Clone Sequence Records
BO11207.3prime Sequence
842 bp (736 high quality bases) assembled on 2006-04-19
> BO11207.3prime
ATGGTCTAGAAAGCTTGCACAATCGGTATCGTACCAGGCAGCCAGGTTGT
TGTTGTCATTGGGTGGCGTCGGCATGGCGTCCAAGTCAAAGTTCAATGCA
CCGGCATCAATCTCGCCAACGTCCATGTCCATGGAATAGGGCGAAGTTGG
TGCGCCGCTAGGCGGAATGGCGCCGATGTTACCACCGCCGCCGCTAGCTC
CGCCTACAGCTCCACCATTGCCGGGAGCACCGCCAGCACCGCCGCCGCCC
ACTGGGCTGCTGATCTCCAGACCCTGCATCGAATCTATTGGTAGAGTATC
ATATCCTTGCTGATGGAATGCGCGACCTCCGTGTGAACTGTGCACGCTGG
GCGGACCTTGTCCGTACAGGCCCTCATATGCTTCTTCTGGTCCAAGCATA
TCCTGTAGATCGGGACCCATGCCCAGGTCGGCATTGGCCCATATGTTGTT
GTCCTCGCGCAGCAGCGAGTTGGTCAGCTCTATGGATAGCCGCTTCTTGT
AATCCTGCGGCTTGTCCTCACTCATGCGAAAGAGAACAGCGGCGGCGTAT
GTGGCCACGCCTTCATTGCGCGAGTGCAGGAGATCGGTCAGCGGCCCAGT
GGCGCCCTCCTGCTCGATAATCTCGGCGCCCTCCTTGTCAGCGGCGAGCT
CACAAAGAACGCCAGCAGCCACGCGCTGTATGTTCTCGATTTCGTTGAAC
AGCAATCGTACAAAGATCGGTATTACCGACTGCTGGCGAATGAGTGCCCG
GTTGTGAGACTCGCGGGCCAGGATATGTAGCGCCCCCACCGTGCCCTCAA
CAATCTCCTCCATGCAACCGCCGTCAGCGTATGCGGACGGCT
BO11207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11579-PA | 2532 | arm-RA | 1706..2529 | 842..19 | 4045 | 99.6 | Minus |
| CG11579-PD | 2532 | arm-RD | 1706..2529 | 842..19 | 4045 | 99.6 | Minus |
| CG11579-PB | 2532 | arm-RB | 1706..2529 | 842..19 | 4045 | 99.6 | Minus |
| CG11579-PE | 2532 | arm-RE | 1706..2529 | 842..19 | 4045 | 99.6 | Minus |
| CG11579-PC | 2166 | arm-RC | 1706..2151 | 842..397 | 2155 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-RF | 3211 | CG11579-RF | 1956..2779 | 842..19 | 4075 | 99.6 | Minus |
| arm-RE | 3116 | CG11579-RE | 1861..2684 | 842..19 | 4075 | 99.6 | Minus |
| arm-RB | 3220 | CG11579-RB | 1965..2788 | 842..19 | 4075 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1891833..1892121 | 19..307 | 1445 | 100 | Plus |
| X | 23542271 | X | 1894507..1894782 | 402..677 | 1380 | 100 | Plus |
| X | 23542271 | X | 1894841..1895007 | 676..842 | 790 | 98.2 | Plus |
| X | 23542271 | X | 1893402..1893503 | 305..406 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:57:43 has no hits.
BO11207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:00 Download gff for
BO11207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-PA | 1706..2532 | 18..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:41 Download gff for
BO11207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11579-PE | 1706..2532 | 18..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:58:58 Download gff for
BO11207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 1965..2797 | 13..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:22 Download gff for
BO11207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 1965..2797 | 13..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:22 Download gff for
BO11207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1894508..1894780 | 403..675 | 100 | <- | Plus |
| X | 1894841..1895007 | 676..842 | 98 | | Plus |
| X | 1891824..1892119 | 13..305 | 98 | <- | Plus |
| X | 1893403..1893499 | 306..402 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:58:58 Download gff for
BO11207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1785857..1786152 | 13..305 | 98 | <- | Plus |
| arm_X | 1787436..1787532 | 306..402 | 100 | <- | Plus |
| arm_X | 1788541..1788813 | 403..675 | 100 | <- | Plus |
| arm_X | 1788874..1789040 | 676..842 | 98 | | Plus |
BO11207.5prime Sequence
874 bp (747 high quality bases) assembled on 2006-04-19
> BO11207.5prime
GAAGTTATCAGTCGACATGAGTTACATGCCAGCCCAGAATCGAACCATGT
CGCATAATAATCAATACAATCCACCTGATCTGCCGCCGATGGTATCCGCC
AAGGAGCAGACCCTCATGTGGCAGCAGAATTCGTACTTGGGCGACTCCGG
CATCCACTCGGGTGCCGTGACCCAGGTTCCATCGCTGTCTGGCAAGGAGG
ACGAGGAGATGGAGGGAGATCCACTTATGTTCGACCTGGACACCGGTTTC
CCGCAGAATTTCACACAAGACCAAGTGGACGATATGAACCAGCAACTGAG
CCAGACACGCTCCCAACGTGTACGTGCTGCCATGTTTCCGGAAACCCTGG
AGGAGGGCATTGAGATTCCCTCCACCCAGTTTGATCCCCAACAGCCGACG
GCAGTGCAACGTCTTTCGGAACCGTCACAAATGCTAAAGCACGCGGTGGT
CAATCTGATCAACTACCAGGACGACGCTGAGCTGGCAACCAGGGCCATAC
CCGAGTTGATCAAGCTGCTGAACGATGAGGATCAGGTGGTAGTTTCCCAG
GCCGCCATGATGGTCCACCAGCTGTCTAAGAAGGAGGCCTCGCGACATGC
CATTATGAACAGCCCTCAGATGGTAGCCGCTTTGGTGCGTGCCATCTCTA
ACAGCAACGATCTGGAGAGCACCAAGGCAGCGGTAGGAACACTGCACAAC
TTATCACACCATCGCCAGGGTCTGCTGGCCATCTTCAAGAGTGGCGGCAT
CCCGGCACTCGTCAAGTTGCTCTCCTCGCCAGTGGAGAGTGTGCTGTTCT
ATGCAATTACCACTCTGCACAATTTGCTGCTCCACCAGGATGGCTCTAAG
ATGGGTGTGCGCCTGGCCGGCGGG
BO11207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11579-PC | 2166 | arm-RC | 1..858 | 17..874 | 4265 | 99.8 | Plus |
| CG11579-PA | 2532 | arm-RA | 1..858 | 17..874 | 4265 | 99.8 | Plus |
| CG11579-PD | 2532 | arm-RD | 1..858 | 17..874 | 4265 | 99.8 | Plus |
| CG11579-PB | 2532 | arm-RB | 1..858 | 17..874 | 4265 | 99.8 | Plus |
| CG11579-PE | 2532 | arm-RE | 1..858 | 17..874 | 4265 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-RF | 3211 | CG11579-RF | 251..1108 | 17..874 | 4275 | 99.9 | Plus |
| arm-RE | 3116 | CG11579-RE | 156..1013 | 17..874 | 4275 | 99.9 | Plus |
| arm-RB | 3220 | CG11579-RB | 260..1117 | 17..874 | 4275 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1895927..1896753 | 874..48 | 4120 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:17:01 has no hits.
BO11207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:01 Download gff for
BO11207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:42 Download gff for
BO11207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11579-PE | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:08:22 Download gff for
BO11207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 251..1117 | 7..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:21 Download gff for
BO11207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 251..1117 | 7..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:21 Download gff for
BO11207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1895927..1896753 | 48..874 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:08:22 Download gff for
BO11207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1789960..1790786 | 48..874 | 99 | <- | Minus |
BO11207.complete Sequence
2563 bp assembled on 2010-04-09
GenBank Submission: KX795001
> BO11207.complete
GAAGTTATCAGTCGACATGAGTTACATGCCAGCCCAGAATCGAACCATGT
CGCATAATAATCAATACAATCCACCTGATCTGCCGCCGATGGTATCCGCC
AAGGAGCAGACCCTCATGTGGCAGCAGAATTCGTACTTGGGCGACTCCGG
CATCCACTCGGGTGCCGTGACCCAGGTTCCATCGCTGTCTGGCAAGGAGG
ACGAGGAGATGGAGGGAGATCCACTTATGTTCGACCTGGACACCGGTTTC
CCGCAGAATTTCACACAAGACCAAGTGGACGATATGAACCAGCAACTGAG
CCAGACACGCTCCCAACGTGTACGTGCTGCCATGTTTCCGGAAACCCTGG
AGGAGGGCATTGAGATTCCCTCCACCCAGTTTGATCCCCAACAGCCGACG
GCAGTGCAACGTCTTTCGGAACCGTCACAAATGCTAAAGCACGCGGTGGT
CAATCTGATCAACTACCAGGACGACGCTGAGCTGGCAACCAGGGCCATAC
CCGAGTTGATCAAGCTGCTGAACGATGAGGATCAGGTGGTAGTTTCCCAG
GCCGCCATGATGGTCCACCAGCTGTCTAAGAAGGAGGCCTCGCGACATGC
CATTATGAACAGCCCTCAGATGGTAGCCGCTTTGGTGCGTGCCATCTCTA
ACAGCAACGATCTGGAGAGCACCAAGGCAGCGGTAGGAACACTGCACAAC
TTATCACACCATCGCCAGGGTCTGCTGGCCATCTTCAAGAGTGGCGGCAT
CCCGGCACTCGTCAAGTTGCTCTCCTCGCCAGTGGAGAGTGTGCTGTTCT
ATGCAATTACCACTCTGCACAATTTGCTGCTCCACCAGGATGGCTCTAAG
ATGGCTGTGCGCCTGGCCGGCGGGCTTCAGAAGATGGTTACTCTGCTGCA
ACGAAACAACGTTAAGTTTCTGGCTATCGTCACAGATTGCTTGCAAATTC
TGGCCTATGGTAACCAGGAGAGCAAGTTAATAATTCTTGCCTCCGGAGGG
CCCAACGAACTCGTGCGCATTATGCGCTCCTACGACTACGAGAAGCTTCT
GTGGACCACTTCGCGGGTACTGAAAGTGCTCTCCGTTTGCTCCAGCAACA
AGCCGGCCATCGTGGATGCCGGTGGAATGCAGGCGCTGGCTATGCACTTG
GGTAACATGTCACCGCGCCTTGTGCAAAACTGTTTGTGGACGCTCCGCAA
TCTTTCGGATGCAGCCACTAAGGTGGAGGGCCTTGAAGCTTTGCTCCAAT
CTCTCGTCCAGGTTCTGGGCTCGACCGATGTCAACGTGGTCACCTGTGCC
GCCGGTATCCTTTCAAATCTGACGTGCAACAATCAGCGCAACAAGGCCAC
CGTTTGTCAGGTGGGCGGTGTGGACGCCCTCGTCCGTACTATTATCAATG
CTGGAGATCGCGAAGAGATTACCGAGCCGGCTGTATGTGCCCTGCGTCAC
TTGACCTCGCGTCATGTGGACTCTGAGTTGGCCCAGAATGCCGTACGCTT
AAACTACGGACTATCGGTGATTGTAAAGCTATTGCATCCACCATCACGCT
GGCCCTTGATCAAGGCCGTCATTGGACTCATACGCAATTTGGCCCTCTGT
CCGGCCAATCACGCCCCGTTGCGGGAGCACGGGGCCATCCACCATCTGGT
GCGACTGCTTATGCGCGCCTTCCAAGACACAGAGAGGCAACGTTCCTCGA
TAGCCACCACTGGTTCACAGCAGCCGTCCGCATACGCTGACGGCGTTCGC
ATGGAGGAGATTGTCGAGGGCACGGTGGGGGCGCTACATATCCTGGCCCG
CGAGTCTCACAACCGGGCACTCATTCGCCAGCAGTCGGTAATACCGATCT
TTGTACGATTGCTGTTCAACGAAATCGAGAACATACAGCGCGTGGCTGCT
GGCGTTCTTTGTGAGCTCGCCGCTGACAAGGAGGGCGCCGAGATTATCGA
GCAGGAGGGCGCCACTGGGCCGCTGACCGATCTCCTGCACTCGCGCAATG
AAGGCGTGGCCACATACGCCGCCGCTGTTCTCTTTCGCATGAGTGAGGAC
AAGCCGCAGGATTACAAGAAGCGGCTATCCATAGAGCTGACCAACTCGCT
GCTGCGCGAGGACAACAACATATGGGCCAATGCCGACCTGGGCATGGGTC
CCGATCTACAGGATATGCTTGGACCAGAAGAAGCATATGAGGGCCTGTAC
GGACAAGGTCCGCCCAGCGTGCACAGTTCACACGGAGGTCGCGCATTCCA
TCAGCAAGGATATGATACTCTACCAATAGATTCGATGCAGGGTCTGGAGA
TCAGCAGCCCAGTGGGCGGCGGCGGTGCTGGCGGTGCTCCCGGCAATGGT
GGAGCTGTAGGCGGAGCTAGCGGCGGCGGTGGTAACATCGGCGCCATTCC
GCCTAGCGGCGCACCAACTTCGCCCTATTCCATGGACATGGACGTTGGCG
AGATTGATGCCGGTGCATTGAACTTTGACTTGGACGCCATGCCGACGCCA
CCCAATGACAACAACAACCTGGCTGCCTGGTACGATACCGATTGTGCAAG
CTTTCTAGACCAT
BO11207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-RF | 2532 | CG11579-PF | 1..2529 | 17..2545 | 12645 | 100 | Plus |
| arm-RE | 2532 | CG11579-PE | 1..2529 | 17..2545 | 12645 | 100 | Plus |
| arm-RB | 2532 | CG11579-PB | 1..2529 | 17..2545 | 12645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-RF | 3211 | CG11579-RF | 251..2779 | 17..2545 | 12645 | 100 | Plus |
| arm-RE | 3116 | CG11579-RE | 156..2684 | 17..2545 | 12645 | 100 | Plus |
| arm-RB | 3220 | CG11579-RB | 260..2788 | 17..2545 | 12645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1895114..1896753 | 1687..48 | 8200 | 100 | Minus |
| X | 23542271 | X | 1891833..1892121 | 2545..2257 | 1445 | 100 | Minus |
| X | 23542271 | X | 1894507..1894782 | 2162..1887 | 1380 | 100 | Minus |
| X | 23542271 | X | 1894841..1895042 | 1888..1687 | 1010 | 100 | Minus |
| X | 23542271 | X | 1893402..1893503 | 2259..2158 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:43:21 has no hits.
BO11207.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:29:12 Download gff for
BO11207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 260..2788 | 17..2547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:52 Download gff for
BO11207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 260..2788 | 17..2547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:40 Download gff for
BO11207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 260..2788 | 17..2547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:40 Download gff for
BO11207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1891831..1892119 | 2259..2547 | 99 | <- | Minus |
| X | 1893403..1893499 | 2162..2258 | 100 | <- | Minus |
| X | 1894508..1894780 | 1889..2161 | 100 | <- | Minus |
| X | 1894841..1895041 | 1688..1888 | 100 | <- | Minus |
| X | 1895114..1896753 | 48..1687 | 100 | <- | Minus |
| X | 1898980..1899010 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:52 Download gff for
BO11207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1785864..1786152 | 2259..2547 | 99 | <- | Minus |
| arm_X | 1787436..1787532 | 2162..2258 | 100 | <- | Minus |
| arm_X | 1788541..1788813 | 1889..2161 | 100 | <- | Minus |
| arm_X | 1788874..1789074 | 1688..1888 | 100 | <- | Minus |
| arm_X | 1789147..1790786 | 48..1687 | 100 | <- | Minus |
| arm_X | 1793013..1793043 | 17..47 | 100 | | Minus |
BO11207.pep Sequence
Translation from 16 to 2563
> BO11207.pep
MSYMPAQNRTMSHNNQYNPPDLPPMVSAKEQTLMWQQNSYLGDSGIHSGA
VTQVPSLSGKEDEEMEGDPLMFDLDTGFPQNFTQDQVDDMNQQLSQTRSQ
RVRAAMFPETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINY
QDDAELATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSP
QMVAALVRAISNSNDLESTKAAVGTLHNLSHHRQGLLAIFKSGGIPALVK
LLSSPVESVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVTLLQRNNVK
FLAIVTDCLQILAYGNQESKLIILASGGPNELVRIMRSYDYEKLLWTTSR
VLKVLSVCSSNKPAIVDAGGMQALAMHLGNMSPRLVQNCLWTLRNLSDAA
TKVEGLEALLQSLVQVLGSTDVNVVTCAAGILSNLTCNNQRNKATVCQVG
GVDALVRTIINAGDREEITEPAVCALRHLTSRHVDSELAQNAVRLNYGLS
VIVKLLHPPSRWPLIKAVIGLIRNLALCPANHAPLREHGAIHHLVRLLMR
AFQDTERQRSSIATTGSQQPSAYADGVRMEEIVEGTVGALHILARESHNR
ALIRQQSVIPIFVRLLFNEIENIQRVAAGVLCELAADKEGAEIIEQEGAT
GPLTDLLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSIELTNSLLREDN
NIWANADLGMGPDLQDMLGPEEAYEGLYGQGPPSVHSSHGGRAFHQQGYD
TLPIDSMQGLEISSPVGGGGAGGAPGNGGAVGGASGGGGNIGAIPPSGAP
TSPYSMDMDVGEIDAGALNFDLDAMPTPPNDNNNLAAWYDTDCASFLDH
BO11207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-PF | 843 | CG11579-PF | 1..843 | 1..843 | 4318 | 100 | Plus |
| arm-PE | 843 | CG11579-PE | 1..843 | 1..843 | 4318 | 100 | Plus |
| arm-PB | 843 | CG11579-PB | 1..843 | 1..843 | 4318 | 100 | Plus |
| arm-PD | 843 | CG11579-PD | 1..843 | 1..843 | 4318 | 100 | Plus |
| arm-PA | 843 | CG11579-PA | 1..843 | 1..843 | 4318 | 100 | Plus |
