Clone Sequence Records
BO11202.3prime Sequence
829 bp (737 high quality bases) assembled on 2006-04-19
> BO11202.3prime
ATGGTCTAGAAAGCTTGCCAGCGCTTCCGGATAAAAGTCCCGATAGGCGA
ATCCCTCAATGTACTCCGGCCGGTGGCAGGCGAACAGATGGTGGGGTAAC
TCCTTGCGGGCGTACTTCTCCAGTGCCTTGCGCGTATTTTCCTGGAGCAC
GGCCTCGTCAAATTTGACCCGCTGCACCGTGGTCTTCCGAAGGATGGTCT
GCACCAACTGCGACCACACGCAGCCGGACTCCTCTTCACCCAATCCGGAG
CCGTTTTCGGCAAGCTTTCCTTTTTGAATTTGTGTCGACTGCTTCTCTTC
CTGGCTCGGCTCCGGCTGCTGTGCAGGCGCCGCCATCTGGGCTTTGGTTT
GAGTGTAGACTGTGGACGCATCTGCGGCCTGAGAGTCGGTAGTGGCCTCT
TTCCTTTTGGGTGGCGGAATGTCCTGCATGAGCGTCTGCAATCGATCAAC
TGTCTCCGCCATTCGTTTCCGAAAGTCCACTATTCGACGGGCGTAGCTGA
AGAGGGCTCGCTCCTCCGCCAACTTTAATGGCCTTTTACGTGCTTCCTCA
CTTAGTTCTCCGTCTTCCAAAAGTGGGTGAATGCGAACACCGGCCTCCGA
AGTGCCACTGAGGTAGATTCGGATAGCAAATTCCTGCATGGCCGAAGTAT
TGACCATGGCTATGGCATAGGCATTACGTGCTTTTAGAATAACTTCTCTT
ATATGAGCCAACTGGGGCGAGGAGGTATTGGACACTCTTGTTTCGAGATC
TTGTAGATCCATATGCTCCAAGTGAGCCGACTTATCCAGGCTGTCCAACA
CCTCTGTCAAATGGCTAGGTATCCGGTCA
BO11202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3810-PC | 2949 | CG3810-RC | 2136..2946 | 829..19 | 4055 | 100 | Minus |
| CG3810-PB | 2949 | CG3810-RB | 2136..2946 | 829..19 | 4055 | 100 | Minus |
| CG3810-PA | 2949 | CG3810-RA | 2136..2946 | 829..19 | 4055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edem1-RD | 3935 | CG3810-RD | 2496..3306 | 829..19 | 4055 | 100 | Minus |
| Edem1-RA | 3670 | CG3810-RA | 2638..3448 | 829..19 | 4055 | 100 | Minus |
| Edem1-RB | 3221 | CG3810-RB | 2189..2999 | 829..19 | 4055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 14:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1904544..1905354 | 19..829 | 4055 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 14:05:05 has no hits.
BO11202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:51 Download gff for
BO11202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3810-PA | 2137..2949 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:26 Download gff for
BO11202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3810-PA | 2137..2949 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:40:03 Download gff for
BO11202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RB | 2190..3005 | 12..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:13 Download gff for
BO11202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RB | 2190..3005 | 12..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:13 Download gff for
BO11202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1904538..1905353 | 12..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:40:03 Download gff for
BO11202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1798571..1799386 | 12..828 | 99 | | Plus |
BO11202.5prime Sequence
862 bp (798 high quality bases) assembled on 2006-04-19
> BO11202.5prime
GAAGTTATCAGTCGACATGCAGCAAAAACCCCGAAACAACGGCTATCCGG
GCACCCTCATCTGCGCGGTCCTCCTCGTCCTGCTGTCCACCGGTGTCAGC
GGCCAGAAGCAGTATTCCAAGGCAAGAAAGTTGGAACTGAGGGAGGATGT
GCGGCGCATGTTCCAGCACGCCTACGATGGTTACCTGCGCCACGCCTCCA
ACTACGATGAACTGCGTCCGCTGACCTGCGATGGCCACGACACCTGGGGC
AGCTACTCCTTGACACTGATCGACGCTCTGGACACGCTGGCCACCATGGG
CAACTTCACGGAATTCCGCCGCGCGGCAAGACTGCTCGAGGAGAAGATGG
ATTTTGACAGGGACATCAACGTGTCCGTGTTCGAGACAAACATCCGCATC
GTGGGCGGGCTGCTGTCCGCGCATCTGCTCTCCAAGCGTGCTGGCGTAGA
GCTAGAGCCAGGATGGCCCTGCAAGGGACCTCTGCTGCGACTGGCGGAGG
ATGTGGCCCGACGATTATTGCCAGCCTTCGTCACGAACACGGGTATGCCT
TATGGCACGGTGAACCTGCGCTATGGCGTGCCCAAGGGCGAGACCTCTAT
AACCTGTACGGCGGGCGTGGGGACATTCCTCATCGAATTTGGTACCCTTA
GCCGGTTGACCGGGAAAACCATCTACGAGGATGTTGCTATGAAGGCGGTA
CATGCTCTATGGGCATATCGCTCGCCCATTGGACTTTTTGGCAATCACAT
CGACGTGCAGAGCGGTCGTTGGACCGCCCTCGACTCTGGTATCGGAGCAG
GAGTGGATTCCCTTTTTGAATACCTAGTTAAGGCATCTGTCCTGCTCAAT
CGCCCAAAACTC
BO11202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3810-PC | 2949 | CG3810-RC | 1..846 | 17..862 | 4205 | 99.8 | Plus |
| CG3810-PB | 2949 | CG3810-RB | 1..846 | 17..862 | 4205 | 99.8 | Plus |
| CG3810-PA | 2949 | CG3810-RA | 1..846 | 17..862 | 4205 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edem1-RD | 3935 | CG3810-RD | 361..1206 | 17..862 | 4215 | 99.9 | Plus |
| Edem1-RE | 3883 | CG3810-RE | 361..1206 | 17..862 | 4215 | 99.9 | Plus |
| Edem1-RA | 3670 | CG3810-RA | 503..1348 | 17..862 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1906714..1907436 | 862..140 | 3600 | 99.9 | Minus |
| X | 23542271 | X | 1907494..1907619 | 142..17 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:02:26 has no hits.
BO11202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:51 Download gff for
BO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3810-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:27 Download gff for
BO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3810-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:53:48 Download gff for
BO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 503..1348 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:24 Download gff for
BO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 503..1348 | 17..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:24 Download gff for
BO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1906714..1907434 | 142..862 | 99 | <- | Minus |
| X | 1907495..1907619 | 17..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:53:48 Download gff for
BO11202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1800747..1801467 | 142..862 | 99 | <- | Minus |
| arm_X | 1801528..1801652 | 17..141 | 100 | | Minus |
BO11202.complete Sequence
2980 bp assembled on 2008-01-16
GenBank Submission: FJ632025
> BO11202.complete
GAAGTTATCAGTCGACATGCAGCAAAAACCCCGAAACAACGGCTATCCGG
GCACCCTCATCTGCGCGGTCCTCCTCGTCCTGCTGTCCACCGGTGTCAGC
GGCCAGAAGCAGTATTCCAAGGCAAGAAAGTTGGAACTGAGGGAGGATGT
GCGGCGCATGTTCCAGCACGCCTACGATGGTTACCTGCGCCACGCCTCCA
ACTACGATGAACTGCGTCCGCTGACCTGCGATGGCCACGACACCTGGGGC
AGCTACTCCTTGACACTGATCGACGCTCTGGACACGCTGGCCACCATGGG
CAACTTCACGGAATTCCGCCGCGCGGCAAGACTGCTCGAGGAGAAGATGG
ATTTTGACAGGGACATCAACGTGTCCGTGTTCGAGACAAACATCCGCATC
GTGGGCGGGCTGCTGTCCGCGCATCTGCTCTCCAAGCGTGCTGGCGTAGA
GCTAGAGCCAGGATGGCCCTGCAAGGGACCTCTGCTGCGACTGGCGGAGG
ATGTGGCCCGACGATTATTGCCAGCCTTCGTCACGAACACGGGTATGCCT
TATGGCACGGTGAACCTGCGCTATGGCGTGCCCAAGGGCGAGACCTCTAT
AACCTGTACGGCGGGCGTGGGGACATTCCTCATCGAATTTGGTACCCTTA
GCCGGTTGACCGGGAAAACCATCTACGAGGATGTTGCTATGAAGGCGGTA
CATGCTCTATGGGCATATCGCTCGCCCATTGGACTTTTTGGCAATCACAT
CGACGTGCAGAGCGGTCGTTGGACCGCCCTCGACTCTGGTATCGGAGCAG
GAGTGGATTCCCTTTTTGAATACCTAGTTAAGGCATCTGTCCTGCTCAAT
CGCCCAGAACTCTTGGAGTTATTCCATGAGGCTCGCGCGGCCATTGATAA
GTACATGCGGAAGGAGGACTGGTACGTGTGGGTAGGCATGAACAAAGGCC
GCGTCACCCTTCCCGTCTTTCAGTCCCTGGAGGCGTTTTGGCCCGGCATC
CTGAGCATTATTGGCGACACGGAGCCGGCCTTGCGCACCATATCACGGTA
CATTGGGGTCTGGAAGAAGTACGGCTTTCTGCCAGAGTTTTATAACATTG
CTGCTGGAGAGGCATCGCCGAATCGGGAGGTGTACCCCCTGCGACCGGAG
CTAATCGAGTCAGCTATGTATCTCTATCGAGCCACAGGAAACGAGTATCT
TCTGGAGTTTGGTGAGCACATGCTGGAGACCTTGGAGTTCAGTGCCAAAA
CCAAATGCGGATATGCAACGATTCGCAATGTTGTCACCCACGAAAAGGAG
AATCGCATGGAGTCATTCTTCCTGGCGGAAACAAGCAAGTACCTTTATCT
GCTGTTTGACGAGGAAAACTTCCTGCACAACGATGGGTCCGGAGGCGAGC
TGCTGTCAACCGAGGATGATGTATGCGTGGTACAGGCCGGTGCGTACATC
TTCAACACAGAGGCTCATCCCATGGACATGTCAGCCCTCCACTGTTGCCA
CGCCCACAACGAGGACATCTACACCTCTCTGGATCTACAGCGGTTTAGTC
CACGGGCGATATTAGAGAGGAGCAAAAAGCGGCAGGTAGCTGTTCAGGAA
CAGTGGGTGCCGCAGTGTCACCCAGAGAACAACGAGTTCTTTAATAAAGA
GGATGAGAGTGTGCAGGCGCAGGACTCTGAAAAAGAGCAGGAACGCGAGC
AATCCGGCACAAGCACTACCATGGCCGTAGATATTGAGGTGTTCGACGAA
TTTCAACAGCCCGCCGGCGATCTGTTAGTAAGCAACTTCGAGCAGATACG
CGAGGAGCGGGAGCTAAACGAGAGCCTGCACAGAAACGTGGTGGCACGAA
ACCAGTTGACAGTCAGCGATTTGGATGAATTCTTTGCTCAGCGACGGGAG
AGTTTCGCAAGCGCCTCCGAGGCTCTTAACTATGTAAAGACCTTCATGGG
CAACTATACCATGGATGTAGCCTTTATACGGGGCTTGCAACTGTACGATA
CTAATATGAGTAGTGTATTGGGCACAGGCGCCCAGAAAGAGTATGAGTCT
CGAATGAGGACCCTTTGGCAGCTGTACGAACTGCAGCAGCAATATGTGGC
CAACATCCGAGTGATTCAAGGATTAGGTTTGCTAACCTTTCCGGCGGACG
GTGACCGGATACCTAGCCATTTGACAGAGGTGTTGGACAGCCTGGATAAG
TCGGCTCACTTGGAGCATATGGATCTACAAGATCTCGAAACAAGAGTGTC
CAATACCTCCTCGCCCCAGTTGGCTCATATAAGAGAAGTTATTCTAAAAG
CACGTAATGCCTATGCCATAGCCATGGTCAATACTTCGGCCATGCAGGAA
TTTGCTATCCGAATCTACCTCAGTGGCACTTCGGAGGCCGGTGTTCGCAT
TCACCCACTTTTGGAAGACGGAGAACTAAGTGAGGAAGCACGTAAAAGGC
CATTAAAGTTGGCGGAGGAGCGAGCCCTCTTCAGCTACGCCCGTCGAATA
GTGGACTTTCGGAAACGAATGGCGGAGACAGTTGATCGATTGCAGACGCT
CATGCAGGACATTCCGCCACCCAAAAGGAAAGAGGCCACTACCGACTCTC
AGGCCGCAGATGCGTCCACAGTCTACACTCAAACCAAAGCCCAGATGGCG
GCGCCTGCACAGCAGCCGGAGCCGAGCCAGGAAGAGAAGCAGTCGACACA
AATTCAAAAAGGAAAGCTTGCCGAAAACGGCTCCGGATTGGGTGAAGAGG
AGTCCGGCTGCGTGTGGTCGCAGTTGGTGCAGACCATCCTTCGGAAGACC
ACGGTGCAGCGGGTCAAATTTGACGAGGCCGTGCTCCAGGAAAATACGCG
CAAGGCACTGGAGAAGTACGCCCGCAAGGAGTTACCCCACCATCTGTTCG
CCTGCCACCGGCCGGAGTACATTGAGGGATTCGCCTATCGGGACTTTTAT
CCGGAAGCGCTGGCAAGCTTTCTAGACCAT
BO11202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edem1-RD | 2949 | CG3810-PD | 1..2946 | 17..2962 | 14730 | 100 | Plus |
| Edem1-RA | 2949 | CG3810-PA | 1..2946 | 17..2962 | 14730 | 100 | Plus |
| Edem1-RB | 2949 | CG3810-PB | 1..2946 | 17..2962 | 14730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edem1-RD | 3935 | CG3810-RD | 361..3306 | 17..2962 | 14730 | 100 | Plus |
| Edem1-RA | 3670 | CG3810-RA | 503..3448 | 17..2962 | 14730 | 100 | Plus |
| Edem1-RB | 3221 | CG3810-RB | 54..2999 | 17..2962 | 14730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1904544..1906236 | 2962..1270 | 8465 | 100 | Minus |
| X | 23542271 | X | 1906306..1907436 | 1270..140 | 5655 | 100 | Minus |
| X | 23542271 | X | 1907494..1907619 | 142..17 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:16:02 has no hits.
BO11202.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:33 Download gff for
BO11202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 1..2949 | 17..2966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:35 Download gff for
BO11202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 503..3448 | 17..2964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:13 Download gff for
BO11202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RB | 54..2999 | 17..2964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:33 Download gff for
BO11202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RA | 503..3454 | 17..2969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:25 Download gff for
BO11202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Edem1-RB | 54..2999 | 17..2964 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:25 Download gff for
BO11202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1904542..1906235 | 1271..2964 | 99 | <- | Minus |
| X | 1906306..1907434 | 142..1270 | 100 | <- | Minus |
| X | 1907495..1907619 | 17..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:13 Download gff for
BO11202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1798575..1800268 | 1271..2964 | 99 | <- | Minus |
| arm_X | 1800339..1801467 | 142..1270 | 100 | <- | Minus |
| arm_X | 1801528..1801652 | 17..141 | 100 | | Minus |
BO11202.pep Sequence
Translation from 16 to 2980
> BO11202.pep
MQQKPRNNGYPGTLICAVLLVLLSTGVSGQKQYSKARKLELREDVRRMFQ
HAYDGYLRHASNYDELRPLTCDGHDTWGSYSLTLIDALDTLATMGNFTEF
RRAARLLEEKMDFDRDINVSVFETNIRIVGGLLSAHLLSKRAGVELEPGW
PCKGPLLRLAEDVARRLLPAFVTNTGMPYGTVNLRYGVPKGETSITCTAG
VGTFLIEFGTLSRLTGKTIYEDVAMKAVHALWAYRSPIGLFGNHIDVQSG
RWTALDSGIGAGVDSLFEYLVKASVLLNRPELLELFHEARAAIDKYMRKE
DWYVWVGMNKGRVTLPVFQSLEAFWPGILSIIGDTEPALRTISRYIGVWK
KYGFLPEFYNIAAGEASPNREVYPLRPELIESAMYLYRATGNEYLLEFGE
HMLETLEFSAKTKCGYATIRNVVTHEKENRMESFFLAETSKYLYLLFDEE
NFLHNDGSGGELLSTEDDVCVVQAGAYIFNTEAHPMDMSALHCCHAHNED
IYTSLDLQRFSPRAILERSKKRQVAVQEQWVPQCHPENNEFFNKEDESVQ
AQDSEKEQEREQSGTSTTMAVDIEVFDEFQQPAGDLLVSNFEQIREEREL
NESLHRNVVARNQLTVSDLDEFFAQRRESFASASEALNYVKTFMGNYTMD
VAFIRGLQLYDTNMSSVLGTGAQKEYESRMRTLWQLYELQQQYVANIRVI
QGLGLLTFPADGDRIPSHLTEVLDSLDKSAHLEHMDLQDLETRVSNTSSP
QLAHIREVILKARNAYAIAMVNTSAMQEFAIRIYLSGTSEAGVRIHPLLE
DGELSEEARKRPLKLAEERALFSYARRIVDFRKRMAETVDRLQTLMQDIP
PPKRKEATTDSQAADASTVYTQTKAQMAAPAQQPEPSQEEKQSTQIQKGK
LAENGSGLGEEESGCVWSQLVQTILRKTTVQRVKFDEAVLQENTRKALEK
YARKELPHHLFACHRPEYIEGFAYRDFYPEALASFLDH
BO11202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Edem1-PD | 982 | CG3810-PD | 1..982 | 1..982 | 5082 | 100 | Plus |
| Edem1-PE | 1004 | CG3810-PE | 1..982 | 1..982 | 5082 | 100 | Plus |
| Edem1-PA | 982 | CG3810-PA | 1..982 | 1..982 | 5082 | 100 | Plus |
| Edem1-PB | 982 | CG3810-PB | 1..982 | 1..982 | 5082 | 100 | Plus |
| Edem1-PC | 982 | CG3810-PC | 1..982 | 1..982 | 5082 | 100 | Plus |
