Clone Sequence Records
BO11182.3prime Sequence
860 bp (845 high quality bases) assembled on 2006-04-19
> BO11182.3prime
ATGGTCTAGAAAGCTTGCTTTGATGGCGGCAATGAGCGGGCTTTCTTCGC
GAGTCTTAATGTAGGGCATCCGCGGCCAAACCCAGGAAGCGGGCATCGAG
CTCTCGTAGTTGAAGTTGTACAGCTGATTCTCCAGCCACTTGCGCTTGTC
CTGTGGCTCAGGGTAGGTAGATGCCAAGCCTCTATCGTAGGCACATTTGG
TCACGCCAACGGCAATGTTCATGGACACGTTGCGGATGCTCGACAGCGGA
GGATACAGCGATCCGCGCTCAATATCGCTGGGCTCCACGAAGTTGGCCAA
CTCCTGGGCGGCGATGAGGAACATTTCGTCGGGTATGTGGTGAGTACCCG
TGCAGATCACGCCCAAGCCAACGCCTGGGAAGATGTAGGCATTGTTGCCC
TGGCCCGGGTAGAAGGTCTTGTCACCGATCTGGACCGGTGGGAAGGGAGA
GCCCGACGAGAAGATCACGCGAGCATCCGTGTGCTTGTAAGCATCTTCGG
CAGTGCATTCTGCCTTGCTGGTGGGATTGGACAAGGCGAACACCACGGGC
CTCTCATTGTTATCCGCCATGGTGCGCAGGATTTCCGGTGTGAAAATGCC
GGCAGCAGCCGAGGCACCAATAAGCACACTGGGTTTGATGGTGGAGACAA
TCTCGGCGAGATCTGACATCGGATTGATGTCCTTGGCGTAGTGGATTTTG
TGGCCATCCAAGTTGCCCACCTTGCGGCTCTTGGTCAGCAGACCATCGAT
ATCGACCATGTAAATTCTGTTGTAGGCCTCCTCGATGGGCACACCATCCT
GCACCATGGCCTTGACCGTGAGATCGGCGATGCCGATGGCGGCCTCACCG
GCTCCTGCAA
BO11182.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5889-PA | 1854 | Mdh-RA | 1010..1851 | 860..19 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Men-b-RA | 3311 | CG5889-RA | 1238..2079 | 860..19 | 4210 | 100 | Minus |
Men-b-RC | 2543 | CG5889-RC | 1238..2048 | 860..50 | 4055 | 100 | Minus |
Men-b-RB | 2239 | CG5889-RB | 1238..2048 | 860..50 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27155778..27156073 | 474..179 | 1480 | 100 | Minus |
3R | 32079331 | 3R | 27155273..27155507 | 860..626 | 1175 | 100 | Minus |
3R | 32079331 | 3R | 27155566..27155719 | 627..474 | 770 | 100 | Minus |
3R | 32079331 | 3R | 27156139..27156270 | 181..50 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 14:03:14 has no hits.
BO11182.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:23 Download gff for
BO11182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh-PA | 1012..1854 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:48 Download gff for
BO11182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5889-PA | 1012..1854 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:39:35 Download gff for
BO11182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Men-b-RA | 1240..2082 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:02 Download gff for
BO11182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Men-b-RA | 1240..2082 | 15..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:02 Download gff for
BO11182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27155275..27155505 | 628..858 | 100 | -> | Minus |
3R | 27155566..27155718 | 475..627 | 100 | -> | Minus |
3R | 27155778..27156072 | 180..474 | 100 | -> | Minus |
3R | 27156141..27156269 | 51..179 | 100 | -> | Minus |
3R | 27156340..27156374 | 15..50 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:39:35 Download gff for
BO11182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22980997..22981227 | 628..858 | 100 | -> | Minus |
arm_3R | 22981288..22981440 | 475..627 | 100 | -> | Minus |
arm_3R | 22981500..22981794 | 180..474 | 100 | -> | Minus |
arm_3R | 22981863..22981991 | 51..179 | 100 | -> | Minus |
arm_3R | 22982062..22982096 | 15..50 | 94 | | Minus |
BO11182.5prime Sequence
867 bp (823 high quality bases) assembled on 2006-04-19
> BO11182.5prime
GAAGTTATCAGTCGACATGTTCTCACGACCCAGCTTATGTGGAACTGTGG
GCAAATTGTGTCGATGCGGCACTTCAGCAACAGGAAAGACTGCTGTGGCA
GCAGCAACAGTTCCCACCGCTCGACACTATCATGAGGTGGTGGGCGATAT
CATCTGCCCGTCTCAGGTGCGCGGCATAGATCACATCCGTGATCCGCGAC
TCAACAAGGGCCTTGCCTTTACACTGGAGGAGCGCCAGACTCTGGGCATC
CATGGGCTGCAGCCAGCGCGCTTCAAGACGCAAGAGGAGCAGCTGCAGCT
ATGCAAGATCGCCGTAAACCGCTACACGGAGCCGCTGAACAAGTATCTCT
ATCTGAGCGATCTGTACGATCGCAATGAGCGTCTGTTCTTCCGCTTCCTA
TCGGAGAACATCGAGGATCTGATGCCCATTGTGTACACGCCGACGGTGGG
CTTGGCCTGCCAGCGCTTTGGCCTGATCTACCGACGTCCTCATGGTCTGT
TCATCACCTACAACGATCGAGGACACATCTTTGATGTGATGAAGAACTGG
CCGGAGCCGAATGTGCGTGCCATCTGTGTGACGGATGGTGAGCGCATCCT
GGGACTGGGAGATTTGGGCGCCTGCGGCATGGGCATTCCCGTGGGCAAGC
TGGCCTTGTACACGGCTCTGGCCGGAATCAAGCCCCATCAGTGCCTGCCC
ATTGTGGTGGATGTGGGCACCAACAACATCGATCTGCTGGAGGATCCCCT
GTACGTGGGTCTGCGTCAGAAGCGAGTGGTTGGTCGGGAGTACGACGAGT
TCATTGACGAGTTTATGGAGGCCGTGGTGCAGCGCTATGGCCAGAACACT
CTGATCCAGTTTGAGGA
BO11182.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5889-PA | 1854 | Mdh-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
CG10120-PA | 2280 | Men-RA | 1009..1115 | 542..648 | 185 | 86.9 | Plus |
CG10120-PB | 2292 | Men-RB | 1021..1127 | 542..648 | 185 | 86.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Men-b-RC | 2543 | CG5889-RC | 229..1079 | 17..867 | 4255 | 100 | Plus |
Men-b-RB | 2239 | CG5889-RB | 229..1079 | 17..867 | 4255 | 100 | Plus |
Men-b-RA | 3311 | CG5889-RA | 229..1079 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27154454..27155114 | 207..867 | 3305 | 100 | Plus |
3R | 32079331 | 3R | 27154213..27154391 | 31..209 | 895 | 100 | Plus |
3R | 32079331 | 3R | 12714576..12714921 | 765..420 | 515 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:44:04 has no hits.
BO11182.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:24 Download gff for
BO11182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:50 Download gff for
BO11182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5889-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:06 Download gff for
BO11182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Men-b-RA | 222..1078 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:15 Download gff for
BO11182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Men-b-RA | 222..1078 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:15 Download gff for
BO11182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27154216..27154390 | 34..208 | 100 | -> | Plus |
3R | 27154456..27155113 | 209..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:06 Download gff for
BO11182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22979938..22980112 | 34..208 | 100 | -> | Plus |
arm_3R | 22980178..22980835 | 209..866 | 100 | | Plus |
BO11182.complete Sequence
1885 bp (1885 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ632022
> BO11182.complete
GAAGTTATCAGTCGACATGTTCTCACGACCCAGCTTATGTGGAACTGTGG
GCAAATTGTGTCGATGCGGCACTTCAGCAACAGGAAAGACTGCTGTGGCA
GCAGCAACAGTTCCCACCGCTCGACACTATCATGAGGTGGTGGGCGATAT
CATCTGCCCGTCTCAGGTGCGCGGCATAGATCACATCCGTGATCCGCGAC
TCAACAAGGGCCTTGCCTTTACACTGGAGGAGCGCCAGACTCTGGGCATC
CATGGGCTGCAGCCAGCGCGCTTCAAGACGCAAGAGGAGCAGCTGCAGCT
ATGCAAGATCGCCGTAAACCGCTACACGGAGCCGCTGAACAAGTATCTCT
ATCTGAGCGATCTGTACGATCGCAATGAGCGTCTGTTCTTCCGCTTCCTA
TCGGAGAACATCGAGGATCTGATGCCCATTGTGTACACGCCGACGGTGGG
CTTGGCCTGCCAGCGCTTTGGCCTGATCTACCGACGTCCTCATGGTCTGT
TCATCACCTACAACGATCGAGGACACATCTTTGATGTGATGAAGAACTGG
CCGGAGCCGAATGTGCGTGCCATCTGTGTGACGGATGGTGAGCGCATCCT
GGGACTGGGAGATTTGGGCGCCTGCGGCATGGGCATTCCCGTGGGCAAGC
TGGCCTTGTACACGGCTCTGGCCGGAATCAAGCCCCATCAGTGCCTGCCC
ATTGTGGTGGATGTGGGCACCAACAACATCGATCTGCTGGAGGATCCCCT
GTACGTGGGTCTGCGTCAGAAGCGAGTGGTTGGTCGGGAGTACGACGAGT
TCATTGACGAGTTTATGGAGGCCGTGGTGCAGCGCTATGGCCAGAACACT
CTGATCCAGTTTGAGGACTTTGGCAACCACAATGCATTTAGGTTCCTGGA
CAAATACCGCAACACCTATTGCACTTTCAACGACGACATCCAGGGAACCG
CCTCCGTGGCCGTTGCTGGGCTCTATGCCTCCAAGCGTATTACGGGTAAG
TCCTTCAAGGACTACACCTTCCTGTTTGCAGGAGCCGGTGAGGCCGCCAT
CGGCATCGCCGATCTCACGGTCAAGGCCATGGTGCAGGATGGTGTGCCCA
TCGAGGAGGCCTACAACAGAATTTACATGGTCGATATCGATGGTCTGCTG
ACCAAGAGCCGCAAGGTGGGCAACTTGGATGGCCACAAAATCCACTACGC
CAAGGACATCAATCCGATGTCAGATCTCGCCGAGATTGTCTCCACCATCA
AACCCAGTGTGCTTATTGGTGCCTCGGCTGCTGCCGGCATTTTCACACCG
GAAATCCTGCGCACCATGGCGGATAACAATGAGAGGCCCGTGGTGTTCGC
CTTGTCCAATCCCACCAGCAAGGCAGAATGCACTGCCGAAGATGCTTACA
AGCACACGGATGCTCGCGTGATCTTCTCGTCGGGCTCTCCCTTCCCACCG
GTCCAGATCGGTGACAAGACCTTCTACCCGGGCCAGGGCAACAATGCCTA
CATCTTCCCAGGCGTTGGCTTGGGCGTGATCTGCACGGGTACTCACCACA
TACCCGACGAAATGTTCCTCATCGCCGCCCAGGAGTTGGCCAACTTCGTG
GAGCCCAGCGATATTGAGCGCGGATCGCTGTATCCTCCGCTGTCGAGCAT
CCGCAACGTGTCCATGAACATTGCCGTTGGCGTGACCAAATGTGCCTACG
ATAGAGGCTTGGCATCTACCTACCCTGAGCCACAGGACAAGCGCAAGTGG
CTGGAGAATCAGCTGTACAACTTCAACTACGAGAGCTCGATGCCCGCTTC
CTGGGTTTGGCCGCGGATGCCCTACATTAAGACTCGCGAAGAAAGCCCGC
TCATTGCCGCCATCAAAGCAAGCTTTCTAGACCAT
BO11182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Men-b-RA | 1854 | CG5889-PA | 1..1851 | 17..1867 | 9255 | 100 | Plus |
Men-b-RC | 1875 | CG5889-PC | 1..1820 | 17..1836 | 9100 | 100 | Plus |
Men-b-RB | 1866 | CG5889-PB | 1..1820 | 17..1836 | 9100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Men-b-RA | 3311 | CG5889-RA | 229..2079 | 17..1867 | 9255 | 100 | Plus |
Men-b-RC | 2543 | CG5889-RC | 229..2048 | 17..1836 | 9100 | 100 | Plus |
Men-b-RB | 2239 | CG5889-RB | 229..2048 | 17..1836 | 9100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27154454..27155507 | 207..1260 | 5270 | 100 | Plus |
3R | 32079331 | 3R | 27155778..27156073 | 1412..1707 | 1480 | 100 | Plus |
3R | 32079331 | 3R | 27154213..27154391 | 31..209 | 895 | 100 | Plus |
3R | 32079331 | 3R | 27155566..27155719 | 1259..1412 | 770 | 100 | Plus |
3R | 32079331 | 3R | 27156139..27156270 | 1705..1836 | 660 | 100 | Plus |
3R | 32079331 | 3R | 12714372..12714921 | 969..420 | 650 | 74.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:41:01 has no hits.
BO11182.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:00 Download gff for
BO11182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh-RA | 1..1854 | 17..1871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:31 Download gff for
BO11182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh-RA | 243..2103 | 9..1871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:37 Download gff for
BO11182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Men-b-RA | 234..2079 | 22..1869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:00 Download gff for
BO11182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh-RA | 243..2103 | 9..1871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:46 Download gff for
BO11182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Men-b-RA | 234..2079 | 22..1869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:46 Download gff for
BO11182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27154213..27154390 | 31..208 | 100 | -> | Plus |
3R | 27154456..27155505 | 209..1258 | 100 | -> | Plus |
3R | 27155566..27155718 | 1259..1411 | 100 | -> | Plus |
3R | 27155778..27156072 | 1412..1706 | 100 | -> | Plus |
3R | 27156141..27156269 | 1707..1835 | 100 | -> | Plus |
3R | 27156340..27156371 | 1836..1869 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:37 Download gff for
BO11182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22979935..22980112 | 31..208 | 100 | -> | Plus |
arm_3R | 22980178..22981227 | 209..1258 | 100 | -> | Plus |
arm_3R | 22981288..22981440 | 1259..1411 | 100 | -> | Plus |
arm_3R | 22981500..22981794 | 1412..1706 | 100 | -> | Plus |
arm_3R | 22981863..22981991 | 1707..1835 | 100 | -> | Plus |
arm_3R | 22982062..22982093 | 1836..1869 | 94 | | Plus |
BO11182.pep Sequence
Translation from 16 to 1885
> BO11182.pep
MFSRPSLCGTVGKLCRCGTSATGKTAVAAATVPTARHYHEVVGDIICPSQ
VRGIDHIRDPRLNKGLAFTLEERQTLGIHGLQPARFKTQEEQLQLCKIAV
NRYTEPLNKYLYLSDLYDRNERLFFRFLSENIEDLMPIVYTPTVGLACQR
FGLIYRRPHGLFITYNDRGHIFDVMKNWPEPNVRAICVTDGERILGLGDL
GACGMGIPVGKLALYTALAGIKPHQCLPIVVDVGTNNIDLLEDPLYVGLR
QKRVVGREYDEFIDEFMEAVVQRYGQNTLIQFEDFGNHNAFRFLDKYRNT
YCTFNDDIQGTASVAVAGLYASKRITGKSFKDYTFLFAGAGEAAIGIADL
TVKAMVQDGVPIEEAYNRIYMVDIDGLLTKSRKVGNLDGHKIHYAKDINP
MSDLAEIVSTIKPSVLIGASAAAGIFTPEILRTMADNNERPVVFALSNPT
SKAECTAEDAYKHTDARVIFSSGSPFPPVQIGDKTFYPGQGNNAYIFPGV
GLGVICTGTHHIPDEMFLIAAQELANFVEPSDIERGSLYPPLSSIRNVSM
NIAVGVTKCAYDRGLASTYPEPQDKRKWLENQLYNFNYESSMPASWVWPR
MPYIKTREESPLIAAIKASFLDH
BO11182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Men-b-PA | 617 | CG5889-PA | 1..617 | 1..617 | 3253 | 100 | Plus |
Men-b-PC | 624 | CG5889-PC | 1..611 | 1..611 | 3211 | 99.5 | Plus |
Men-b-PB | 621 | CG5889-PB | 1..611 | 1..611 | 3211 | 99.5 | Plus |
Men-PC | 578 | CG10120-PC | 25..576 | 39..596 | 1693 | 58.8 | Plus |
Men-PA | 759 | CG10120-PA | 206..757 | 39..596 | 1693 | 58.8 | Plus |