Clone Sequence Records
BO11209.3prime Sequence
833 bp (737 high quality bases) assembled on 2006-04-19
> BO11209.3prime
ATGGTCTAGAAAGCTTGCCTCTATAGAGGGAAAGACAGTGCGATGGTCTT
TCCATTCGGTTTCGCTGATTGCCACTAGCTCGTCGAAAGCCTGTTTGGCC
AGCCAGTGGAAGCATGGACTCTTCCATTCGCGCGCAATCGCCTGCTGATC
CTTGACGTCGTCCTCGGCGGTGGACTTGGAATTGGTAATGGCCTTGTACT
TGGCCCACAGGAAGACCATGCTGCGCAACTTGTAAACCCACAGGTCATTG
GGTATGCCGCGAATAATGTCCTGTATTTCCACCATGTTCAACTCCGTAAG
GTTATCCAGGAAGGTGCGGTTCATCAACGTAAAGATCGTCTTCATTGTGT
CGTACGGCACGTCGGCATTCTTCTCGAGACCAAAGTGTGCCGACTTTATG
ATAGCGTAAACCACCTGCTCTGTGGTTAGCTTGGGCAGATTGGGTAGGAA
GCAATGCTCTAGATTCAAGTTCCCACACTCCAACAGTTGCTGGTCGATCT
CCTCGCCAACATTCTTGTAGTCCTTCCACCAGTTGCCCCAATCATTATAT
TTCTTCGATTCGTTAAGCGGTGCCCAATCGGACCGTATGCGTTTCCTGTT
GCGCTTTGCAATCTTGCGAGCCGACTTGGCGTCGTCGGCCACCGATTCGT
CTTCCGAATCTTCGTTGAGCACTACGGCCGCCTCTACGAAGTCCTCCTCG
GTGGCGTCCTGGTTTGTACTGTAATTGAAGGTTTGTTCGAAGAAGGTCAA
GGCATATGAGTCCGCCTCCGGCTGTGGGAGCTTCTTCGGCTGATCGTTGA
GATAGGGAATCTTGAATCCGCCAATAAGGAAAC
BO11209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5787-PA | 2853 | CG5787-RA | 2036..2850 | 833..19 | 4075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5787-RB | 3637 | CG5787-RB | 2359..3173 | 833..19 | 4075 | 100 | Minus |
| CG5787-RA | 3478 | CG5787-RA | 2200..3014 | 833..19 | 4075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12709374..12710135 | 72..833 | 3810 | 100 | Plus |
| 2L | 23513712 | 2L | 12709256..12709310 | 19..73 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:21:37 has no hits.
BO11209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:02 Download gff for
BO11209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-PA | 2036..2853 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:43 Download gff for
BO11209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-PA | 2036..2853 | 15..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:44:55 Download gff for
BO11209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 2200..3019 | 14..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:55:43 Download gff for
BO11209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 2200..3019 | 14..833 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:55:43 Download gff for
BO11209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12709251..12709309 | 14..72 | 96 | <- | Plus |
| 2L | 12709375..12710135 | 73..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:44:55 Download gff for
BO11209.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12709251..12709309 | 14..72 | 96 | <- | Plus |
| arm_2L | 12709375..12710135 | 73..833 | 100 | | Plus |
BO11209.5prime Sequence
833 bp (684 high quality bases) assembled on 2006-04-19
> BO11209.5prime
GAAGTTATCAGTCGACATGGACTACCGCCAAATGAAGAACGACGCTTACG
GCATTGGCCAGCGGCGCGGAATGGGGAGCTCCAGCGGCGTTGGTGGTGGT
GGAGGAGGCGGCGGCGGCGGGATGTATTCCTCAAACTACGGCGGAGGCGG
TAGCGGCGCCAACTTCGGCGGAGGCGGCAATACCAGTGGCAGAGGAGGCT
ACGGTGGCACTTTCGGTGGCGGAGGCTACGGCGTCAACCGGAATACCAGC
CCAGATGGTGGCAACTTCAGTCGCGGCGGTGGCAACTACAGCAACAACAG
CAACAGTGGCGGCAACAACAGCTACCCACGTTCCGGAGACGGAGATCGGA
GCGGTTTCAATCCGAGCAGCAACCAGCGTTTCGGCGATAATTTCCAGGAC
AAATTTCGTGGCGGGCCGTCCTCCAATTTCGGCCAAGCGAACAGGGGAGC
ATCCAATCAGAGCAACGTAGCCCGCTTGCTGGAGGTGGAGAACCGTATGG
ACTGCAATCCAGATGTCAACTATCGAGGTCCCCAGCCGCAGGGAAGCGGC
GATAGGTTTTTCAACGATGAACCCAGAAATCAGGGATCATTCGGTAATTT
CGTTCCCAACGATGGAGTGCCATTTGGCGGCAACAATGCTCCCTCTTTTG
GTGGAAACAATGGACCCGCTTATGGGGGCAATAGTGGACCTTCCTTTGGA
GGAAGCGATGTCCCTTTTGGTGGAAACAGTGGTCCTTCGTTTGGAGGAAA
CATCAACGCAACTTCAACAATGACAATTTCCCAAACAGAGGTCCTAACTA
TGATGACCAGCGTTCCGGTTTTCATGATTCCTA
BO11209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5787-PA | 2853 | CG5787-RA | 1..736 | 17..752 | 3680 | 100 | Plus |
| CG5787-PA | 2853 | CG5787-RA | 737..818 | 752..833 | 360 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5787-RB | 3637 | CG5787-RB | 324..1141 | 17..833 | 4035 | 99.6 | Plus |
| CG5787-RA | 3478 | CG5787-RA | 165..982 | 17..833 | 4035 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12711489..12712306 | 833..17 | 4010 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-11 09:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6924 | 125..323 | 181 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6901 | 152..324 | 151 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2427 | 235..325 | 149 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6854 | 261..373 | 149 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1154 | 268..325 | 146 | 72.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6779 | 282..322 | 142 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6845 | 261..322 | 139 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2431 | 225..320 | 138 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2423 | 282..375 | 137 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1578 | 283..325 | 134 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2609..2649 | 282..322 | 133 | 80.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 97..191 | 228..322 | 131 | 66.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9127..9221 | 228..322 | 131 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6827 | 235..325 | 130 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2406 | 223..325 | 129 | 61.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1547..1595 | 281..329 | 128 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6758 | 289..322 | 125 | 85.3 | Plus |
| blood | 7410 | blood BLOOD 7410bp | 2973..3020 | 215..265 | 122 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2358 | 283..322 | 119 | 77.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1130 | 244..322 | 119 | 68.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1106 | 289..322 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2630 | 130..324 | 113 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2349 | 283..322 | 110 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1609 | 283..334 | 109 | 69.8 | Plus |
BO11209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:03 Download gff for
BO11209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-PA | 1..817 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:45 Download gff for
BO11209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-PA | 1..817 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:56:46 Download gff for
BO11209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 163..981 | 14..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:32 Download gff for
BO11209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 163..981 | 14..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:32 Download gff for
BO11209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12711490..12712308 | 14..832 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:56:46 Download gff for
BO11209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12711490..12712308 | 14..832 | 99 | | Minus |
BO11209.complete Sequence
2884 bp assembled on 2008-01-16
GenBank Submission: FJ632027
> BO11209.complete
GAAGTTATCAGTCGACATGGACTACCGCCAAATGAAGAACGACGCTTACG
GCATTGGCCAGCGGCGCGGAATGGGGAGCTCCAGCGGCGTTGGTGGTGGT
GGAGGAGGCGGCGGCGGCGGGATGTATTCCTCAAACTACGGCGGAGGCGG
TAGCGGCGCCAACTTCGGCGGAGGCGGCAATACCAGTGGCAGAGGAGGCT
ACGGTGGCACTTTCGGTGGCGGAGGCTACGGCGTCAACCGGAATACCAGC
CCAGATGGTGGCAACTTCAGTCGCGGCGGTGGCAACTACAGCAACAACAG
CAACAGTGGCGGCAACAACAGCTACCCACGTTCCGGAGACGGAGATCGGA
GCGGTTTCAATCCGAGCAGCAACCAGCGTTTCGGCGATAATTTCCAGGAC
AAATTTCGTGGCGGGCCGTCCTCCAATTTCGGCCAAGCGAACAGGGGAGC
ATCCAATCAGAGCAACGTAGCCCGCTTGCTGGAGGTGGAGAACCGTATGG
ACTGCAATCCAGATGTCAACTATCGAGGTCCCCAGCCGCAGGGAAGCGGC
GATAGGTTTTTCAACGATGAACCCAGAAATCAGGGATCATTCGGTAATTT
CGTTCCCAACGATGGAGTGCCATTTGGCGGCAACAATGCTCCCTCTTTTG
GTGGAAACAATGGACCCGCTTATGGGGGCAATAGTGGACCTTCCTTTGGA
GGAAGCGATGTCCCTTTTGGTGGAAACAGTGGTCCTTCGTTTGGAGGAAA
CAATCAACGCAACTTCAACAATGACAATTTCCCAAACAGAGGTCCTAACT
ATGATGACCAGCGTTCCGGTTTCAATGATTCCTACGGACGCAGTGGAAAT
CACGGCAACTTTGGCCAGAACTCTGGAAACTTTGGGGACAACAATAGGGA
TATAGGAAACTTTAACAACCGCGGACCGGCTGTCGGAGGATCCGGAGGCC
CAGGCTTTAACCCGAACTCTGGTGGCAACTTTGGCAGCAATAATTCCGGA
GGCGGCTTTAGCAACAACTTTGGCCAGAACTCTGGAAACTTTGGGGACAA
CAATAGGGATATTGGAAACTTTAACAACCGCGGACCGGCTGTCGGAGGAT
CCGGAGGCCCAGGTTTTAAACCGAACTCTGGTGGTAACTTTGGCAACAAT
AATTCCGGAGGCGGCTTTAGCAACAACATTAGTCGCACCTTCCAAGACTC
TCGCAACAACTGGAACAAATCACAATCATCATCGTTCCAGAACTCTGGCT
ATCAATCGAACAGTGGTGGTGGTGGCGGAGGTGGAGGAAGAAGCGGCGGT
GGTGGAGGAGGCGGTGCCGGCGGCGGAGGAGGAGTAGGTTCCGGTGGCTC
TGGATGGGAAGCTGGTCAGCGCGCCTTCAACTCGAAGCGCAATCAGCTGC
AGAAGATGAATCTGAACAACAGCGGATCTGTTCGAAAGCCAGCTCCACAG
CCAGCCGCTAAGGCGGTCCAGAACTTGCGCAACAATCCTCAGAAGGCTGA
AATCGTCAAAAGCGCAGGTGCGCCCACTCTGCGCAACAACAAGACCGCCA
ACCTGCGTCCGGGCAATGCGACTGGAGTACAGAAAAAGCTGCCCGTTGCA
GCACCAAATCAGTATAAAGTCAATAACGTAACACCCAATTCGAAAACGGT
CTCGGTTACCAACAAGAAGCCACCGGTGGCCGCACCAGCCGTGAAGACCG
GACCGCAGGCAAACAGGACAGGACCACAGGGATTAAGAACTGGACCACAG
GGATTAAGAGCTGGACCACAGGGATTGAGATCTGGACCACAGGGCTTGAG
AACTGGACAACAGGGCTTGAAAACTGGACCACAGCTGCAGAAGTCGGGAC
CACTGGCACCTAGAACTGGCCAGCAGGCAGTGAAAGGTGGACCACAAGGA
GGCAAACCAGCAGGAGTGCCCAGTAGGCCGCCAAACGCTCCTGGATTCCC
CGTCCAAATTAGTCAGAAGCGTGTTGCCCCACCTCCACCGCTGGAAACGG
AGGCTGCCTCCAAGTCGGTCAAGAAATGGCGACGCGTGGCACGCAAGCGC
GGTTTCCTTATTGGCGGATTCAAGATTCCCTATCTCAACGATCAGCCGAA
GAAGCTCCCACAGCCGGAGGCGGACTCATATGCCTTGACCTTCTTCGAAC
AAACCTTCAATTACAGTACAAACCAGGACGCCACCGAGGAGGACTTCGTA
GAGGCGGCCGTAGTGCTCAACGAAGATTCGGAAGACGAATCGGTGGCCGA
CGACGCCAAGTCGGCTCGCAAGATTGCAAAGCGCAACAGGAAACGCATAC
GGTCCGATTGGGCACCGCTTAACGAATCGAAGAAATATAATGATTGGGGC
AACTGGTGGAAGGACTACAAGAATGTTGGCGAGGAGATCGACCAGCAACT
GTTGGAGTGTGGGAACTTGAATCTAGAGCATTGCTTCCTACCCAATCTGC
CCAAGCTAACCACAGAGCAGGTGGTTTACGCTATCATAAAGTCGGCACAC
TTTGGTCTCGAGAAGAATGCCGACGTGCCGTACGACACAATGAAGACGAT
CTTTACGTTGATGAACCGCACCTTCCTGGATAACCTTACGGAGTTGAACA
TGGTGGAAATACAGGACATTATTCGCGGCATACCCAATGACCTGTGGGTT
TACAAGTTGCGCAGCATGGTCTTCCTGTGGGCCAAGTACAAGGCCATTAC
CAATTCCAAGTCCACCGCCGAGGACGACGTCAAGGATCAGCAGGCGATTG
CGCGCGAATGGAAGAGTCCATGCTTCCACTGGCTGGCCAAACAGGCTTTC
GACGAGCTAGTGGCAATCAGCGAAACCGAATGGAAAGACCATCGCACTGT
CTTTCCCTCTATAGAGGCAAGCTTTCTAGACCAT
BO11209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5787-RB | 2853 | CG5787-PB | 1..2850 | 17..2866 | 14250 | 100 | Plus |
| CG5787-RA | 2853 | CG5787-PA | 1..2850 | 17..2866 | 14250 | 100 | Plus |
| CG5787-RB | 2853 | CG5787-PB | 840..1002 | 1015..1177 | 740 | 96.9 | Plus |
| CG5787-RB | 2853 | CG5787-PB | 999..1161 | 856..1018 | 740 | 96.9 | Plus |
| CG5787-RA | 2853 | CG5787-PA | 840..1002 | 1015..1177 | 740 | 96.9 | Plus |
| CG5787-RA | 2853 | CG5787-PA | 999..1161 | 856..1018 | 740 | 96.9 | Plus |
| CG5787-RB | 2853 | CG5787-PB | 1705..1776 | 1763..1834 | 225 | 87.5 | Plus |
| CG5787-RB | 2853 | CG5787-PB | 1747..1818 | 1721..1792 | 225 | 87.5 | Plus |
| CG5787-RA | 2853 | CG5787-PA | 1705..1776 | 1763..1834 | 225 | 87.5 | Plus |
| CG5787-RA | 2853 | CG5787-PA | 1747..1818 | 1721..1792 | 225 | 87.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5787-RB | 3637 | CG5787-RB | 324..3173 | 17..2866 | 14250 | 100 | Plus |
| CG5787-RA | 3478 | CG5787-RA | 165..3014 | 17..2866 | 14250 | 100 | Plus |
| CG5787-RB | 3637 | CG5787-RB | 1163..1325 | 1015..1177 | 740 | 96.9 | Plus |
| CG5787-RB | 3637 | CG5787-RB | 1322..1484 | 856..1018 | 740 | 96.9 | Plus |
| CG5787-RA | 3478 | CG5787-RA | 1163..1325 | 856..1018 | 740 | 96.9 | Plus |
| CG5787-RA | 3478 | CG5787-RA | 1004..1166 | 1015..1177 | 740 | 96.9 | Plus |
| CG5787-RB | 3637 | CG5787-RB | 2028..2099 | 1763..1834 | 225 | 87.5 | Plus |
| CG5787-RB | 3637 | CG5787-RB | 2070..2141 | 1721..1792 | 225 | 87.5 | Plus |
| CG5787-RA | 3478 | CG5787-RA | 1869..1940 | 1763..1834 | 225 | 87.5 | Plus |
| CG5787-RA | 3478 | CG5787-RA | 1911..1982 | 1721..1792 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12710356..12712306 | 1967..17 | 9740 | 99.9 | Minus |
| 2L | 23513712 | 2L | 12709374..12710225 | 2813..1962 | 4260 | 100 | Minus |
| 2L | 23513712 | 2L | 12711146..12711308 | 1018..856 | 740 | 96.9 | Minus |
| 2L | 23513712 | 2L | 12711305..12711467 | 1177..1015 | 740 | 96.9 | Minus |
| 2L | 23513712 | 2L | 12709256..12709310 | 2866..2812 | 275 | 100 | Minus |
| 2L | 23513712 | 2L | 12710489..12710560 | 1792..1721 | 225 | 87.5 | Minus |
| 2L | 23513712 | 2L | 12710531..12710602 | 1834..1763 | 225 | 87.5 | Minus |
Blast to na_te.dros performed 2014-11-27 19:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6924 | 125..323 | 181 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6901 | 152..324 | 151 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2427 | 235..325 | 149 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6854 | 261..373 | 149 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1154 | 268..325 | 146 | 72.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6779 | 282..322 | 142 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6845 | 261..322 | 139 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2431 | 225..320 | 138 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2423 | 282..375 | 137 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1578 | 283..325 | 134 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2609..2649 | 282..322 | 133 | 80.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 97..191 | 228..322 | 131 | 66.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9127..9221 | 228..322 | 131 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6827 | 235..325 | 130 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2406 | 223..325 | 129 | 61.3 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1547..1595 | 281..329 | 128 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6758 | 289..322 | 125 | 85.3 | Plus |
| blood | 7410 | blood BLOOD 7410bp | 2973..3020 | 215..265 | 122 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2358 | 283..322 | 119 | 77.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1106 | 289..322 | 116 | 82.4 | Plus |
BO11209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:40 Download gff for
BO11209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 1..2853 | 17..2870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:49 Download gff for
BO11209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 163..3012 | 17..2868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:21 Download gff for
BO11209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 165..3014 | 17..2868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:40 Download gff for
BO11209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 161..3017 | 14..2871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:22 Download gff for
BO11209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5787-RA | 165..3014 | 17..2868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:22 Download gff for
BO11209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12709254..12709309 | 2813..2868 | 96 | <- | Minus |
| 2L | 12709375..12710225 | 1962..2812 | 100 | <- | Minus |
| 2L | 12710362..12712306 | 17..1961 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:21 Download gff for
BO11209.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12709254..12709309 | 2813..2868 | 96 | <- | Minus |
| arm_2L | 12709375..12710225 | 1962..2812 | 100 | <- | Minus |
| arm_2L | 12710362..12712306 | 17..1961 | 100 | | Minus |
BO11209.pep Sequence
Translation from 16 to 2884
> BO11209.pep
MDYRQMKNDAYGIGQRRGMGSSSGVGGGGGGGGGGMYSSNYGGGGSGANF
GGGGNTSGRGGYGGTFGGGGYGVNRNTSPDGGNFSRGGGNYSNNSNSGGN
NSYPRSGDGDRSGFNPSSNQRFGDNFQDKFRGGPSSNFGQANRGASNQSN
VARLLEVENRMDCNPDVNYRGPQPQGSGDRFFNDEPRNQGSFGNFVPNDG
VPFGGNNAPSFGGNNGPAYGGNSGPSFGGSDVPFGGNSGPSFGGNNQRNF
NNDNFPNRGPNYDDQRSGFNDSYGRSGNHGNFGQNSGNFGDNNRDIGNFN
NRGPAVGGSGGPGFNPNSGGNFGSNNSGGGFSNNFGQNSGNFGDNNRDIG
NFNNRGPAVGGSGGPGFKPNSGGNFGNNNSGGGFSNNISRTFQDSRNNWN
KSQSSSFQNSGYQSNSGGGGGGGGRSGGGGGGGAGGGGGVGSGGSGWEAG
QRAFNSKRNQLQKMNLNNSGSVRKPAPQPAAKAVQNLRNNPQKAEIVKSA
GAPTLRNNKTANLRPGNATGVQKKLPVAAPNQYKVNNVTPNSKTVSVTNK
KPPVAAPAVKTGPQANRTGPQGLRTGPQGLRAGPQGLRSGPQGLRTGQQG
LKTGPQLQKSGPLAPRTGQQAVKGGPQGGKPAGVPSRPPNAPGFPVQISQ
KRVAPPPPLETEAASKSVKKWRRVARKRGFLIGGFKIPYLNDQPKKLPQP
EADSYALTFFEQTFNYSTNQDATEEDFVEAAVVLNEDSEDESVADDAKSA
RKIAKRNRKRIRSDWAPLNESKKYNDWGNWWKDYKNVGEEIDQQLLECGN
LNLEHCFLPNLPKLTTEQVVYAIIKSAHFGLEKNADVPYDTMKTIFTLMN
RTFLDNLTELNMVEIQDIIRGIPNDLWVYKLRSMVFLWAKYKAITNSKST
AEDDVKDQQAIAREWKSPCFHWLAKQAFDELVAISETEWKDHRTVFPSIE
ASFLDH
BO11209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5787-PB | 950 | CG5787-PB | 1..950 | 1..950 | 5161 | 100 | Plus |
| CG5787-PA | 950 | CG5787-PA | 1..950 | 1..950 | 5161 | 100 | Plus |
| Pih1D1-PD | 1094 | CG5792-PD | 306..1094 | 74..951 | 698 | 28.1 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 39..510 | 12..450 | 372 | 30.1 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 39..521 | 12..450 | 372 | 30 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 44..494 | 20..457 | 361 | 30 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 227..568 | 10..450 | 317 | 31.2 | Plus |
