAATGAGCGGGCTTTCTTCGC
GAGTCTTAATGTAGGGCATCCGCGGCCAAACCCAGGAAGCGGGCATCGAG
CTCTCGTAGTTGAAGTTGTACAGCTGATTCTCCAGCCACTTGCGCTTGTC
CTGTGGCTCAGGGTAGGTAGATGCCAAGCCTCTATCGTAGGCACATTTGG
TCACGCCAACGGCAATGTTCATGGACACGTTGCGGATGCTCGACAGCGGA
GGATACAGCGATCCGCGCTCAATATCGCTGGGCTCCACGAAGTTGGCCAA
CTCCTGGGCGGCGATGAGGAACATTTCGTCGGGTATGTGGTGAGTACCCG
TGCAGATCACGCCCAAGCCAACGCCTGGGAAGATGTAGGCATTGTTGCCC
TGGCCCGGGTAGAAGGTCTTGTCACCGATCTGGACCGGTGGGAAGGGAGA
GCCCGACGAGAAGATCACGCGAGCATCCGTGTGCTTGTAAGCATCTTCGG
CAGTGCATTCTGCCTTGCTGGTGGGATTGGACAAGGCGAACACCACGGGC
CTCTCATTGTTATCCGCCATGGTGCGCAGGATTTCCGGTGTGAAAATGCC
GGCAGCAGCCGAGGCACCAATAAGCACACTGGGTTTGATGGTGGAGACAA
TCTCGGCGAGATCTGACATCGGATTGATGTCCTTGGCGTAGTGGATTTTG
TGGCCATCCAAGTTGCCCACCTTGCGGCTCTTGGTCAGCAGACCATCGAT
ATCGACCATGTAAATTCTGTTGTAGGCCTCCTCGATGGGCACACCATCCT
GCACCATGGCCTTGACCGTGAGATCGGCGATGCCGATGGCGGCCTCACCG
GCTCCTGCAA

BO11182.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5889-PA 1854 Mdh-RA 1010..1851 860..19 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
Men-b-RA 3311 CG5889-RA 1238..2079 860..19 4210 100 Minus
Men-b-RC 2543 CG5889-RC 1238..2048 860..50 4055 100 Minus
Men-b-RB 2239 CG5889-RB 1238..2048 860..50 4055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27155778..27156073 474..179 1480 100 Minus
3R 32079331 3R 27155273..27155507 860..626 1175 100 Minus
3R 32079331 3R 27155566..27155719 627..474 770 100 Minus
3R 32079331 3R 27156139..27156270 181..50 660 100 Minus
Blast to na_te.dros performed on 2015-02-12 14:03:14 has no hits.

BO11182.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:23 Download gff for BO11182.3prime
Subject Subject Range Query Range Percent Splice Strand
Mdh-PA 1012..1854 15..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:48 Download gff for BO11182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5889-PA 1012..1854 15..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:39:35 Download gff for BO11182.3prime
Subject Subject Range Query Range Percent Splice Strand
Men-b-RA 1240..2082 15..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:02 Download gff for BO11182.3prime
Subject Subject Range Query Range Percent Splice Strand
Men-b-RA 1240..2082 15..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:02 Download gff for BO11182.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27155275..27155505 628..858 100 -> Minus
3R 27155566..27155718 475..627 100 -> Minus
3R 27155778..27156072 180..474 100 -> Minus
3R 27156141..27156269 51..179 100 -> Minus
3R 27156340..27156374 15..50 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:39:35 Download gff for BO11182.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22980997..22981227 628..858 100 -> Minus
arm_3R 22981288..22981440 475..627 100 -> Minus
arm_3R 22981500..22981794 180..474 100 -> Minus
arm_3R 22981863..22981991 51..179 100 -> Minus
arm_3R 22982062..22982096 15..50 94   Minus

BO11182.5prime Sequence

867 bp (823 high quality bases) assembled on 2006-04-19

> BO11182.5prime
GAAGTTATCAGTCGACATGTTCTCACGACCCAGCTTATGTGGAACTGTGG
GCAAATTGTGTCGATGCGGCACTTCAGCAACAGGAAAGACTGCTGTGGCA
GCAGCAACAGTTCCCACCGCTCGACACTATCATGAGGTGGTGGGCGATAT
CATCTGCCCGTCTCAGGTGCGCGGCATAGATCACATCCGTGATCCGCGAC
TCAACAAGGGCCTTGCCTTTACACTGGAGGAGCGCCAGACTCTGGGCATC
CATGGGCTGCAGCCAGCGCGCTTCAAGACGCAAGAGGAGCAGCTGCAGCT
ATGCAAGATCGCCGTAAACCGCTACACGGAGCCGCTGAACAAGTATCTCT
ATCTGAGCGATCTGTACGATCGCAATGAGCGTCTGTTCTTCCGCTTCCTA
TCGGAGAACATCGAGGATCTGATGCCCATTGTGTACACGCCGACGGTGGG
CTTGGCCTGCCAGCGCTTTGGCCTGATCTACCGACGTCCTCATGGTCTGT
TCATCACCTACAACGATCGAGGACACATCTTTGATGTGATGAAGAACTGG
CCGGAGCCGAATGTGCGTGCCATCTGTGTGACGGATGGTGAGCGCATCCT
GGGACTGGGAGATTTGGGCGCCTGCGGCATGGGCATTCCCGTGGGCAAGC
TGGCCTTGTACACGGCTCTGGCCGGAATCAAGCCCCATCAGTGCCTGCCC
ATTGTGGTGGATGTGGGCACCAACAACATCGATCTGCTGGAGGATCCCCT
GTACGTGGGTCTGCGTCAGAAGCGAGTGGTTGGTCGGGAGTACGACGAGT
TCATTGACGAGTTTATGGAGGCCGTGGTGCAGCGCTATGGCCAGAACACT
CTGATCCAGTTTGAGGA

BO11182.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5889-PA 1854 Mdh-RA 1..851 17..867 4255 100 Plus
CG10120-PA 2280 Men-RA 1009..1115 542..648 185 86.9 Plus
CG10120-PB 2292 Men-RB 1021..1127 542..648 185 86.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
Men-b-RC 2543 CG5889-RC 229..1079 17..867 4255 100 Plus
Men-b-RB 2239 CG5889-RB 229..1079 17..867 4255 100 Plus
Men-b-RA 3311 CG5889-RA 229..1079 17..867 4255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27154454..27155114 207..867 3305 100 Plus
3R 32079331 3R 27154213..27154391 31..209 895 100 Plus
3R 32079331 3R 12714576..12714921 765..420 515 76.6 Minus
Blast to na_te.dros performed on 2015-02-13 08:44:04 has no hits.

BO11182.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:24 Download gff for BO11182.5prime
Subject Subject Range Query Range Percent Splice Strand
Mdh-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:50 Download gff for BO11182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5889-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:06 Download gff for BO11182.5prime
Subject Subject Range Query Range Percent Splice Strand
Men-b-RA 222..1078 9..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:15 Download gff for BO11182.5prime
Subject Subject Range Query Range Percent Splice Strand
Men-b-RA 222..1078 9..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:15 Download gff for BO11182.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27154216..27154390 34..208 100 -> Plus
3R 27154456..27155113 209..866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:06 Download gff for BO11182.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22979938..22980112 34..208 100 -> Plus
arm_3R 22980178..22980835 209..866 100   Plus

BO11182.complete Sequence

1885 bp (1885 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ632022

> BO11182.complete
GAAGTTATCAGTCGACATGTTCTCACGACCCAGCTTATGTGGAACTGTGG
GCAAATTGTGTCGATGCGGCACTTCAGCAACAGGAAAGACTGCTGTGGCA
GCAGCAACAGTTCCCACCGCTCGACACTATCATGAGGTGGTGGGCGATAT
CATCTGCCCGTCTCAGGTGCGCGGCATAGATCACATCCGTGATCCGCGAC
TCAACAAGGGCCTTGCCTTTACACTGGAGGAGCGCCAGACTCTGGGCATC
CATGGGCTGCAGCCAGCGCGCTTCAAGACGCAAGAGGAGCAGCTGCAGCT
ATGCAAGATCGCCGTAAACCGCTACACGGAGCCGCTGAACAAGTATCTCT
ATCTGAGCGATCTGTACGATCGCAATGAGCGTCTGTTCTTCCGCTTCCTA
TCGGAGAACATCGAGGATCTGATGCCCATTGTGTACACGCCGACGGTGGG
CTTGGCCTGCCAGCGCTTTGGCCTGATCTACCGACGTCCTCATGGTCTGT
TCATCACCTACAACGATCGAGGACACATCTTTGATGTGATGAAGAACTGG
CCGGAGCCGAATGTGCGTGCCATCTGTGTGACGGATGGTGAGCGCATCCT
GGGACTGGGAGATTTGGGCGCCTGCGGCATGGGCATTCCCGTGGGCAAGC
TGGCCTTGTACACGGCTCTGGCCGGAATCAAGCCCCATCAGTGCCTGCCC
ATTGTGGTGGATGTGGGCACCAACAACATCGATCTGCTGGAGGATCCCCT
GTACGTGGGTCTGCGTCAGAAGCGAGTGGTTGGTCGGGAGTACGACGAGT
TCATTGACGAGTTTATGGAGGCCGTGGTGCAGCGCTATGGCCAGAACACT
CTGATCCAGTTTGAGGACTTTGGCAACCACAATGCATTTAGGTTCCTGGA
CAAATACCGCAACACCTATTGCACTTTCAACGACGACATCCAGGGAACCG
CCTCCGTGGCCGTTGCTGGGCTCTATGCCTCCAAGCGTATTACGGGTAAG
TCCTTCAAGGACTACACCTTCCTGTTTGCAGGAGCCGGTGAGGCCGCCAT
CGGCATCGCCGATCTCACGGTCAAGGCCATGGTGCAGGATGGTGTGCCCA
TCGAGGAGGCCTACAACAGAATTTACATGGTCGATATCGATGGTCTGCTG
ACCAAGAGCCGCAAGGTGGGCAACTTGGATGGCCACAAAATCCACTACGC
CAAGGACATCAATCCGATGTCAGATCTCGCCGAGATTGTCTCCACCATCA
AACCCAGTGTGCTTATTGGTGCCTCGGCTGCTGCCGGCATTTTCACACCG
GAAATCCTGCGCACCATGGCGGATAACAATGAGAGGCCCGTGGTGTTCGC
CTTGTCCAATCCCACCAGCAAGGCAGAATGCACTGCCGAAGATGCTTACA
AGCACACGGATGCTCGCGTGATCTTCTCGTCGGGCTCTCCCTTCCCACCG
GTCCAGATCGGTGACAAGACCTTCTACCCGGGCCAGGGCAACAATGCCTA
CATCTTCCCAGGCGTTGGCTTGGGCGTGATCTGCACGGGTACTCACCACA
TACCCGACGAAATGTTCCTCATCGCCGCCCAGGAGTTGGCCAACTTCGTG
GAGCCCAGCGATATTGAGCGCGGATCGCTGTATCCTCCGCTGTCGAGCAT
CCGCAACGTGTCCATGAACATTGCCGTTGGCGTGACCAAATGTGCCTACG
ATAGAGGCTTGGCATCTACCTACCCTGAGCCACAGGACAAGCGCAAGTGG
CTGGAGAATCAGCTGTACAACTTCAACTACGAGAGCTCGATGCCCGCTTC
CTGGGTTTGGCCGCGGATGCCCTACATTAAGACTCGCGAAGAAAGCCCGC
TCATTGCCGCCATCAAAGCAAGCTTTCTAGACCAT

BO11182.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Men-b-RA 1854 CG5889-PA 1..1851 17..1867 9255 100 Plus
Men-b-RC 1875 CG5889-PC 1..1820 17..1836 9100 100 Plus
Men-b-RB 1866 CG5889-PB 1..1820 17..1836 9100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
Men-b-RA 3311 CG5889-RA 229..2079 17..1867 9255 100 Plus
Men-b-RC 2543 CG5889-RC 229..2048 17..1836 9100 100 Plus
Men-b-RB 2239 CG5889-RB 229..2048 17..1836 9100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27154454..27155507 207..1260 5270 100 Plus
3R 32079331 3R 27155778..27156073 1412..1707 1480 100 Plus
3R 32079331 3R 27154213..27154391 31..209 895 100 Plus
3R 32079331 3R 27155566..27155719 1259..1412 770 100 Plus
3R 32079331 3R 27156139..27156270 1705..1836 660 100 Plus
3R 32079331 3R 12714372..12714921 969..420 650 74.5 Minus
Blast to na_te.dros performed on 2014-11-27 15:41:01 has no hits.

BO11182.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:00 Download gff for BO11182.complete
Subject Subject Range Query Range Percent Splice Strand
Mdh-RA 1..1854 17..1871 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:31 Download gff for BO11182.complete
Subject Subject Range Query Range Percent Splice Strand
Mdh-RA 243..2103 9..1871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:37 Download gff for BO11182.complete
Subject Subject Range Query Range Percent Splice Strand
Men-b-RA 234..2079 22..1869 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:00 Download gff for BO11182.complete
Subject Subject Range Query Range Percent Splice Strand
Mdh-RA 243..2103 9..1871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:46 Download gff for BO11182.complete
Subject Subject Range Query Range Percent Splice Strand
Men-b-RA 234..2079 22..1869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:46 Download gff for BO11182.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27154213..27154390 31..208 100 -> Plus
3R 27154456..27155505 209..1258 100 -> Plus
3R 27155566..27155718 1259..1411 100 -> Plus
3R 27155778..27156072 1412..1706 100 -> Plus
3R 27156141..27156269 1707..1835 100 -> Plus
3R 27156340..27156371 1836..1869 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:37 Download gff for BO11182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22979935..22980112 31..208 100 -> Plus
arm_3R 22980178..22981227 209..1258 100 -> Plus
arm_3R 22981288..22981440 1259..1411 100 -> Plus
arm_3R 22981500..22981794 1412..1706 100 -> Plus
arm_3R 22981863..22981991 1707..1835 100 -> Plus
arm_3R 22982062..22982093 1836..1869 94   Plus

BO11182.pep Sequence

Translation from 16 to 1885

> BO11182.pep
MFSRPSLCGTVGKLCRCGTSATGKTAVAAATVPTARHYHEVVGDIICPSQ
VRGIDHIRDPRLNKGLAFTLEERQTLGIHGLQPARFKTQEEQLQLCKIAV
NRYTEPLNKYLYLSDLYDRNERLFFRFLSENIEDLMPIVYTPTVGLACQR
FGLIYRRPHGLFITYNDRGHIFDVMKNWPEPNVRAICVTDGERILGLGDL
GACGMGIPVGKLALYTALAGIKPHQCLPIVVDVGTNNIDLLEDPLYVGLR
QKRVVGREYDEFIDEFMEAVVQRYGQNTLIQFEDFGNHNAFRFLDKYRNT
YCTFNDDIQGTASVAVAGLYASKRITGKSFKDYTFLFAGAGEAAIGIADL
TVKAMVQDGVPIEEAYNRIYMVDIDGLLTKSRKVGNLDGHKIHYAKDINP
MSDLAEIVSTIKPSVLIGASAAAGIFTPEILRTMADNNERPVVFALSNPT
SKAECTAEDAYKHTDARVIFSSGSPFPPVQIGDKTFYPGQGNNAYIFPGV
GLGVICTGTHHIPDEMFLIAAQELANFVEPSDIERGSLYPPLSSIRNVSM
NIAVGVTKCAYDRGLASTYPEPQDKRKWLENQLYNFNYESSMPASWVWPR
MPYIKTREESPLIAAIKASFLDH

BO11182.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Men-b-PA 617 CG5889-PA 1..617 1..617 3253 100 Plus
Men-b-PC 624 CG5889-PC 1..611 1..611 3211 99.5 Plus
Men-b-PB 621 CG5889-PB 1..611 1..611 3211 99.5 Plus
Men-PC 578 CG10120-PC 25..576 39..596 1693 58.8 Plus
Men-PA 759 CG10120-PA 206..757 39..596 1693 58.8 Plus