Clone Sequence Records
BO11204.3prime Sequence
839 bp (754 high quality bases) assembled on 2006-04-19
> BO11204.3prime
ATGGTCTAGAAAGCTTGCGAACATGCCATCCGATCGGGCGACGGGTATGA
GCACGATGAGGAAGATGACGAAATTTCGCATGACCAGACGCCAGTCGCTG
GGCACCGCATACGGCAGCAGGATTTGGGTGAGGCGGTGCACCTCGTGCGA
TGCGCACACAAATATGAACGATGTAATGATCATGTTGAGCGTCGGGAAAC
CGGGCAGCAGCACCAGAACTCCATGCCGATCGGCGGCCAGCCAAATATGA
TACTGGCAGACGAACAGCTCCAACGAGATGCGGCCAAACCAGGCGAAGAA
CGCCGAGTATCGTGTACGTAGAATACCCGAAATGTTCCTGAGGACCACAT
AGCCCACAATCGGGATGAACAGTATATACGAATGGATCTCCTCACAGTTC
TGAACGTTGCGGCAAAGGAACGAGAACGAAGTGTACACCCCGACGCCCAG
CAGGGCCAGCAATGTGACTGATATTGATGTCCTTCGCGAAAACAGATTCC
CATGGTTGTTGTCATCGAACACATTGTACTTTTGGGCAATGTGAAAGCAG
GCGGCATATATCATGCCAAAGGCCACCGTATACCGGTCCAGTTTCCACTG
ATGCCACCACTCGTGCAGGTCGTCGTCAGTGGTCACAAACAACGCTTTCC
ACGGTCGCGTTACGAATATCCGTTCGAAGAATACCTCCGACATGAAGAGC
ACCGTGATGCCGCCCAGGCAACCAATGCACTTGCACACCAAATACAGATA
GTGCAGCGGATTGGCGTCCACCGATGCGGACGAATTTCGTGGCGGCAGTG
CGAGCCCAAAGTATACGATGCACCAGCCAAAGGATAGTA
BO11204.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2938-PB | 2589 | CG2938-RB | 1782..2586 | 823..19 | 3975 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2938-RD | 3775 | CG2938-RD | 1996..2816 | 839..19 | 4030 | 99.5 | Minus |
| CG2938-RC | 3759 | CG2938-RC | 2136..2956 | 839..19 | 4030 | 99.5 | Minus |
| CG2938-RB | 3619 | CG2938-RB | 1996..2816 | 839..19 | 4030 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3932959..3933779 | 19..839 | 4015 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:08:45 has no hits.
BO11204.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:54 Download gff for
BO11204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-PB | 1767..2589 | 16..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:32 Download gff for
BO11204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-PB | 1767..2589 | 16..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:33:35 Download gff for
BO11204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 1997..2823 | 12..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:32 Download gff for
BO11204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 1997..2823 | 12..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:32 Download gff for
BO11204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3932952..3933778 | 12..838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:33:35 Download gff for
BO11204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3826985..3827811 | 12..838 | 99 | | Plus |
BO11204.5prime Sequence
798 bp (742 high quality bases) assembled on 2006-04-19
> BO11204.5prime
GAAGTTATCAGTCGACATGGAGCTACGCGAACTGCGCGGTGGAAATGGTG
GAAGCGTAGGAGGCATTGGAGCAGCTACAACCGGAACCCCCGGAGTGTCA
GTGAATGGAGCCCCTAGTCCCGAACTAGGCGGCATCTGCATTGGAGGCGC
CGCCGGAGGACAGCGTATGCCCACCAGAGCGGATATATTTATGGAACAAC
TAAACGCCACCAATGCCAAGAAGGTGGCTTTGCTTCTGGTCCTCGGCTTC
ATCGTCTATCACGGCCTGCTCAACTGGAAATACGGCAGTGACTCCTGCCA
GTGGCTGCTGTCCAAGGGCCGATTTAAGGGCGACAACGAGTGGCAGCCGT
ACGGTTGCATGGTGCACAAGTACTCCCTCACTGACACAAGGCGCTGTTTG
CGTTACCTCGCCTTCTTCGACAACAAGAACAACTTTGTGTTCATTGGCGA
CGAGAGTATACGGCTGCTCTACGAACGATTTGTGGAGCAACTTCGCCTGC
CATTGGCCGCGGATGAAATGGCCGACGAGGAGGACAATAACGCCTCGGTG
ACTGATGGCTCAGCCCGTTTCGAGGACAAGAAGCTGCATATGCTGGCCCA
GTACATTCGGGCGGAGGAGGTGAGTCCGTCGCTTGTGGAGCAACTGTACC
GTCTGGAGTCTGAGAAGCAGCTGTCCTCTGTGTACGTTGTGGGCTTCACC
TATGCCGGCTTGCTCGCTGGCAACACCACAGACGATGTGCTGCGGCAATA
TGCCGCCAATCTTACATTGCTGGTGGCTCCGTTTCATCGCCTGGTGGC
BO11204.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2938-PB | 2589 | CG2938-RB | 1..782 | 17..798 | 3910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2938-RD | 3775 | CG2938-RD | 231..1012 | 17..798 | 3910 | 100 | Plus |
| CG2938-RC | 3759 | CG2938-RC | 371..1152 | 17..798 | 3910 | 100 | Plus |
| CG2938-RB | 3619 | CG2938-RB | 231..1012 | 17..798 | 3910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3934763..3935179 | 798..382 | 2085 | 100 | Minus |
| X | 23542271 | X | 3935729..3935997 | 285..17 | 1345 | 100 | Minus |
| X | 23542271 | X | 3935260..3935357 | 381..284 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 05:20:57 has no hits.
BO11204.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:55 Download gff for
BO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-PB | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:33 Download gff for
BO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-PB | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:51:04 Download gff for
BO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 231..1012 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:28:24 Download gff for
BO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 231..1012 | 17..798 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:28:24 Download gff for
BO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3934763..3935179 | 382..798 | 100 | <- | Minus |
| X | 3935260..3935356 | 285..381 | 100 | <- | Minus |
| X | 3935730..3935997 | 17..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:51:04 Download gff for
BO11204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3828796..3829212 | 382..798 | 100 | <- | Minus |
| arm_X | 3829293..3829389 | 285..381 | 100 | <- | Minus |
| arm_X | 3829763..3830030 | 17..284 | 100 | | Minus |
BO11204.complete Sequence
2620 bp assembled on 2010-03-09
GenBank Submission: KX795063
> BO11204.complete
GAAGTTATCAGTCGACATGGAGCTACGCGAACTGCGCGGTGGAAATGGTG
GAAGCGTAGGAGGCATTGGAGCAGCTACAACCGGAACCCCCGGAGTGTCA
GTGAATGGAGCCCCTAGTCCCGAACTAGGCGGCATCTGCATTGGAGGCGC
CGCCGGAGGACAGCGTATGCCCACCAGAGCGGATATATTTATGGAACAAC
TAAACGCCACCAATGCCAAGAAGGTGGCTTTGCTTCTGGTCCTCGGCTTC
ATCGTCTATCACGGCCTGCTCAACTGGAAATACGGCAGTGACTCCTGCCA
GTGGCTGCTGTCCAAGGGCCGATTTAAGGGCGACAACGAGTGGCAGCCGT
ACGGTTGCATGGTGCACAAGTACTCCCTCACTGACACAAGGCGCTGTTTG
CGTTACCTCGCCTTCTTCGACAACAAGAACAACTTTGTGTTCATTGGCGA
CGAGAGTATACGGCTGCTCTACGAACGATTTGTGGAGCAACTTCGCCTGC
CATTGGCCGCGGATGAAATGGCCGACGAGGAGGACAATAACGCCTCGGTG
ACTGATGGCTCAGCCCGTTTCGAGGACAAGAAGCTGCATATGCTGGCCCA
GTACATTCGGGCGGAGGAGGTGAGTCCGTCGCTTGTGGAGCAACTGTACC
GTCTGGAGTCTGAGAAGCAGCTGTCCTCTGTGTACGTTGTGGGCTTCACC
TATGCCGGCTTGCTCGCTGGCAACACCACAGACGATGTGCTGCGGCAATA
TGCCGCCAATCTTACATTGCTGGTGGCTCCGTTTCATCGCCTGGTGGCGC
AAACTTCGCGGGTCCTCTGGAAGCTAGCAGACCGCGTGGACGAGGAGAAA
TTGCCCGCGCACTGGAAGCTGCTCCAGAACGAGCAAATCGATCGATTAAA
CCATGTGGCCAGAGGAGTTTTTCGCTACACGGAGGCAAGTGTTTGGGAAT
CCGCCTGGCACATAGCCAATGGTTTGCTGGACAACGCCATCGATGGTCAT
CAGCTGTGCGCCCATGGCCAGCGACTGGAGGTTCAGCTACTGTGGAACAT
GTACTGCAATGACTACATGAACTACAATGATGGCACCTGCTGCAGCAGTT
CTGAGCCATACACCACGCTGCAAATAGTGGCATACGCCTTGTTTGGCGTC
TGTATGGCGCTTGTGTGTGGCATGTGTCTGCGCAGATGGGTGCTTCACCT
GCGGGGCCAGACTTTGTATGTGCCCCTGCAGCAGCAGCAATCTTACGACG
GGGGAAGAGCAGGTGGAGGATCACCGAGCAATGCCTTATCCGCTCTGATA
ACCGACTATGGCACTCCCATGGTGGCGCTATCACTGCTGGGCCTAATTTT
GGCCTATTTCTACCTCTGCGATCGCACAAACTTCTTTATGAAGGAGAACA
AATACTATTCTGAGTTTAGCTTCTGGATACCAGTGGGCTATGTCTTCGCA
CTCGGATTGTTTTTTACGGAAGATTCACGGTTCACTAAGGTGCTCAATCG
CGATCAAACGGATGAACTGCGTGGCTGGATACTGCTGGTGGTGCTTATAT
ATTACATGACCGGAGCACAGCGAGTGCTGCCCATTCACATGCACATTAAG
CTGTTGATCTCAGGATACTTTTTCCTTACCGGATACACGCACTTCACGCA
TATGTGGCAAACGGGTGGCAGTGGCTCCCTATTCGTACGCTTTTTCCAGG
CCATGTTCCGGGCAAACTTTCTCAGTGTACTGCTGTGCTTCTGCATGAAC
CGGCCGTATCAGTTCTACTATTTTGTGCCACTACTATCCTTTTGGCTGTG
CATCGTATACTTTGTGCTCGCACTGCCGCCACGAATTTCGTCCGCATCGG
TGGACGCCAATCCGCTGCACTATCTGTATTTGGTGTGCAAGTGCATTGGT
TGCCTGGGCGGCATCACGGTGCTCTTCATGTCGGAGGTATTCTTCGAACG
GATATTCGTAACGCGACCGTGGAAAGCGTTGTTTGTGACCACTGACGACG
ACCTGCACGAGTGGTGGCATCAGTGGAAACTGGACCGGTATACGGTGGCC
TTTGGCATGATATATGCCGCCTGCTTTCACATTGCCCAAAAGTACAATGT
GTTCGATGACAACAACCATGGGAATCTGTTTTCGCGAAGGACATCAATAT
CAGTCACATTGCTGGCCCTGCTGGGCGTCGGGGTGTACACTTCGTTCTCG
TTCCTTTGCCGCAACGTTCAGAACTGTGAGGAGATCCATTCGTATATACT
GTTCATCCCGATTGTGGGCTATGTGGTCCTCAGGAACATTTCGGGTATTC
TACGTACACGATACTCGGCGTTCTTCGCCTGGTTTGGCCGCATCTCGTTG
GAGCTGTTCGTCTGCCAGTATCATATTTGGCTGGCCGCCGATCGGCATGG
AGTTCTGGTGCTGCTGCCCGGTTTCCCGACGCTCAACATGATCATTACAT
CGTTCATATTTGTGTGCGCATCGCACGAGGTGCACCGCCTCACCCAAATC
CTGCTGCCGTATGCGGTGCCCAGCGACTGGCGTCTGGTCATGCGAAATTT
CGTCATCTTCCTCATCGTGCTCATACCCGTCGCCCGATCGGATGGCATGT
TCGCAAGCTTTCTAGACCAT
BO11204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2938-RD | 2589 | CG2938-PD | 1..2586 | 17..2602 | 12930 | 100 | Plus |
| CG2938-RC | 2589 | CG2938-PC | 1..2586 | 17..2602 | 12930 | 100 | Plus |
| CG2938-RB | 2589 | CG2938-PB | 1..2586 | 17..2602 | 12930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2938-RD | 3775 | CG2938-RD | 231..2816 | 17..2602 | 12930 | 100 | Plus |
| CG2938-RC | 3759 | CG2938-RC | 371..2956 | 17..2602 | 12930 | 100 | Plus |
| CG2938-RB | 3619 | CG2938-RB | 231..2816 | 17..2602 | 12930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3932959..3935179 | 2602..382 | 11105 | 100 | Minus |
| X | 23542271 | X | 3935729..3935997 | 285..17 | 1345 | 100 | Minus |
| X | 23542271 | X | 3935260..3935357 | 381..284 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:27:29 has no hits.
BO11204.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-09 16:10:47 Download gff for
BO11204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 255..2840 | 17..2604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:56 Download gff for
BO11204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 231..2816 | 17..2604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:21 Download gff for
BO11204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 231..2816 | 17..2604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:21 Download gff for
BO11204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3932956..3935179 | 382..2604 | 99 | <- | Minus |
| X | 3935260..3935356 | 285..381 | 100 | <- | Minus |
| X | 3935730..3935997 | 17..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:56 Download gff for
BO11204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3826989..3829212 | 382..2604 | 99 | <- | Minus |
| arm_X | 3829293..3829389 | 285..381 | 100 | <- | Minus |
| arm_X | 3829763..3830030 | 17..284 | 100 | | Minus |
BO11204.pep Sequence
Translation from 16 to 2620
> BO11204.pep
MELRELRGGNGGSVGGIGAATTGTPGVSVNGAPSPELGGICIGGAAGGQR
MPTRADIFMEQLNATNAKKVALLLVLGFIVYHGLLNWKYGSDSCQWLLSK
GRFKGDNEWQPYGCMVHKYSLTDTRRCLRYLAFFDNKNNFVFIGDESIRL
LYERFVEQLRLPLAADEMADEEDNNASVTDGSARFEDKKLHMLAQYIRAE
EVSPSLVEQLYRLESEKQLSSVYVVGFTYAGLLAGNTTDDVLRQYAANLT
LLVAPFHRLVAQTSRVLWKLADRVDEEKLPAHWKLLQNEQIDRLNHVARG
VFRYTEASVWESAWHIANGLLDNAIDGHQLCAHGQRLEVQLLWNMYCNDY
MNYNDGTCCSSSEPYTTLQIVAYALFGVCMALVCGMCLRRWVLHLRGQTL
YVPLQQQQSYDGGRAGGGSPSNALSALITDYGTPMVALSLLGLILAYFYL
CDRTNFFMKENKYYSEFSFWIPVGYVFALGLFFTEDSRFTKVLNRDQTDE
LRGWILLVVLIYYMTGAQRVLPIHMHIKLLISGYFFLTGYTHFTHMWQTG
GSGSLFVRFFQAMFRANFLSVLLCFCMNRPYQFYYFVPLLSFWLCIVYFV
LALPPRISSASVDANPLHYLYLVCKCIGCLGGITVLFMSEVFFERIFVTR
PWKALFVTTDDDLHEWWHQWKLDRYTVAFGMIYAACFHIAQKYNVFDDNN
HGNLFSRRTSISVTLLALLGVGVYTSFSFLCRNVQNCEEIHSYILFIPIV
GYVVLRNISGILRTRYSAFFAWFGRISLELFVCQYHIWLAADRHGVLVLL
PGFPTLNMIITSFIFVCASHEVHRLTQILLPYAVPSDWRLVMRNFVIFLI
VLIPVARSDGMFASFLDH
BO11204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2938-PD | 862 | CG2938-PD | 1..862 | 1..862 | 4600 | 100 | Plus |
| CG2938-PC | 862 | CG2938-PC | 1..862 | 1..862 | 4600 | 100 | Plus |
| CG2938-PB | 862 | CG2938-PB | 1..862 | 1..862 | 4600 | 100 | Plus |
