Clone BO11183 Report

Search the DGRC for BO11183

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:111
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LD-RA
Protein status:BO11183.pep: validated full length
Sequenced Size:880

Clone Sequence Records

BO11183.3prime Sequence

749 bp (645 high quality bases) assembled on 2006-04-19

> BO11183.3prime
ATGGTCTAGAAAGCTTGCCTTGGACGTTTGGTGGCTCGCGTAGTGCGGCC
AGTGCCTCAGTTCCCGCTGCAGTGCGTCCGTATAGCTGCCCAACACGAAG
AGTTGGTAAATTGGCTGCAGAATCCGACGCTTTAAAGACTCAAGGATCAG
AGCCTGGGCGGCCATCAACTGGCAATCGATGGGTGGTCTGCCGCTGAAGT
TACCCACAAAGGCCATCACCAACGAGTCTATTCCATTTAGATCCCTTGGA
TACTGGCTCCGATAGTGCCATCCTTGTGCCTCGAAAACCTGACAATCACC
GGCGACCAGAAAGTTGTAGGGCAGCTCCCCCACATGCGACCTTTCCAGCT
TATGCAATACATCCGGGCAATCATCGTGGCATTCATTGCTTCCAGTGTGG
GTAAAAATCACTGTGCCGACACCGATCGGATCGAAAAGAGTTCCCCGACC
CTGAAGTTCCATATCCGACCATATGCCATGACCCACGATACTGAGTCGAT
AGCCAAAGTCCGGCGTTTGGGTTTGTCTCCAGAGCAAATAGGCGGCCAGT
GCCAAGGCGGATGCACACATGACCAGCAGTCCCACCGAGCGCCAATTGAA
GCAGTCTTCGTGGAGCGTCGGGTTCCTTCGGCAATTCGAAGGCGTCGTGG
AGGAGGCTGAGACTGAGGCTGTGAGGGATGAGGACGTCTTGATGGACCGC
TGAGCAGCTGCCAGCAAGGGAGTGGATTCGCTTGCAACGCCTTCCCTGT

BO11183.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG33717-PB 849 PGRP-LD-RB 120..846 745..19 3635 100 Minus
CG33717-PA 849 PGRP-LD-RA 120..846 745..19 3635 100 Minus
CG33717-PC 849 PGRP-LD-RC 120..846 745..19 3635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LD-RD 2720 CG33717-RD 545..1275 749..19 3640 99.9 Minus
PGRP-LD-RC 3010 CG33717-RC 835..1565 749..19 3640 99.9 Minus
PGRP-LD-RA 3600 CG33717-RA 1425..2155 749..19 3640 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5782917..5783240 342..19 1620 100 Minus
3L 28110227 3L 5782081..5782308 749..522 1125 99.6 Minus
3L 28110227 3L 5782671..5782849 521..343 895 100 Minus
Blast to na_te.dros performed on 2015-02-09 02:55:32 has no hits.

BO11183.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:25 Download gff for BO11183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33717-PA 116..849 16..749 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:51 Download gff for BO11183.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33717-PC 116..849 16..749 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:51:07 Download gff for BO11183.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RA 1425..2161 13..749 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:24:00 Download gff for BO11183.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RA 1425..2161 13..749 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:24:00 Download gff for BO11183.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5782081..5782308 522..749 99 -> Minus
3L 5782671..5782849 343..521 100 -> Minus
3L 5782917..5783246 13..342 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:51:07 Download gff for BO11183.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5775181..5775408 522..749 99 -> Minus
arm_3L 5775771..5775949 343..521 100 -> Minus
arm_3L 5776017..5776346 13..342 99   Minus

BO11183.5prime Sequence

762 bp (709 high quality bases) assembled on 2006-04-19

> BO11183.5prime
GAAGTTATCAGTCGACATGGACTCCAGCCACATAGCCGTGCGAGTGGCAC
GTCGTAGTCCCTCGCCGGCCGCCGTCTCTCAGTCGTCGTACGGCAGCCTG
GGTTCCAGCCAAGATATACACATTCGAGTGGACAAGGAAGGCGTTGCAAG
CGAATCCACTCCCTTGCTGGCAGCTGCTCAGCGGTCCATCAAGACGTCCT
CATCCCTCACAGCCTCAGTCTCAGCCTCCTCCACGACGCCTTCGAATTGC
CGAAGGAACCCGACGCTCCACGAAGACTGCTTCAATTGGCGCTCGGTGGG
ACTGCTGGTCATGTGTGCATCCGCCTTGGCACTGGCCGCCTATTTGCTCT
GGAGACAAACCCAAACGCCGGACTTTGGCTATCGACTCAGTATCGTGGGT
CATGGCATATGGTCGGATATGGAACTTCAGGGTCGGGGAACTCTTTTCGA
TCCGATCGGTGTCGGCACAGTGATTTTTACCCACACTGGAAGCAATGAAT
GCCACGATGATTGCCCGGATGTATTGCATAAGCTGGAAAGGTCGCATGTG
GGGGAGCTGCCCTACAACTTTCTGGTCGCCGGTGATTGTCAGGTTTTCGA
GGCACAAGGATGGCACTATCGGAGCCAGTATCCAAGGGATCTAAATGGAA
TAGACTCGTTGGTGATGGCCTTTGTGGGTAACTTCAGCGGCAGACCACCC
ATCGATTGCCAGTTGATGGCCGCCCAGGCTCTGATCCTTGAGTCTTTAAA
GCGTCGGATTCT

BO11183.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33717-PB 849 PGRP-LD-RB 1..746 17..762 3730 100 Plus
CG33717-PA 849 PGRP-LD-RA 1..746 17..762 3730 100 Plus
CG33717-PC 849 PGRP-LD-RC 1..746 17..762 3730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LD-RC 3010 CG33717-RC 719..1465 16..762 3735 100 Plus
PGRP-LD-RA 3600 CG33717-RA 1309..2055 16..762 3735 100 Plus
PGRP-LD-RB 3563 CG33717-RB 1272..2018 16..762 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5781996..5782308 47..359 1565 100 Plus
3L 28110227 3L 5782917..5783140 539..762 1120 100 Plus
3L 28110227 3L 5782671..5782849 360..538 895 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:46:40 has no hits.

BO11183.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:27 Download gff for BO11183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33717-PA 1..746 17..762 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:53 Download gff for BO11183.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33717-PC 1..746 17..762 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:56:19 Download gff for BO11183.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RB 1272..2018 16..762 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:31 Download gff for BO11183.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RB 1272..2018 16..762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:31 Download gff for BO11183.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5781691..5781722 16..47 100 -> Plus
3L 5781997..5782308 48..359 100 -> Plus
3L 5782671..5782849 360..538 100 -> Plus
3L 5782917..5783140 539..762 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:56:19 Download gff for BO11183.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5774791..5774822 16..47 100 -> Plus
arm_3L 5775097..5775408 48..359 100 -> Plus
arm_3L 5775771..5775949 360..538 100 -> Plus
arm_3L 5776017..5776240 539..762 100   Plus

BO11183.complete Sequence

880 bp (880 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ632023

> BO11183.complete
GAAGTTATCAGTCGACATGGACTCCAGCCACATAGCCGTGCGAGTGGCAC
GTCGTAGTCCCTCGCCGGCCGCCGTCTCTCAGTCGTCGTACGGCAGCCTG
GGTTCCAGCCAAGATATACACATTCGAGTGGACAAGGAAGGCGTTGCAAG
CGAATCCACTCCCTTGCTGGCAGCTGCTCAGCGGTCCATCAAGACGTCCT
CATCCCTCACAGCCTCAGTCTCAGCCTCCTCCACGACGCCTTCGAATTGC
CGAAGGAACCCGACGCTCCACGAAGACTGCTTCAATTGGCGCTCGGTGGG
ACTGCTGGTCATGTGTGCATCCGCCTTGGCACTGGCCGCCTATTTGCTCT
GGAGACAAACCCAAACGCCGGACTTTGGCTATCGACTCAGTATCGTGGGT
CATGGCATATGGTCGGATATGGAACTTCAGGGTCGGGGAACTCTTTTCGA
TCCGATCGGTGTCGGCACAGTGATTTTTACCCACACTGGAAGCAATGAAT
GCCACGATGATTGCCCGGATGTATTGCATAAGCTGGAAAGGTCGCATGTG
GGGGAGCTGCCCTACAACTTTCTGGTCGCCGGTGATTGTCAGGTTTTCGA
GGCACAAGGATGGCACTATCGGAGCCAGTATCCAAGGGATCTAAATGGAA
TAGACTCGTTGGTGATGGCCTTTGTGGGTAACTTCAGCGGCAGACCACCC
ATCGATTGCCAGTTGATGGCCGCCCAGGCTCTGATCCTTGAGTCTTTAAA
GCGTCGGATTCTGCAGCCAATTTACCAACTCTTCGTGTTGGGCAGCTATA
CGGACGCACTGCAGCGGGAACTGAGGCACTGGCCGCACTACGCGAGCCAC
CAAACGTCCAAGGCAAGCTTTCTAGACCAT

BO11183.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LD-RC 849 CG33717-PC 1..846 17..862 4230 100 Plus
PGRP-LD-RA 849 CG33717-PA 1..846 17..862 4230 100 Plus
PGRP-LD-RB 849 CG33717-PB 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LD-RC 3010 CG33717-RC 719..1565 16..862 4235 100 Plus
PGRP-LD-RA 3600 CG33717-RA 1309..2155 16..862 4235 100 Plus
PGRP-LD-RB 3563 CG33717-RB 1272..2118 16..862 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5782917..5783240 539..862 1620 100 Plus
3L 28110227 3L 5781996..5782308 47..359 1565 100 Plus
3L 28110227 3L 5782671..5782849 360..538 895 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:22:30 has no hits.

BO11183.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:28 Download gff for BO11183.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RC 1..849 17..865 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:44 Download gff for BO11183.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RC 725..1577 16..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:53 Download gff for BO11183.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RB 1273..2118 17..864 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:28 Download gff for BO11183.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RC 725..1577 16..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:23 Download gff for BO11183.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RB 1273..2118 17..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:23 Download gff for BO11183.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5781692..5781722 17..47 100 -> Plus
3L 5781997..5782308 48..359 100 -> Plus
3L 5782671..5782849 360..538 100 -> Plus
3L 5782917..5783240 539..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:53 Download gff for BO11183.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5774792..5774822 17..47 100 -> Plus
arm_3L 5775097..5775408 48..359 100 -> Plus
arm_3L 5775771..5775949 360..538 100 -> Plus
arm_3L 5776017..5776340 539..864 99   Plus

BO11183.pep Sequence

Translation from 16 to 880

> BO11183.pep
MDSSHIAVRVARRSPSPAAVSQSSYGSLGSSQDIHIRVDKEGVASESTPL
LAAAQRSIKTSSSLTASVSASSTTPSNCRRNPTLHEDCFNWRSVGLLVMC
ASALALAAYLLWRQTQTPDFGYRLSIVGHGIWSDMELQGRGTLFDPIGVG
TVIFTHTGSNECHDDCPDVLHKLERSHVGELPYNFLVAGDCQVFEAQGWH
YRSQYPRDLNGIDSLVMAFVGNFSGRPPIDCQLMAAQALILESLKRRILQ
PIYQLFVLGSYTDALQRELRHWPHYASHQTSKASFLDH

BO11183.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LD-PC 282 CG33717-PC 1..282 1..282 1483 100 Plus
PGRP-LD-PA 282 CG33717-PA 1..282 1..282 1483 100 Plus
PGRP-LD-PB 282 CG33717-PB 1..282 1..282 1483 100 Plus
PGRP-LD-PD 327 CG33717-PD 55..327 10..282 1438 99.6 Plus
PGRP-SA-PB 203 CG11709-PB 64..202 152..278 159 31.2 Plus