Clone Sequence Records
BO11183.3prime Sequence
749 bp (645 high quality bases) assembled on 2006-04-19
> BO11183.3prime
ATGGTCTAGAAAGCTTGCCTTGGACGTTTGGTGGCTCGCGTAGTGCGGCC
AGTGCCTCAGTTCCCGCTGCAGTGCGTCCGTATAGCTGCCCAACACGAAG
AGTTGGTAAATTGGCTGCAGAATCCGACGCTTTAAAGACTCAAGGATCAG
AGCCTGGGCGGCCATCAACTGGCAATCGATGGGTGGTCTGCCGCTGAAGT
TACCCACAAAGGCCATCACCAACGAGTCTATTCCATTTAGATCCCTTGGA
TACTGGCTCCGATAGTGCCATCCTTGTGCCTCGAAAACCTGACAATCACC
GGCGACCAGAAAGTTGTAGGGCAGCTCCCCCACATGCGACCTTTCCAGCT
TATGCAATACATCCGGGCAATCATCGTGGCATTCATTGCTTCCAGTGTGG
GTAAAAATCACTGTGCCGACACCGATCGGATCGAAAAGAGTTCCCCGACC
CTGAAGTTCCATATCCGACCATATGCCATGACCCACGATACTGAGTCGAT
AGCCAAAGTCCGGCGTTTGGGTTTGTCTCCAGAGCAAATAGGCGGCCAGT
GCCAAGGCGGATGCACACATGACCAGCAGTCCCACCGAGCGCCAATTGAA
GCAGTCTTCGTGGAGCGTCGGGTTCCTTCGGCAATTCGAAGGCGTCGTGG
AGGAGGCTGAGACTGAGGCTGTGAGGGATGAGGACGTCTTGATGGACCGC
TGAGCAGCTGCCAGCAAGGGAGTGGATTCGCTTGCAACGCCTTCCCTGT
BO11183.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33717-PB | 849 | PGRP-LD-RB | 120..846 | 745..19 | 3635 | 100 | Minus |
CG33717-PA | 849 | PGRP-LD-RA | 120..846 | 745..19 | 3635 | 100 | Minus |
CG33717-PC | 849 | PGRP-LD-RC | 120..846 | 745..19 | 3635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LD-RD | 2720 | CG33717-RD | 545..1275 | 749..19 | 3640 | 99.9 | Minus |
PGRP-LD-RC | 3010 | CG33717-RC | 835..1565 | 749..19 | 3640 | 99.9 | Minus |
PGRP-LD-RA | 3600 | CG33717-RA | 1425..2155 | 749..19 | 3640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5782917..5783240 | 342..19 | 1620 | 100 | Minus |
3L | 28110227 | 3L | 5782081..5782308 | 749..522 | 1125 | 99.6 | Minus |
3L | 28110227 | 3L | 5782671..5782849 | 521..343 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:55:32 has no hits.
BO11183.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:25 Download gff for
BO11183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33717-PA | 116..849 | 16..749 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:51 Download gff for
BO11183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33717-PC | 116..849 | 16..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:51:07 Download gff for
BO11183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RA | 1425..2161 | 13..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:24:00 Download gff for
BO11183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RA | 1425..2161 | 13..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:24:00 Download gff for
BO11183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5782081..5782308 | 522..749 | 99 | -> | Minus |
3L | 5782671..5782849 | 343..521 | 100 | -> | Minus |
3L | 5782917..5783246 | 13..342 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:51:07 Download gff for
BO11183.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5775181..5775408 | 522..749 | 99 | -> | Minus |
arm_3L | 5775771..5775949 | 343..521 | 100 | -> | Minus |
arm_3L | 5776017..5776346 | 13..342 | 99 | | Minus |
BO11183.5prime Sequence
762 bp (709 high quality bases) assembled on 2006-04-19
> BO11183.5prime
GAAGTTATCAGTCGACATGGACTCCAGCCACATAGCCGTGCGAGTGGCAC
GTCGTAGTCCCTCGCCGGCCGCCGTCTCTCAGTCGTCGTACGGCAGCCTG
GGTTCCAGCCAAGATATACACATTCGAGTGGACAAGGAAGGCGTTGCAAG
CGAATCCACTCCCTTGCTGGCAGCTGCTCAGCGGTCCATCAAGACGTCCT
CATCCCTCACAGCCTCAGTCTCAGCCTCCTCCACGACGCCTTCGAATTGC
CGAAGGAACCCGACGCTCCACGAAGACTGCTTCAATTGGCGCTCGGTGGG
ACTGCTGGTCATGTGTGCATCCGCCTTGGCACTGGCCGCCTATTTGCTCT
GGAGACAAACCCAAACGCCGGACTTTGGCTATCGACTCAGTATCGTGGGT
CATGGCATATGGTCGGATATGGAACTTCAGGGTCGGGGAACTCTTTTCGA
TCCGATCGGTGTCGGCACAGTGATTTTTACCCACACTGGAAGCAATGAAT
GCCACGATGATTGCCCGGATGTATTGCATAAGCTGGAAAGGTCGCATGTG
GGGGAGCTGCCCTACAACTTTCTGGTCGCCGGTGATTGTCAGGTTTTCGA
GGCACAAGGATGGCACTATCGGAGCCAGTATCCAAGGGATCTAAATGGAA
TAGACTCGTTGGTGATGGCCTTTGTGGGTAACTTCAGCGGCAGACCACCC
ATCGATTGCCAGTTGATGGCCGCCCAGGCTCTGATCCTTGAGTCTTTAAA
GCGTCGGATTCT
BO11183.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33717-PB | 849 | PGRP-LD-RB | 1..746 | 17..762 | 3730 | 100 | Plus |
CG33717-PA | 849 | PGRP-LD-RA | 1..746 | 17..762 | 3730 | 100 | Plus |
CG33717-PC | 849 | PGRP-LD-RC | 1..746 | 17..762 | 3730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LD-RC | 3010 | CG33717-RC | 719..1465 | 16..762 | 3735 | 100 | Plus |
PGRP-LD-RA | 3600 | CG33717-RA | 1309..2055 | 16..762 | 3735 | 100 | Plus |
PGRP-LD-RB | 3563 | CG33717-RB | 1272..2018 | 16..762 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5781996..5782308 | 47..359 | 1565 | 100 | Plus |
3L | 28110227 | 3L | 5782917..5783140 | 539..762 | 1120 | 100 | Plus |
3L | 28110227 | 3L | 5782671..5782849 | 360..538 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:46:40 has no hits.
BO11183.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:27 Download gff for
BO11183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33717-PA | 1..746 | 17..762 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:21:53 Download gff for
BO11183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33717-PC | 1..746 | 17..762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:56:19 Download gff for
BO11183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RB | 1272..2018 | 16..762 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:31 Download gff for
BO11183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RB | 1272..2018 | 16..762 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:31 Download gff for
BO11183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5781691..5781722 | 16..47 | 100 | -> | Plus |
3L | 5781997..5782308 | 48..359 | 100 | -> | Plus |
3L | 5782671..5782849 | 360..538 | 100 | -> | Plus |
3L | 5782917..5783140 | 539..762 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:56:19 Download gff for
BO11183.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5774791..5774822 | 16..47 | 100 | -> | Plus |
arm_3L | 5775097..5775408 | 48..359 | 100 | -> | Plus |
arm_3L | 5775771..5775949 | 360..538 | 100 | -> | Plus |
arm_3L | 5776017..5776240 | 539..762 | 100 | | Plus |
BO11183.complete Sequence
880 bp (880 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ632023
> BO11183.complete
GAAGTTATCAGTCGACATGGACTCCAGCCACATAGCCGTGCGAGTGGCAC
GTCGTAGTCCCTCGCCGGCCGCCGTCTCTCAGTCGTCGTACGGCAGCCTG
GGTTCCAGCCAAGATATACACATTCGAGTGGACAAGGAAGGCGTTGCAAG
CGAATCCACTCCCTTGCTGGCAGCTGCTCAGCGGTCCATCAAGACGTCCT
CATCCCTCACAGCCTCAGTCTCAGCCTCCTCCACGACGCCTTCGAATTGC
CGAAGGAACCCGACGCTCCACGAAGACTGCTTCAATTGGCGCTCGGTGGG
ACTGCTGGTCATGTGTGCATCCGCCTTGGCACTGGCCGCCTATTTGCTCT
GGAGACAAACCCAAACGCCGGACTTTGGCTATCGACTCAGTATCGTGGGT
CATGGCATATGGTCGGATATGGAACTTCAGGGTCGGGGAACTCTTTTCGA
TCCGATCGGTGTCGGCACAGTGATTTTTACCCACACTGGAAGCAATGAAT
GCCACGATGATTGCCCGGATGTATTGCATAAGCTGGAAAGGTCGCATGTG
GGGGAGCTGCCCTACAACTTTCTGGTCGCCGGTGATTGTCAGGTTTTCGA
GGCACAAGGATGGCACTATCGGAGCCAGTATCCAAGGGATCTAAATGGAA
TAGACTCGTTGGTGATGGCCTTTGTGGGTAACTTCAGCGGCAGACCACCC
ATCGATTGCCAGTTGATGGCCGCCCAGGCTCTGATCCTTGAGTCTTTAAA
GCGTCGGATTCTGCAGCCAATTTACCAACTCTTCGTGTTGGGCAGCTATA
CGGACGCACTGCAGCGGGAACTGAGGCACTGGCCGCACTACGCGAGCCAC
CAAACGTCCAAGGCAAGCTTTCTAGACCAT
BO11183.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LD-RC | 849 | CG33717-PC | 1..846 | 17..862 | 4230 | 100 | Plus |
PGRP-LD-RA | 849 | CG33717-PA | 1..846 | 17..862 | 4230 | 100 | Plus |
PGRP-LD-RB | 849 | CG33717-PB | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LD-RC | 3010 | CG33717-RC | 719..1565 | 16..862 | 4235 | 100 | Plus |
PGRP-LD-RA | 3600 | CG33717-RA | 1309..2155 | 16..862 | 4235 | 100 | Plus |
PGRP-LD-RB | 3563 | CG33717-RB | 1272..2118 | 16..862 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5782917..5783240 | 539..862 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 5781996..5782308 | 47..359 | 1565 | 100 | Plus |
3L | 28110227 | 3L | 5782671..5782849 | 360..538 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:22:30 has no hits.
BO11183.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:48:28 Download gff for
BO11183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RC | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:19:44 Download gff for
BO11183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RC | 725..1577 | 16..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:53 Download gff for
BO11183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RB | 1273..2118 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:48:28 Download gff for
BO11183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RC | 725..1577 | 16..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:23 Download gff for
BO11183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RB | 1273..2118 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:23 Download gff for
BO11183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5781692..5781722 | 17..47 | 100 | -> | Plus |
3L | 5781997..5782308 | 48..359 | 100 | -> | Plus |
3L | 5782671..5782849 | 360..538 | 100 | -> | Plus |
3L | 5782917..5783240 | 539..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:53 Download gff for
BO11183.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5774792..5774822 | 17..47 | 100 | -> | Plus |
arm_3L | 5775097..5775408 | 48..359 | 100 | -> | Plus |
arm_3L | 5775771..5775949 | 360..538 | 100 | -> | Plus |
arm_3L | 5776017..5776340 | 539..864 | 99 | | Plus |
BO11183.pep Sequence
Translation from 16 to 880
> BO11183.pep
MDSSHIAVRVARRSPSPAAVSQSSYGSLGSSQDIHIRVDKEGVASESTPL
LAAAQRSIKTSSSLTASVSASSTTPSNCRRNPTLHEDCFNWRSVGLLVMC
ASALALAAYLLWRQTQTPDFGYRLSIVGHGIWSDMELQGRGTLFDPIGVG
TVIFTHTGSNECHDDCPDVLHKLERSHVGELPYNFLVAGDCQVFEAQGWH
YRSQYPRDLNGIDSLVMAFVGNFSGRPPIDCQLMAAQALILESLKRRILQ
PIYQLFVLGSYTDALQRELRHWPHYASHQTSKASFLDH
BO11183.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LD-PC | 282 | CG33717-PC | 1..282 | 1..282 | 1483 | 100 | Plus |
PGRP-LD-PA | 282 | CG33717-PA | 1..282 | 1..282 | 1483 | 100 | Plus |
PGRP-LD-PB | 282 | CG33717-PB | 1..282 | 1..282 | 1483 | 100 | Plus |
PGRP-LD-PD | 327 | CG33717-PD | 55..327 | 10..282 | 1438 | 99.6 | Plus |
PGRP-SA-PB | 203 | CG11709-PB | 64..202 | 152..278 | 159 | 31.2 | Plus |