Clone BO11206 Report

Search the DGRC for BO11206

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptBub1-RA
Protein status:BO11206.pep:
Sequenced Size:3331

Clone Sequence Records

BO11206.3prime Sequence

813 bp (780 high quality bases) assembled on 2006-04-19

> BO11206.3prime
ATGGTCTAGAAAGCTTGCTCGTCGATGCAGGATGTTGGATAGGGTGCGTA
TCTGCTTCTGCAGCTCGGAGTCCATGCGGTACGCCTCCTCCTCGAAGATG
AGACGCATCTCATGCAGCGCTGGCAGTTTGTCCGCCTGCATGTTGAGCAG
ATCCCCGAAGAACTTGGTCCACACATGCTTTTTGAGGTAACGCGGCAGCT
TTTGTCGTATTTCCCAGCTGGAGCCCTTCTTTTGCGGCTGCATATAGTCA
CCGAAGAGCATCACATGAACGGTCGCCGCGATGCAGAAGAGATCCGTTTC
GTAGGACCAGCTGCGTCCCTCCTGCATCTCGATGCAGGTGAAGCCATCCG
TTTGCACCACCTTCCGGAACTTGGTCTTCTCACCGTCCGGGAACAGGGTC
ATATCGATAGCACAGCCGAAGTCAATCAAACGTAGCGATGGCAACGGACT
GTCCACATTGGGCACACGCATTAGCAGGAAGTTGTCCGGTTTAATGTCCG
CATGGATGATGTGCTGGCGATGCAGGTGGTCCACGATATTGCAGATCTGT
GCGGAGAAGTGCATCACCAGCGATTCGTGCATTACTTTGGTGGTTGCCTG
GCGGATCTTGTTGTTGATGTCCAGCAGCGAACCGAACGGTGAGAACTCGG
TGGCTATTAGACTAGCGTTTGGGGCGATGATCGCCGTGGAAATGTCCATA
ACGCCAGGCAACACCTCTGGCTCCTTGATGCGTTTCAGCACCTGATCACA
TATGTATATCTCCCAGGTGTTTGGGGGCTTCTGATACTTGAGCGCCACTA
CATTGCCGGTCCG

BO11206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14030-PA 3300 CG14030-RA 2503..3297 813..19 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 22:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Bub1-RB 4091 CG14030-RB 2810..3604 813..19 3975 100 Minus
Bub1-RC 3998 CG14030-RC 2998..3792 813..19 3975 100 Minus
Bub1-RA 3810 CG14030-RA 2810..3604 813..19 3975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 22:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5282072..5282796 743..19 3625 100 Minus
2L 23513712 2L 5281918..5281991 813..740 370 100 Minus
Blast to na_te.dros performed on 2015-02-03 22:16:26 has no hits.

BO11206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:58 Download gff for BO11206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14030-PA 2503..3300 15..813 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:38 Download gff for BO11206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14030-PA 2503..3300 15..813 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 06:22:31 Download gff for BO11206.3prime
Subject Subject Range Query Range Percent Splice Strand
Bub1-RA 2810..3607 15..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 00:05:15 Download gff for BO11206.3prime
Subject Subject Range Query Range Percent Splice Strand
Bub1-RA 2810..3607 15..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 00:05:15 Download gff for BO11206.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5281918..5281989 742..813 100 -> Minus
2L 5282074..5282799 15..741 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 06:22:31 Download gff for BO11206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5281918..5281989 742..813 100 -> Minus
arm_2L 5282074..5282799 15..741 99   Minus

BO11206.5prime Sequence

935 bp (768 high quality bases) assembled on 2006-04-19

> BO11206.5prime
GAAGTTATCAGTCGACATGGCCATGCACTCGTACATGCGCCAGGGATCGG
GTTCCGGAGGAGGAGCAGGAGCAGTCGCAGCTGGAGCACCGCCGCTGGCC
AGCCCGGACGAGATGCACGGCTTCCTGAACGACAAGCAGGCTTGGGAGCA
CGCCATATCCCTGTACCAGGGTCCTGATCCACTCGATCATTGGTACAACT
ACATCTGCTGGTACGAGAATCACGCGCAAAGCGATCCGGAGCTAAAGTAC
CGCGAAACTCTGGAGCGCTGCCTGACGGTGTATGAGCACAATGACTACTA
TCGCCAGGATGTCCGTTTGGTGCGGCTGTGGCTGAAGTACATAGCCATGC
AAACGGATCCACTCCATTTCTACCAGGTGCTTTTTCAGCGAGGAACTGGT
CGCCAGGTGGCCGCCTTCTACATTGGATGGGCTGCCTATTACGAGTCTCG
CGAGGAGTATAAGGATGCGGAGGCGGTGTTTAACTTGGCCTTCCAGGAGA
AGGCGCAGAGCACTTCCGAGCTGCAGCACGCCCACACCAAGTTCGCCTAT
GCCAGGTCTCTTTTTTACCAGCGGCAACAGCAGCAACAACAGCAACAACA
GCAGCACCAGCAACATCCCCCGCAGGATGCACTGCAGCAACTCACGAACT
ATGCACAGCAGCAGATGCCACAGAGCTATAATCAACACCGTCCCCAGCCA
TATCAGCAGAATGTCTATCAGCAATATCATCCGCAGGCGCAGGCACATCA
AGCCCCACAGCCTCATCAGCCGGCGCCACAACAGCAACTGCCGCCAGAAC
ACAGGTCCCCTATCAAACCACTACCAGGAGCGGCCGCGCTATGAACCACA
TCCTGCAACTCAGTCCCCAACAGCAATACCACCATCCCCAGTCCAGCAAC
AATCGCATTATGCTCCTGTGGCAAAGTCCATTATG

BO11206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14030-PA 3300 CG14030-RA 1..785 17..801 3925 100 Plus
CG14030-PA 3300 CG14030-RA 805..915 819..929 505 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
Bub1-RB 4091 CG14030-RB 304..1229 13..935 4495 99.2 Plus
Bub1-RC 3998 CG14030-RC 492..1417 13..935 4495 99.2 Plus
Bub1-RA 3810 CG14030-RA 304..1229 13..935 4495 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5279356..5280268 13..923 4420 99.5 Plus
Blast to na_te.dros performed 2015-02-11 09:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2778..2988 569..788 234 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2533 678..907 165 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1545..1584 755..794 110 75 Plus

BO11206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:00:59 Download gff for BO11206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14030-PA 1..922 17..935 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:39 Download gff for BO11206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14030-PA 1..922 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:57:06 Download gff for BO11206.5prime
Subject Subject Range Query Range Percent Splice Strand
Bub1-RA 304..1229 13..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:09:14 Download gff for BO11206.5prime
Subject Subject Range Query Range Percent Splice Strand
Bub1-RA 304..1229 13..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:09:14 Download gff for BO11206.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5279356..5280271 13..926 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:57:06 Download gff for BO11206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5279356..5280271 13..926 99   Plus

BO11206.complete Sequence

3331 bp assembled on 2008-01-16

GenBank Submission: KX799305

> BO11206.complete
GAAGTTATCAGTCGACATGGCCATGCACTCGTACATGCGCCAGGGATCGG
GTTCCGGAGGAGGAGCAGGAGCAGTCGCAGCTGGAGCACCGCCGCTGGCC
AGCCCGGACGAGATGCACGGCTTCCTGAACGACAAGCAGGCTTGGGAGCA
CGCCATATCCCTGTACCAGGGTCCTGATCCACTCGATCATTGGTACAACT
ACATCTGCTGGTACGAGAATCACGCGCAAAGCGATCCGGAGCTAAAGTAC
CGCGAAACTCTGGAGCGCTGCCTGACGGTGTATGAGCACAATGACTACTA
TCGCCAGGATGTCCGTTTGGTGCGGCTGTGGCTGAAGTACATAGCCATGC
AAACGGATCCACTCCATTTCTACCAGGTGCTTTTTCAGCGAGGAACTGGT
CGCCAGGTGGCCGCCTTCTACATTGGATGGGCTGCCTATTACGAGTCTCG
CGAGGAGTATAAGGATGCGGAGGCGGTGTTTAACTTGGCCTTCCAGGAGA
AGGCGCAGAGCACTTCCGAGCTGCAGCACGCCCACACCAAGTTCGCCTAT
GCCAGGTCTCTTTTTTACCAGCGGCAACAGCAGCAACAACAGCAACAACA
GCAGCACCAGCAACATCCCCCGCAGGATGCACTGCAGCAACTCACGAACT
ATGCACAGCAGCAGATGCCACAGAGCTATAATCAACACCGTCCCCAGCCA
TATCAGCAGAATGTCTATCAGCAATATCATCCGCAGGCGCAGGCACATCA
AGCCCCACAGCCTCATCAGCCGGCGCCACAACAGCAACTGCCGCCAGAAC
AACAGGTCCCCTATCAGACACACTACCAGGAGCGGCCGCGCTATGAACCA
CATCCTGCAACTCAGTCCCCAACAGCAATACCACCATCCCAAGTCCAGCA
ACAATCGCATTATGCTCCTGTGGCAGAGTCCCATTATGCACCAGCCCAAC
AGTCACAGTTGCCGCCGCAACAAACTACAGTACCGCAGTTGCACGCACAG
CAGCCGCAGCAGCAACAAAACGGCAACGGCAATCCACCTCCTCAACAAAG
TCCTCCGGTGACAAATGAAGTGGCTGGCCTACGCTTGCCGCGCAATTTCC
ACGCCTACGGGCGCAACAACCATGAGACATGGAAGCCGGCTCTAACGCTT
GAAGAGCCTGATGATCCCTCGCGCGTGTGCCACTATGCCAAGCAGTTGGT
ATATCCACCAGGAGCAGGCGTCGAGTACAGTCCCGAAGAGATACTAGCCC
GCAAGTTTAAGCAGTTAATGGATCAAAAAGCCAAGCCATCGGAGCCGCCA
GAACAAGAACAGCAAACTCTTTATGATTCCTACGAAACTGAGAAATCTTA
CTATATGACTGCTGTGGATGGAGCTCTTTACGGGCAGAACACCAGCAGTG
GTCAGGAGAATACAGGTGAGGAAGATGAGGACAATGACGCCGAGGAGGGA
GAAGAGGAGGAGGATGGTGGTGAAGAGAACGAGGAAGATGACTCTGATGA
AGAGGAGGAAGACGATGAAGAGGAAGAGGAGCATAGCGGACCGTACACAA
ATGGCGTGCAGTTCAGTGCGCAAACCACTTTCGAGCAAGAAAATCGATCG
ATTAAGATCAAGTTCAGGAAGGAGCCCAGCAGCACCTACAGTGCCTATAC
CATAGAGAATGTTTACCAGCAACAACAGCAGCAGCAGCAGGAGCAGCATC
AAATAATCCATCAGCCTCCGCAGGCAGTACATCATCCTTCGCCGGACCCG
GCACCTGCTTCTCCGATTCCCATCCAGCGTCAACGCAACGGAAGCCACCA
CCACTTCCATCCCTACATGCTGGGCCAGACCTCGACGCCGAAGAGCGAGG
CGAATGGCTATCGCAGGGCACGCACCAAAGTTAAGCGCAGCAAGTTCCAG
CCGGATCTCTGCAGCAACAGCAACTCGGCATCCTCGGTGGCTGATGTGGC
CTCGAGTAGTGTGCTCGCCGGAGCACCTGGCACATTTAATGACAATGCAA
ACTTTTCGTTCTCCAGTGCCACAGCTTTGGATAACTCAAATAGCTCGCTG
GCCTTGGCTGTTGATAGACTTAACTTCCGCGACACATCGCAACAGCAGAT
CCTCCATCCGGTCAATAAGACCTTACAAATTCACAACAACAACAATAACA
CCAGCAACAACAATAATGGCACTAGCACCATGGCCGATTTCTCCACATTT
CAAGAGAACTCGTACTTCGCCACTCAGCACGACACGGAGGCCCAGGAGCG
TCGGCTATCGAAGGCCGTTGAAACGATAGCCCGCCACATGGACAAGGAGG
CCATCGATCCGTTCAACAGCGAACTGTGCCGCGCTTTTCTCGCCAAGCTA
GATTTTCCGGGTAATCACGATGCCCATGCCAGTTACAAGATTGTCCAAAC
GCCACTGCCAAAAATATCCAACACTCGCACGCTGAACGTCCTGGAAGGCG
TTACCTTTAGCATCGACAAGGAGGTGGGTCGCGGCTCATATGGCTCGGTT
TATAAAGCCACTGATTCTCGGACCGGCAATGTAGTGGCGCTCAAGTATCA
GAAGCCCCCAAACACCTGGGAGATATACATATGTGATCAGGTGCTGAAAC
GCATCAAGGAGCCAGAGGTGTTGCCTGGCGTTATGGACATTTCCACGGCG
ATCATCGCCCCAAACGCTAGTCTAATAGCCACCGAGTTCTCACCGTTCGG
TTCGCTGCTGGACATCAACAACAAGATCCGCCAGGCAACCACCAAAGTAA
TGCACGAATCGCTGGTGATGCACTTCTCCGCACAGATCTGCAATATCGTG
GACCACCTGCATCGCCAGCACATCATCCATGCGGACATTAAACCGGACAA
CTTCCTGCTAATGCGTGTGCCCAATGTGGACAGTCCGTTGCCATCGCTAC
GTTTGATTGACTTCGGCTGTGCTATCGATATGACCCTGTTCCCGGACGGT
GAGAAGACCAAGTTCCGGAAGGTGGTGCAAACGGATGGCTTCACCTGCAT
CGAGATGCAGGAGGGACGCAGCTGGTCCTACGAAACGGATCTCTTCTGCA
TCGCGGCGACCGTTCATGTGATGCTCTTCGGTGACTATATGCAGCCGCAA
AAGAAGGGCTCCAGCTGGGAAATACGACAAAAGCTGCCGCGTTACCTCAA
AAAGCATGTGTGGACCAAGTTCTTCGGGGATCTGCTCAACATGCAGGCGG
ACAAACTGCCAGCGCTGCATGAGATGCGTCTCATCTTCGAGGAGGAGGCG
TACCGCATGGACTCCGAGCTGCAGAAGCAGATACGCACCCTATCCAACAT
CCTGCATCGACGAGCAAGCTTTCTAGACCAT

BO11206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Bub1-RB 3300 CG14030-PB 1..3297 17..3313 16485 100 Plus
Bub1-RC 3300 CG14030-PC 1..3297 17..3313 16485 100 Plus
Bub1-RA 3300 CG14030-PA 1..3297 17..3313 16485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Bub1-RB 4091 CG14030-RB 304..3604 13..3313 16490 100 Plus
Bub1-RC 3998 CG14030-RC 492..3792 13..3313 16490 100 Plus
Bub1-RA 3810 CG14030-RA 304..3604 13..3313 16490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5280326..5281991 927..2592 8330 100 Plus
2L 23513712 2L 5279356..5280271 13..928 4565 99.9 Plus
2L 23513712 2L 5282072..5282796 2589..3313 3625 100 Plus
Blast to na_te.dros performed 2014-11-27 07:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2659 671..1017 305 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2778..3036 569..845 235 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2503 857..1047 206 61 Plus
roo 9092 roo DM_ROO 9092bp 1069..1165 938..1032 137 62.9 Plus

BO11206.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:36 Download gff for BO11206.complete
Subject Subject Range Query Range Percent Splice Strand
Bub1-RA 1..3300 17..3317 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:41 Download gff for BO11206.complete
Subject Subject Range Query Range Percent Splice Strand
Bub1-RA 310..3606 17..3315 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:54 Download gff for BO11206.complete
Subject Subject Range Query Range Percent Splice Strand
Bub1-RA 308..3604 17..3315 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:36 Download gff for BO11206.complete
Subject Subject Range Query Range Percent Splice Strand
Bub1-RA 306..3609 13..3317 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:08 Download gff for BO11206.complete
Subject Subject Range Query Range Percent Splice Strand
Bub1-RA 308..3604 17..3315 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:08 Download gff for BO11206.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5279360..5280271 17..928 100 -> Plus
2L 5280328..5281989 929..2590 100 -> Plus
2L 5282074..5282796 2591..3315 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:54 Download gff for BO11206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5279360..5280271 17..928 100 -> Plus
arm_2L 5280328..5281989 929..2590 100 -> Plus
arm_2L 5282074..5282796 2591..3315 99   Plus

BO11206.pep Sequence

Translation from 16 to 3331

> BO11206.pep
MAMHSYMRQGSGSGGGAGAVAAGAPPLASPDEMHGFLNDKQAWEHAISLY
QGPDPLDHWYNYICWYENHAQSDPELKYRETLERCLTVYEHNDYYRQDVR
LVRLWLKYIAMQTDPLHFYQVLFQRGTGRQVAAFYIGWAAYYESREEYKD
AEAVFNLAFQEKAQSTSELQHAHTKFAYARSLFYQRQQQQQQQQQQHQQH
PPQDALQQLTNYAQQQMPQSYNQHRPQPYQQNVYQQYHPQAQAHQAPQPH
QPAPQQQLPPEQQVPYQTHYQERPRYEPHPATQSPTAIPPSQVQQQSHYA
PVAESHYAPAQQSQLPPQQTTVPQLHAQQPQQQQNGNGNPPPQQSPPVTN
EVAGLRLPRNFHAYGRNNHETWKPALTLEEPDDPSRVCHYAKQLVYPPGA
GVEYSPEEILARKFKQLMDQKAKPSEPPEQEQQTLYDSYETEKSYYMTAV
DGALYGQNTSSGQENTGEEDEDNDAEEGEEEEDGGEENEEDDSDEEEEDD
EEEEEHSGPYTNGVQFSAQTTFEQENRSIKIKFRKEPSSTYSAYTIENVY
QQQQQQQQEQHQIIHQPPQAVHHPSPDPAPASPIPIQRQRNGSHHHFHPY
MLGQTSTPKSEANGYRRARTKVKRSKFQPDLCSNSNSASSVADVASSSVL
AGAPGTFNDNANFSFSSATALDNSNSSLALAVDRLNFRDTSQQQILHPVN
KTLQIHNNNNNTSNNNNGTSTMADFSTFQENSYFATQHDTEAQERRLSKA
VETIARHMDKEAIDPFNSELCRAFLAKLDFPGNHDAHASYKIVQTPLPKI
SNTRTLNVLEGVTFSIDKEVGRGSYGSVYKATDSRTGNVVALKYQKPPNT
WEIYICDQVLKRIKEPEVLPGVMDISTAIIAPNASLIATEFSPFGSLLDI
NNKIRQATTKVMHESLVMHFSAQICNIVDHLHRQHIIHADIKPDNFLLMR
VPNVDSPLPSLRLIDFGCAIDMTLFPDGEKTKFRKVVQTDGFTCIEMQEG
RSWSYETDLFCIAATVHVMLFGDYMQPQKKGSSWEIRQKLPRYLKKHVWT
KFFGDLLNMQADKLPALHEMRLIFEEEAYRMDSELQKQIRTLSNILHRRA
SFLDH

BO11206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Bub1-PB 1099 CG14030-PB 1..1099 1..1099 5876 100 Plus
Bub1-PC 1099 CG14030-PC 1..1099 1..1099 5876 100 Plus
Bub1-PA 1099 CG14030-PA 1..1099 1..1099 5876 100 Plus
BubR1-PA 1460 CG7838-PA 1127..1460 764..1098 585 37.3 Plus
BubR1-PA 1460 CG7838-PA 27..216 29..215 285 32.6 Plus
kis-PF 5191 CG3696-PF 310..908 184..732 231 22.8 Plus