Clone Sequence Records
BO11190.3prime Sequence
861 bp (838 high quality bases) assembled on 2006-04-19
> BO11190.3prime
ATGGTCTAGAAAGCTTGCATTGTTGGCTCGCTTTAGTTCTTCCTCTATTC
CAAGGTAGTCTAGGAACCAGGTGAAGTCCACCAGGCGCCCTTTGTGCAGG
AAGGGCAACTTGGGGCAGAGCTCAAAGGCAATGTTGAGAGGAGCAATGTC
GGGCACTTGGTCGTTGCGCATGTTGAAGAAGGCGAGAAAGTCGCGCACCT
CGATTTCGTTCTGTCCGTTGCGCTGCAGCACCATCAGTATGTCCTCCACC
AGCTCCAAGCTGAAGGGCAGCCGGCAGCCTCGCAAAGTAGACCTCACTTG
ACCTTCACTGATGTACGGCTTGCACGCCGGATTAATGTGGCTCAGATGAT
CGTTCAGCTGATCCATGCCGTTCCACAAAGCTCGCTTCAGCTCCAGTTGG
GCGGCAGCTCGCACTCGATTCCTATCGCAGCTGGGAGGCATTGCCTGCTC
AGCCGAGAAAAAGCGACACACGGTCACAATCTCATGGTTGAGCAGGCAAT
CCTTGGACAGATAGGACAGGAGAGTCGAGCGCAACGTTTCGAAGCTAACG
GCGGTATAGTCGCCGAGGTCACCATCCGGTTTGCAGCGCAGCACAAACTG
CTTGTAATCCGGACGCACTGCCTCGCGTATCTTCTGCATGATTTTTTGAA
TGTCCGCTACGGGGAACTCGCTGGGATGTTGCTCCATGTACATCAGCGTG
AACTCATCAGCGGAAACAATGTGGAAAATGTGATCCTTAAGAGTCATTGT
GCGTCCTATATAGAAGTCATTGGCCCTGTAGTATTCAGGTCTTGATGAGC
TGTACATATCCTGACCCGGCAGTGGCACACGTGCCCTTTTAAGAATTCGC
CGCCCAGGAAG
BO11190.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11048-PA | 2298 | CG11048-RA | 1469..2295 | 845..19 | 4135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.2-RA | 2572 | CG11048-RA | 1623..2466 | 861..19 | 4195 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20242118..20242767 | 668..19 | 3250 | 100 | Minus |
| 2R | 25286936 | 2R | 20241800..20241995 | 861..667 | 930 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 14:03:25 has no hits.
BO11190.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:36 Download gff for
BO11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11048-PA | 1452..2298 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:04 Download gff for
BO11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11048-PA | 1452..2298 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:39:39 Download gff for
BO11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.2-RA | 1623..2469 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:23:27 Download gff for
BO11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.2-RA | 1623..2469 | 15..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:23:27 Download gff for
BO11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20241800..20241995 | 667..861 | 99 | -> | Minus |
| 2R | 20242120..20242770 | 15..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:39:39 Download gff for
BO11190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16129305..16129500 | 667..861 | 99 | -> | Minus |
| arm_2R | 16129625..16130275 | 15..666 | 99 | | Minus |
BO11190.5prime Sequence
887 bp (835 high quality bases) assembled on 2006-04-19
> BO11190.5prime
GAAGTTATCAGTCGACATGATGCGACTACCGGGAATGCCCATGCTACCAG
GTGCGCAGTTCTACGATCGTGGAAAGCGTCGCCATCCGCGGCAGCAAACG
CTGATGCACTACCAGGGCATTCAGATGCTTTCGGACCGCCGGGAGCCGGA
ACTGGTGGAGCCCAATGGCATTGTGGCCGATCCCAAGTGTCCGCCCGTGC
CCGCCCAGCTCAATAGCCTGTGGGCTCCGAAGGCCACCACCAAGTTGCCA
CCCTGGTTGGCCTACGACAAGCAGGTGCTGTGCTTCAACGCCTACTTCAA
GGAGAACCTGACGGAGATCTATCACGCTCCCTACCAGGTGCGCAAGGTGA
AGATCTTCTTCTACCTCGAGGATGGCACCATGCAGGTCACCGAGCCGAAA
GTGGAGAACTCAGGCATACCGCAAGGCTGTCTAGTTCACCGCCAGCGCAT
CCCAAAAGCTCCACCCACCGACCGCGAGTTCATCTCCATCTTCGACCTGA
ACGTGGACACGGATGTGCAGATCTTCGATCGGGTGTATCACATCAGCGGA
TGTGACGTCTTCACGAGGCAGTTCCTCAATCGAGCTGGCATCTTCGTGCC
TGAGGCCCAGCAGGAGCCATGTGATCCCACAACAGAAATTCGAAAGCGAT
CAGGCTTGAAGCAAACGGGTAATACCGCCACTTCGGCTTTGCCCAAAAAA
CATGCGTTTGCCCAGTTCCTGGAGTTCGACAGGCGAGTCCTTAAGTTTCA
GGGATATTGGAACGATCGTAGTGAGTTTGGTGATGTGCGAAAGCTTGAAG
TCTGCTACTACCTGGCCGATGACACAATTGACATAAAAGAGAAATTTCCA
CGAAATTCTGGGCGAGAAGGTCCCACGACTTTTCTAA
BO11190.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11048-PA | 2298 | CG11048-RA | 1..871 | 17..887 | 4330 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.2-RA | 2572 | CG11048-RA | 156..1042 | 1..887 | 4345 | 99.3 | Plus |
| Efhc1.1-RA | 2559 | CG8959-RA | 300..599 | 246..545 | 300 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20240212..20240765 | 68..621 | 2770 | 100 | Plus |
| 2R | 25286936 | 2R | 20240886..20241152 | 621..887 | 1320 | 99.6 | Plus |
| X | 23542271 | X | 15783054..15783353 | 545..246 | 300 | 73.3 | Minus |
| 2R | 25286936 | 2R | 20240091..20240157 | 1..67 | 260 | 92.5 | Plus |
Blast to na_te.dros performed 2015-02-12 01:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gtwin | 7411 | gtwin GTWIN 7411bp | 5551..5586 | 504..469 | 108 | 77.8 | Minus |
BO11190.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:37 Download gff for
BO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11048-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:05 Download gff for
BO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11048-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:51 Download gff for
BO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.2-RA | 160..1042 | 5..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:37:10 Download gff for
BO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.2-RA | 160..1042 | 5..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:37:10 Download gff for
BO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20240095..20240157 | 5..67 | 93 | -> | Plus |
| 2R | 20240212..20240765 | 68..621 | 100 | -> | Plus |
| 2R | 20240887..20241152 | 622..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:51 Download gff for
BO11190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16127600..16127662 | 5..67 | 93 | -> | Plus |
| arm_2R | 16127717..16128270 | 68..621 | 100 | -> | Plus |
| arm_2R | 16128392..16128657 | 622..887 | 99 | | Plus |
BO11190.complete Sequence
2329 bp assembled on 2007-11-02
GenBank Submission: FJ632024
> BO11190.complete
GAAGTTATCAGTCGACATGATGCGACTACCGGGAATGCCCATGCTACCAG
GTGCGCAGTTCTACGATCGTGGAAAGCGTCGCCATCCGCGGCAGCAAACG
CTGATGCACTACCAGGGCATTCAGATGCTTTCGGACCGCCGGGAGCCGGA
ACTGGTGGAGCCCAATGGCATTGTGGCCGATCCCAAGTGTCCGCCCGTGC
CCGCCCAGCTCAATAGCCTGTGGGCTCCGAAGGCCACCACCAAGTTGCCA
CCCTGGTTGGCCTACGACAAGCAGGTGCTGTGCTTCAACGCCTACTTCAA
GGAGAACCTGACGGAGATCTATCACGCTCCCTACCAGGTGCGCAAGGTGA
AGATCTTCTTCTACCTCGAGGATGGCACCATGCAGGTCACCGAGCCGAAA
GTGGAGAACTCAGGCATACCGCAAGGCTGTCTAGTTCACCGCCAGCGCAT
CCCAAAAGCTCCACCCACCGACCGCGAGTTCATCTCCATCTTCGACCTGA
ACGTGGACACGGATGTGCAGATCTTCGATCGGGTGTATCACATCAGCGGA
TGTGACGTCTTCACGAGGCAGTTCCTCAATCGAGCTGGCATCTTCGTGCC
TGAGGCCCAGCAGGAGCCATGTGATCCCACAACAGAAATTCGAAAGCGAT
CAGGCTTGAAGCAAACGGGTAATACCGCCACTTCGGCTTTGCCCAAAAAA
CATGCGTTTGCCCAGTTCCTGGAGTTCGACAGGCGAGTCCTTAAGTTTCA
GGGATATTGGAACGATCGTAGTGAGTTTGGTGATGTGCGAAAGCTTGAAG
TCTGCTACTACCTGGCCGATGACACAATTGACATAAAGGAGAAATTTCCA
CGAAATTCTGGGCGAGAAGGTCCCACGACTTTTCTAAAACGAGGCAAGTT
GCCAAAGGAGTTTTCTGGTCTTCCTTTGCCTGGGCAACAAACGGCCATGA
CGTTGCTTAATGTGCTGGGAAACAGTATGCGCGATGTGCGTTACGTAGCC
GACCCGTTGAACACTGGTCAAAAAGAGGTTCAACATTACACCGATCAGGA
TCTGCAAATAGGCGCAGTGCTAAATGTTTTTGGGAGGAGTGTCGTACTTA
CAAGCTGCGATCAGTTCACACAGAGCTACTACAGAGAAAAATACGGCATC
CAGGAATTCAGCCCTCAGCCGATTCCAGAACGAAGTGATATTCGACCGTA
CACTCAGGGTGGCATGGGATCCCGCCGATTGCCACCCTACAATGGCTGGG
GTAGCCACGAGGATTCCGAAGGCAACTGTATCACCGTGGAGCCCAAACCG
CCACAGGCCGATTTCAAGAAGCTCTTCAAGTACGACGGATGCATCCTGCG
CTTCGGAGCCAAGCTGATCTCGGCCATTCGGGATAATGGAGAGCGTGACT
TTGTCATCAGCTATTTCCTGGCCGATGACACGTTGCAAATCTATGAGACG
TCACGTCGAAACTCGGGCTTCCTGGGCGGCGAATTTCTTAAAAGGGCACG
TGTGCCACTGCCGGGTCAGGATATGTACAGCTCATCAAGACCTGAATACT
ACAGGGCCAATGACTTCTATATAGGACGCACAATGACTCTTAAGGATCAC
ATTTTCCACATTGTTTCCGCTGATGAGTTCACGCTGATGTACATGGAGCA
ACATCCCAGCGAGTTCCCCGTAGCGGACATTCAAAAAATCATGCAGAAGA
TACGCGAGGCAGTGCGTCCGGATTACAAGCAGTTTGTGCTGCGCTGCAAA
CCGGATGGTGACCTCGGCGACTATACCGCCGTTAGCTTCGAAACGTTGCG
CTCGACTCTCCTGTCCTATCTGTCCAAGGATTGCCTGCTCAACCATGAGA
TTGTGACCGTGTGTCGCTTTTTCTCGGCTGAGCAGGCAATGCCTCCCAGC
TGCGATAGGAATCGAGTGCGAGCTGCCGCCCAACTGGAGCTGAAGCGAGC
TTTGTGGAACGGCATGGATCAGCTGAACGATCATCTGAGCCACATTAATC
CGGCGTGCAAGCCGTACATCAGTGAAGGTCAAGTGAGGTCTACTTTGCGA
GGCTGCCGGCTGCCCTTCAGCTTGGAGCTGGTGGAGGACATACTGATGGT
GCTGCAGCGCAACGGACAGAACGAAATCGAGGTGCGCGACTTTCTCGCCT
TCTTCAACATGCGCAACGACCAAGTGCCCGACATTGCTCCTCTCAACATT
GCCTTTGAGCTCTGCCCCAAGTTGCCCTTCCTGCACAAAGGGCGCCTGGT
GGACTTCACCTGGTTCCTAGACTACCTTGGAATAGAGGAAGAACTAAAGC
GAGCCAACAATGCAAGCTTTCTAGACCAT
BO11190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.2-RA | 2298 | CG11048-PA | 1..2295 | 17..2311 | 11475 | 100 | Plus |
| Efhc1.1-RA | 2382 | CG8959-PA | 224..523 | 246..545 | 300 | 73.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.2-RA | 2572 | CG11048-RA | 156..2466 | 1..2311 | 11480 | 99.8 | Plus |
| Efhc1.1-RA | 2559 | CG8959-RA | 300..599 | 246..545 | 300 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20242118..20242767 | 1662..2311 | 3250 | 100 | Plus |
| 2R | 25286936 | 2R | 20240212..20240765 | 68..621 | 2770 | 100 | Plus |
| 2R | 25286936 | 2R | 20241474..20241995 | 1142..1663 | 2610 | 100 | Plus |
| 2R | 25286936 | 2R | 20240886..20241406 | 621..1141 | 2605 | 100 | Plus |
| X | 23542271 | X | 15783054..15783353 | 545..246 | 300 | 73.3 | Minus |
| 2R | 25286936 | 2R | 20240091..20240157 | 1..67 | 260 | 92.5 | Plus |
Blast to na_te.dros performed 2014-11-27 12:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 4880..4938 | 1233..1292 | 117 | 68.3 | Plus |
BO11190.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:31 Download gff for
BO11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11048-RA | 1..2298 | 17..2315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:08:36 Download gff for
BO11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11048-RA | 109..2418 | 5..2315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:26 Download gff for
BO11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.2-RA | 172..2466 | 17..2313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:12 Download gff for
BO11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11048-RA | 121..2415 | 17..2313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:44 Download gff for
BO11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.2-RA | 172..2466 | 17..2313 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:44 Download gff for
BO11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20240107..20240157 | 17..67 | 100 | -> | Plus |
| 2R | 20240212..20240765 | 68..621 | 100 | -> | Plus |
| 2R | 20240887..20241406 | 622..1141 | 100 | -> | Plus |
| 2R | 20241474..20241995 | 1142..1663 | 100 | -> | Plus |
| 2R | 20242120..20242767 | 1664..2313 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:26 Download gff for
BO11190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16127612..16127662 | 17..67 | 100 | -> | Plus |
| arm_2R | 16127717..16128270 | 68..621 | 100 | -> | Plus |
| arm_2R | 16128392..16128911 | 622..1141 | 100 | -> | Plus |
| arm_2R | 16128979..16129500 | 1142..1663 | 100 | -> | Plus |
| arm_2R | 16129625..16130272 | 1664..2313 | 99 | | Plus |
BO11190.pep Sequence
Translation from 16 to 2329
> BO11190.pep
MMRLPGMPMLPGAQFYDRGKRRHPRQQTLMHYQGIQMLSDRREPELVEPN
GIVADPKCPPVPAQLNSLWAPKATTKLPPWLAYDKQVLCFNAYFKENLTE
IYHAPYQVRKVKIFFYLEDGTMQVTEPKVENSGIPQGCLVHRQRIPKAPP
TDREFISIFDLNVDTDVQIFDRVYHISGCDVFTRQFLNRAGIFVPEAQQE
PCDPTTEIRKRSGLKQTGNTATSALPKKHAFAQFLEFDRRVLKFQGYWND
RSEFGDVRKLEVCYYLADDTIDIKEKFPRNSGREGPTTFLKRGKLPKEFS
GLPLPGQQTAMTLLNVLGNSMRDVRYVADPLNTGQKEVQHYTDQDLQIGA
VLNVFGRSVVLTSCDQFTQSYYREKYGIQEFSPQPIPERSDIRPYTQGGM
GSRRLPPYNGWGSHEDSEGNCITVEPKPPQADFKKLFKYDGCILRFGAKL
ISAIRDNGERDFVISYFLADDTLQIYETSRRNSGFLGGEFLKRARVPLPG
QDMYSSSRPEYYRANDFYIGRTMTLKDHIFHIVSADEFTLMYMEQHPSEF
PVADIQKIMQKIREAVRPDYKQFVLRCKPDGDLGDYTAVSFETLRSTLLS
YLSKDCLLNHEIVTVCRFFSAEQAMPPSCDRNRVRAAAQLELKRALWNGM
DQLNDHLSHINPACKPYISEGQVRSTLRGCRLPFSLELVEDILMVLQRNG
QNEIEVRDFLAFFNMRNDQVPDIAPLNIAFELCPKLPFLHKGRLVDFTWF
LDYLGIEEELKRANNASFLDH
BO11190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.2-PA | 765 | CG11048-PA | 1..765 | 1..765 | 4083 | 100 | Plus |
| Efhc1.1-PA | 793 | CG8959-PA | 1..749 | 1..756 | 2385 | 58.5 | Plus |
