Clone Sequence Records
BO11201.complete Sequence
2785 bp assembled on 2010-04-13
GenBank Submission: KX798847
> BO11201.complete
GAAGTTATCAGTCGACATGTCGCAGGACAGAATCGCCGGCATCGATGTGG
CAACCAATTCCACTGATATATCGAATATCATTAACGAGATGATCATCTGC
ATCAAGGGCAAGCAGATGCCCGAAGTTCACGAAAAAGCAATGGATCATTT
AAGCAAAATGATTGCCGCCAATAGTCGGGTCATTCGGGACTCAAATATGT
TGACTGAGCGCGAATGTGTCCAGAAGATAATGAAACTGCTGAGCGCCCGG
AATAAGAAGGAGGAGGGCAAAACTGTGTCGGATCACTTCAATGAGCTGTA
CAGGAAACTCACGTTGACCAAGTGCGATCCGCACATGAGGCACTCGCTAA
TGACCCATCTACTTACGATGACCGACAATTCGGATGCCGAAAAGGCAGTT
GCCAGCGAAGATCCACGTACTCAGTGCGATAATCTCACTCAGATTCTGGT
CAGTCGTCTTAACTCAATAAGTTCCTCCATAGCCAGTCTGAATGAGATGG
GAGTGGTCAACGGAAATGGAGTAGGAGCAGCAGCGGTAACAGGAGCAGCA
GCGGTAACAGGAGCAGCAGCGGTAACAGGAGCAGCAGCGGTAACAGGAGC
AGCAGCAAGCCACAGTTATGATGCCACACAGTCCAGCATCGGATTGAGAA
AACAGTCCTTGCCCAACTACCTGGATGCAACAAAGATGTTGCCCGAGTCT
CGACATGATATAGTGATGAGTGCCATTTACTCCTTCACCGGCGTTCAAGG
GAAGTATTTGAAGAAGGATGTGGTAACGGGCCGTTTCAAGCTGGATCAGC
AGAACATCAAGTTCCTGACCACCGGCCAAGCGGGCATGTTGCTGCGGCTC
TCCGAACTTGGCTACTACCACGATCGAGTGGTCAAGTTTTCGGATGTATC
GACCGGTTTCAATGCCATTGGCAGCATGGGCCAGGCCCTGATTTCCAAAC
TCAAGGAGGAGCTGGCGAATTTTCACGGGCAAGTGGCAATGCTTCACGAT
GAAATGCAGCGTTTTCGGCAGGCCTCGGTGAATGGAATTGCAAACAAGGG
GAAAAAGGATAGTGGGCCCGATGCTGGCGATGAAATGACGCTATTCAAGC
TGCTCGCCTGGTATATAAAGCCACTGCACCGGATGCAGTGGTTAACCAAG
ATTGCCGACGCCTGCCAGGTAAAGAAGGGCGGTGATTTGGCATCGACCGT
TTATGATTTCCTTGACAACGGTAACGATATGGTCAATAAATTGGTGGAGG
ATCTCCTAACTGCCATTTGTGGCCCACTGGTGCGCATGATCTCCAAATGG
ATTCTGGAGGGCGGCATTAGCGATATGCATAGAGAGTTCTTTGTGAAGTC
CATTAAAGATGTGGGCGTTGATCGGCTATGGCACGATAAATTCCGCCTAC
GATTGCCAATGCTGCCCAAGTTTGTGCCCATGGATATGGCCAATAAGATA
CTCATGACGGGCAAGTCCATTAATTTTCTAAGAGAAATCTGCGAGGAGCA
GGGTATGATGAAGGAGCGCGACGAACTAATGAAGGTCATGGAATCTAGTG
CCTCTCAAATCTTTTCGTACACACCGGACACCAGTTGGCATGCGGCCGTG
GAAACGTGCTACCAGCAGACCTCCAAACATGTCCTCGACATTATGGTGGG
CCCACACAAGCTGCTGGATCATTTGCACGGAATGCGGCGCTACTTGCTGT
TGGGCCAGGGCGATTTTATTAGCATTCTGATTGAGAACATGAAAAACGAA
CTGGAGCGACCGGGCCTTGATATATATGCTAACGATCTCACCTCCATGTT
GGATTCCGCTCTGCGCTGTACGAATGCCCAGTACGATGATCCTGATATTC
TAAACCATCTCGATGTGATTGTTCAACGACCGTTCAACGGTGATATTGGC
TGGAACATCATCTCGCTGCAGTACATTGTCCACGGACCACTGGCCGCCAT
GCTGGAGTCGACCATGCCAACGTACAAGGTGCTCTTCAAGCCACTCTGGC
GCATGAAGCACATGGAGTTTGTGCTCTCGATGAAGATCTGGAAGGAGCAG
ATGGGCAACGCAAAGGCCCTTCGTACAATGAAGTCCGAAATCGGCAAGGC
GTCACACCGCCTCAACCTTTTCACTTCCGAGATCATGCACTTCATCCACC
AAATGCAGTACTATGTGCTATTTGAGGTCATCGAGTGCAACTGGGTGGAG
CTACAGAAGAAGATGCAGAAGGCTACCACGTTGGACGAAATCCTGGAAGC
TCACGAGAAGTTTCTGCAAACGATTTTGGTGGGCTGTTTTGTCAGCAACA
AAGCGAGTGTGGAGCATTCGCTGGAGGTGGTGTACGAGAACATTATCGAA
TTGGAGAAGTGGCAGTCGAGCTTCTACAAGGACTGCTTTAAGGAGCTGAA
TGCCCGCAAGGAACTGTCCAAAATTGTGGAGAAATCGGAAAAGAAGGGTG
TCTACGGACTGACCAACAAGATGATCCTGCAGCGCGACCAAGAGGCGAAG
ATATTTGCCGAAAAGATGGACATCGCTTGCCGCGGCCTAGAAGTCATAGC
AACCGATTACGAAAAGGCTGTCAGCACTTTCCTAATGTCTCTCAACTCCA
GCGACGATCCGAATTTGCAGCTCTTTGGCACTCGGCTGGACTTCAACGAG
TACTACAAGAAGAGGGACACCAATTTGAGCAAACCCCTGACCTTCGAGCA
CATGCGCATGAGCAATGTGTTCGCCGTGAACAGTCGCTTCGTGATATGTA
CGCCGTCCACTCAGGAAGCAAGCTTTCTAGACCAT
BO11201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grip91-RA | 2754 | CG10988-PA | 1..2751 | 17..2767 | 13575 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grip91-RA | 3571 | CG10988-RA | 286..3036 | 17..2767 | 13575 | 99.6 | Plus |
| CG11151-RB | 1066 | CG11151-RB | 797..1066 | 2038..1769 | 1350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13742316..13743735 | 1550..131 | 7085 | 99.9 | Minus |
| X | 23542271 | X | 13737105..13737808 | 2767..2064 | 3400 | 98.9 | Minus |
| X | 23542271 | X | 13741655..13741976 | 2066..1745 | 1610 | 100 | Minus |
| X | 23542271 | X | 13742049..13742249 | 1743..1543 | 960 | 98.5 | Minus |
| X | 23542271 | X | 13744284..13744398 | 131..17 | 560 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:45:27 has no hits.
BO11201.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:04 Download gff for
BO11201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)dd4-RA | 258..3008 | 17..2769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:41 Download gff for
BO11201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)dd4-RA | 286..3036 | 17..2769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:54 Download gff for
BO11201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grip91-RA | 286..3036 | 17..2769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:54 Download gff for
BO11201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13737101..13737806 | 2066..2769 | 98 | <- | Minus |
| X | 13741656..13741977 | 1744..2065 | 99 | <- | Minus |
| X | 13742049..13742241 | 1551..1743 | 99 | <- | Minus |
| X | 13742316..13743734 | 132..1550 | 99 | <- | Minus |
| X | 13744284..13744398 | 17..131 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:41 Download gff for
BO11201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13631134..13631839 | 2066..2769 | 98 | <- | Minus |
| arm_X | 13635689..13636010 | 1744..2065 | 99 | <- | Minus |
| arm_X | 13636082..13636274 | 1551..1743 | 99 | <- | Minus |
| arm_X | 13636349..13637767 | 132..1550 | 99 | <- | Minus |
| arm_X | 13638317..13638431 | 17..131 | 99 | | Minus |
BO11201.3prime Sequence
793 bp (725 high quality bases) assembled on 2006-04-19
> BO11201.3prime
ATGGTCTAGAAAGCTTGCTTCCTGAGTGGACGGCGTACATATCACGAAGC
GACTGTTCACGGCGAACACATTGCTCATGCGCATGTGCTCGAAGGTCAGG
GGTTTGCTCAAATTGGTGTCCCTCTTCTTGTAGTACTCGTTGAAGTCCAG
CCGAGTGCCAAAGAGCTGCAAATTCGGATCGTCGCTGGAGTTGAGAGACA
TTAGGAAAGTGCTGACAGCCTTTTCGTAATCGGTTGCTATGACTTCTAGG
CCGCGGCAAGCGATGTCCATCTTTTCGGCAAATATCTTCGCCTCTTGGTC
GCGCTGCAGGATCATCTTGTTGGTCAGTCCGTAGACACCCTTCTTTTCCG
ATTTCTCCACAATTTTGGACAGTTCCTTGCGGGCATTCAGCTCCTTAAAG
CAGTCCTTGTAGAAGCTCGACTGCCACTTCTCCAATTCGATAATGTTCTC
GTACACCACCTCCAGCGAATGCTCCACACTCGCTTTGTTGCTGACAAAAC
AGCCCACCAAAATCGTTTGCAGAAACTTCTCGTGAGCTTCCAGGATTTCG
TCCAACGTGGTAGCCTTCTGCATCTTCTTCTGTAGCTCCACCCAGTTGCA
CTCGATGACCTCAAATAGCACATAGTACTGCATTTGGTGGATGAAGTGCA
TGATCTCGGAAGTGAAAAGGTTGAGGCGGTGTGACGCCTTGCCGATTTCG
GACTTCATTGTACGAAGGGCCTTTGCGTTGCCCATCTGCTCCTTCCAGAT
CTTCATCGAGAGCACAAACTCCATGTGCTTCATGCGCCAGAGT
BO11201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10988-PA | 2754 | l(1)dd4-RA | 1977..2751 | 793..19 | 3675 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grip91-RA | 3571 | CG10988-RA | 2262..3036 | 793..19 | 3755 | 99 | Minus |
| CG11151-RB | 1066 | CG11151-RB | 797..842 | 748..793 | 230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:59:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13737105..13737808 | 19..722 | 3400 | 98.9 | Plus |
| X | 23542271 | X | 13741655..13741728 | 720..793 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:59:53 has no hits.
BO11201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:48 Download gff for
BO11201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10988-PA | 1977..2754 | 18..793 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:24 Download gff for
BO11201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10988-PA | 1977..2754 | 18..793 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:51:40 Download gff for
BO11201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)dd4-RA | 2262..3040 | 13..793 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:24:26 Download gff for
BO11201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grip91-RA | 2262..3040 | 13..793 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:24:26 Download gff for
BO11201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13741656..13741728 | 721..793 | 100 | | Plus |
| X | 13737101..13737806 | 13..720 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:51:40 Download gff for
BO11201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13631134..13631839 | 13..720 | 98 | <- | Plus |
| arm_X | 13635689..13635761 | 721..793 | 100 | | Plus |
BO11201.5prime Sequence
833 bp (681 high quality bases) assembled on 2006-04-19
> BO11201.5prime
GAAGTTATCAGTCGACATGTCGCAGGACAGAATCGCCGGCATCGATGTGG
CAACCAATTCCACTGATATATCGAATATCATTAACGAGATGATCATCTGC
ATCAAGGGCAAGCAGATGCCCGAAGTTCACGAAAAAGCAATGGATCATTT
AAGCAAAATGATTGCCGCCAATAGTCGGGTCATTCGGGACTCAAATATGT
TGACTGAGCGCGAATGTGTCCAGAAGATAATGAAACTGCTGAGCGCCCGG
AATAAGAAGGAGGAGGGCAAAACTGTGTCGGATCACTTCAATGAGCTGTA
CAGGAAACTCACGTTGACCAAGTGCGATCCGCACATGAGGCACTCGCTAA
TGACCCATCTACTTACGATGACCGACAATTCGGATGCCGAAAAGGCAGTT
GCCAGCGAAGATCCACGTACTCAGTGCGATAATCTCACTCAGATTCTGGT
CAGTCGTCTTAACTCAATAAGTTCCTCCATAGCCAGTCTGAATGAGATGG
GAGTGGTCAACGGAAATGGAGTAGGAGCAGCAGCGGTAACAGGAGCAGCA
GCGGTAACAGGAGCAGCAGCGGTAACAGGAGCAGCAGCGGTAACAGGAGC
AGCAGCAAGCCACAGTTATGATGCCACACAGTCCAGCATCGGATTGAGAA
AACAGTCCTTGCCCAACTACCTGGATGCAACAAAAATGTTGCCCGAGTCT
CGACATGATATAGTGATGAGTGCCATTTACTCCTTCACCGGCGTTCAAGG
GAAGTATTTGAAGAAGGATGTGGTAACGGGCCGTTTCAAGCTGGATCAGC
AGAACATCAAGTTCCTGACCACCGGCCAAGCGG
BO11201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10988-PA | 2754 | l(1)dd4-RA | 1..817 | 17..833 | 4035 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grip91-RA | 3571 | CG10988-RA | 286..1102 | 17..833 | 4055 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13743033..13743735 | 833..131 | 3500 | 99.9 | Minus |
| X | 23542271 | X | 13744284..13744398 | 131..17 | 560 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:40:22 has no hits.
BO11201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:49 Download gff for
BO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10988-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:25 Download gff for
BO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10988-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:37:54 Download gff for
BO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)dd4-RA | 282..1102 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:27:01 Download gff for
BO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Grip91-RA | 282..1102 | 9..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:27:01 Download gff for
BO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13743033..13743734 | 132..833 | 99 | <- | Minus |
| X | 13744284..13744402 | 9..131 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:37:54 Download gff for
BO11201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13637066..13637767 | 132..833 | 99 | <- | Minus |
| arm_X | 13638317..13638435 | 9..131 | 95 | | Minus |
BO11201.pep Sequence
Translation from 16 to 2785
> BO11201.pep
MSQDRIAGIDVATNSTDISNIINEMIICIKGKQMPEVHEKAMDHLSKMIA
ANSRVIRDSNMLTERECVQKIMKLLSARNKKEEGKTVSDHFNELYRKLTL
TKCDPHMRHSLMTHLLTMTDNSDAEKAVASEDPRTQCDNLTQILVSRLNS
ISSSIASLNEMGVVNGNGVGAAAVTGAAAVTGAAAVTGAAAVTGAAASHS
YDATQSSIGLRKQSLPNYLDATKMLPESRHDIVMSAIYSFTGVQGKYLKK
DVVTGRFKLDQQNIKFLTTGQAGMLLRLSELGYYHDRVVKFSDVSTGFNA
IGSMGQALISKLKEELANFHGQVAMLHDEMQRFRQASVNGIANKGKKDSG
PDAGDEMTLFKLLAWYIKPLHRMQWLTKIADACQVKKGGDLASTVYDFLD
NGNDMVNKLVEDLLTAICGPLVRMISKWILEGGISDMHREFFVKSIKDVG
VDRLWHDKFRLRLPMLPKFVPMDMANKILMTGKSINFLREICEEQGMMKE
RDELMKVMESSASQIFSYTPDTSWHAAVETCYQQTSKHVLDIMVGPHKLL
DHLHGMRRYLLLGQGDFISILIENMKNELERPGLDIYANDLTSMLDSALR
CTNAQYDDPDILNHLDVIVQRPFNGDIGWNIISLQYIVHGPLAAMLESTM
PTYKVLFKPLWRMKHMEFVLSMKIWKEQMGNAKALRTMKSEIGKASHRLN
LFTSEIMHFIHQMQYYVLFEVIECNWVELQKKMQKATTLDEILEAHEKFL
QTILVGCFVSNKASVEHSLEVVYENIIELEKWQSSFYKDCFKELNARKEL
SKIVEKSEKKGVYGLTNKMILQRDQEAKIFAEKMDIACRGLEVIATDYEK
AVSTFLMSLNSSDDPNLQLFGTRLDFNEYYKKRDTNLSKPLTFEHMRMSN
VFAVNSRFVICTPSTQEASFLDH
BO11201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Grip91-PA | 917 | CG10988-PA | 1..917 | 1..917 | 4724 | 100 | Plus |
| Grip84-PF | 819 | CG3917-PF | 305..732 | 355..769 | 354 | 25.3 | Plus |
| Grip84-PC | 819 | CG3917-PC | 305..732 | 355..769 | 354 | 25.3 | Plus |
| Grip84-PD | 833 | CG3917-PD | 379..806 | 355..769 | 354 | 25.3 | Plus |
| Grip84-PB | 852 | CG3917-PB | 305..732 | 355..769 | 354 | 25.3 | Plus |
