Clone Sequence Records
BO11215.3prime Sequence
842 bp (736 high quality bases) assembled on 2006-04-19
> BO11215.3prime
ATGGTCTAGAAAGCTTGCCCAAACGCTGCACTTTTTCTGAGGGTTCATCG
GTGAGCCGAGGGGACAATTGAACTCCCGCGCAAAGTCAACGGAGTTCGAG
AGCGTCCCAATCACCCGGAAACGACCTGGACTGTGGATGGCCGTGTTCAG
CTTGTTCCGGATGGCCTCCGGTCGCATCGCTCCGCACCAAACCTGACCGA
AGTTCAGGAAGAACAGCTGCGGCCCTGTCATGTTAAGTCCTGGCAGGATC
TCGTCCGACACCTCGCTGGGATGCTCCTTTAGCCAGCGCTGATACGCGTG
GAAGGCCTGCCGGAGGCCTCCATTGTCTGCGATATTCTCACCCTGCGTAC
TCTCTCCATTCAGGACGATTCCCACCTCCTCGACGGTATAGTTGCTATAT
TGGGCAATAATGCAGCGGGCGCGCTCGTCGAACCCGCGAATCGAGGAGTC
CGTCCACCACTTATGTATATTGCCGTTGCGATCGAAGAGCCTACCCTTGT
CATCGAAACCGTGGGTCAGTTCGTGGCCAATGACCACACCGATGCCGCCG
AAGTTCAGCGACTTCGGAAAGTGGCGGTGGTAGAAGGGCGGCTGCAGGAT
GCCGGCGGGAAACATGATCTGGTTCTTGTTGCGGCTATAATAGGCATTGA
CGATGGCAGGAGCTGTCTGCCAGTTGGTCTTGTTGACCCTCTCGTGGAGC
TTGGCCTGCTCCGTTTTGGCCGTGTGAAGCAGAACATTCAGAGTGTTCTC
AAAATACTTTTCCGGATAGATTTCTATGCCCGCGTACTTGCTATTTAACT
CACTGGGATTAAGGATAAAGTCTGGATAGCCGATCTTCAGGG
BO11215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4058-PB | 2937 | Nep4-RB | 2111..2934 | 842..19 | 4120 | 100 | Minus |
CG4058-PA | 3123 | Nep4-RA | 2297..3120 | 842..19 | 4120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep4-RC | 3629 | CG4058-RC | 2497..3320 | 842..19 | 4120 | 100 | Minus |
Nep4-RA | 3632 | CG4058-RA | 2500..3323 | 842..19 | 4120 | 100 | Minus |
Nep4-RB | 3331 | CG4058-RB | 2199..3022 | 842..19 | 4120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20653725..20654227 | 340..842 | 2515 | 100 | Plus |
3R | 32079331 | 3R | 20653242..20653565 | 19..342 | 1620 | 100 | Plus |
X | 23542271 | X | 6102958..6103088 | 612..482 | 310 | 82.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:29:40 has no hits.
BO11215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:10 Download gff for
BO11215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4058-PB | 2111..2937 | 18..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:55 Download gff for
BO11215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4058-PA | 2297..3123 | 18..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:18:30 Download gff for
BO11215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep4-RB | 2199..3022 | 19..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:16 Download gff for
BO11215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep4-RB | 2199..3022 | 19..842 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:16 Download gff for
BO11215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20653242..20653564 | 19..341 | 100 | <- | Plus |
3R | 20653727..20654227 | 342..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:18:30 Download gff for
BO11215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16478964..16479286 | 19..341 | 100 | <- | Plus |
arm_3R | 16479449..16479949 | 342..842 | 100 | | Plus |
BO11215.5prime Sequence
899 bp (778 high quality bases) assembled on 2006-04-19
> BO11215.5prime
GAAGTTATCAGTCGACATGAGTCGCCACAGCCAACTGAAGCTAGCGATGC
CCTCGGTTCACGGAGCTCCAGCCACCGCTCCTGGCTCGCCGATGAACGCC
AAAGCCCGGAGCGTGAAGCTCGGACTGGGTGTTAATCAGCGGACAGGTCG
TGTGCAGTGGTGTCCCGGTCTGACCTGCTGCAAAATGCTTCTACTTCTTC
CAGTGGTAATGCTGCCACTGACCCTGGTGCTCATCCTGATCATGCGGCTG
GACGGGATGCTGGCGGCGCTGCAATTGAACGAACAGAGGATGAGGGATCT
GCGGAACTCTCACAGCGAGGTGCCTGTCTATATGGAGGATTACGAAGCCC
TTTTACCGGAGGGTAGTACCTACAACGACCTGATCAACGAGGAGTTCATA
CTGCCGGCGAGCAAGCGGACCCAACTGCAGATTTTGGCCGCGGAGAGGGC
GCGTCGCTGCCAACCATATCGCTACGGGAACGGGGAGTCCATGGAGTTGG
AGGAGCGCAACACGCTGATGAAGGACTCCCGAACCTCCTTCCTGCCACTG
GGCATTCCGCGAGAGTGCCTCGGCAGCGGCATTGAACTGGACATTAAACC
CATAGATGAGGAGGCCTACCAGAGGCAGAAGAAGCGCTACCAGGACATAG
CTCCGTATTGGCTGGAGAAGATCAGAATACGGGAGCGCCGCGAGGCCGAA
CGTCATGCAGAGGAGGCCAGTGCCGAGATCAGCGAGGCCACCGCCGCTCT
GCAGAGTTTCTGGAACGAGGAAGGCACTCGGGAGGGCATTCGCATGACCC
AGGCCAAAACCATGAAGCGCTACATGGATAACAAAGTGGATCCCTGCGTG
GATTTCTACAAGTACGCCTGCGGCAACTGGGAGCGCCTGCATCCAATAC
BO11215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4058-PA | 3123 | Nep4-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
CG4058-PB | 2937 | Nep4-RB | 2..697 | 204..899 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep4-RA | 3632 | CG4058-RA | 204..1086 | 17..899 | 4415 | 100 | Plus |
Nep4-RC | 3629 | CG4058-RC | 388..1083 | 204..899 | 3480 | 100 | Plus |
Nep4-RB | 3331 | CG4058-RB | 90..785 | 204..899 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20655757..20656639 | 899..17 | 4415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:45:43 has no hits.
BO11215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:11 Download gff for
BO11215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4058-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:56 Download gff for
BO11215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4058-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:22:28 Download gff for
BO11215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep4-RA | 197..1086 | 8..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:32 Download gff for
BO11215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep4-RA | 197..1086 | 8..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:32 Download gff for
BO11215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20655757..20656646 | 8..899 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:22:28 Download gff for
BO11215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16481479..16482368 | 8..899 | 99 | | Minus |
BO11215.complete Sequence
3154 bp assembled on 2010-08-12
GenBank Submission: KX798606
> BO11215.complete
GAAGTTATCAGTCGACATGAGTCGCCACAGCCAACTGAAGCTAGCGATGC
CCTCGGTTCACGGAGCTCCAGCCACCGCTCCTGGCTCGCCGATGAACGCC
AAAGCCCGGAGCGTGAAGCTCGGACTGGGTGTTAATCAGCGGACAGGTCG
TGTGCAGTGGTGTCCCGGTCTGACCTGCTGCAAAATGCTTCTACTTCTTC
CAGTGGTAATGCTGCCACTGACCCTGGTGCTCATCCTGATCATGCGGCTG
GACGGGATGCTGGCGGCGCTGCAATTGAACGAACAGAGGATGAGGGATCT
GCGGAACTCTCACAGCGAGGTGCCTGTCTATATGGAGGATTACGAAGCCC
TTTTACCGGAGGGTAGTACCTACAACGACCTGATCAACGAGGAGTTCATA
CTGCCGGCGAGCAAGCGGACCCAACTGCAGATTTTGGCCGCGGAGAGGGC
GCGTCGCTGCCAACCATATCGCTACGGGAACGGGGAGTCCATGGAGTTGG
AGGAGCGCAACACGCTGATGAAGGACTCCCGAACCTCCTTCCTGCCACTG
GGCATTCCGCGAGAGTGCCTCGGCAGCGGCATTGAACTGGACATTAAACC
CATAGATGAGGAGGCCTACCAGAGGCAGAAGAAGCGCTACCAGGACATAG
CTCCGTATTGGCTGGAGAAGATCAGAATACGGGAGCGCCGCGAGGCCGAA
CGTCATGCAGAGGAGGCCAGTGCCGAGATCAGCGAGGCCACCGCCGCTCT
GCAGAGTTTCTGGAACGAGGAAGGCACTCGGGAGGGCATTCGCATGACCC
AGGCCAAAACCATGAAGCGCTACATGGATAACAAAGTGGATCCCTGCGTG
GATTTCTACAAGTACGCCTGCGGCAACTGGGAGCGCCTGCATCCAATACC
CAAGGATAAGGCCGGCTTCGATACCTTCGAAATGCTGCGTGAGAGTCTGG
ACCTGGTGCTACGAAATCTTCTGGAGAAAAATACCCCTGTGCACTCCGCA
GCGGAGCTACGAAAAAGTCCCGTGCGGAATACTCTATTTAAGCTTAATGA
GCAGGGCGAGGGTGAGGGCGAAGCTGACCAGGCGGCGGAACTTACGGCGG
AACGCCTGCGTCGGCACATTGTCAGTAAGAGGCAGTTGCTTAACCGCGTT
CTGGTGCGCTACAAGCGGTATACCAACGGAACGAAAAGGAAACGCCTCAT
CGAAACCCCACGGGAGAGAACCAAAGAGGAGGAAGCTGCTCCACCAGTTG
TCCTGCCAAAGGATAAAACCAAGGACAAGTCGGATAACGAAGAGCAACTA
CATGTGCCCACCGATTTCCTAAAGCCCCATCAAGATGCCCAGCTAAAAGC
AAAGAATCTGTACCGGTCCTGCGTGAACAGCGCGGTGCTGGCCAAGCGGG
GATTGGAACCGCTGCACACGCTCATTCGGGAACTAGGTGGCTGGCCAGTC
CTGGAGTCCCAATGGAGTGAGTCCAACTTTAACTGGCAGGTGCTAGCCGC
CACCCTTAGACGTTACAACAACGACATCCTCATCGTCCAGTGGGTGGGGG
CGGACATCAAGAACTCCGAGGAGAACATTGTTCAGTTTGACCAGACGGGT
CTGGGCCTGCCCACCAGGGAGTACTTCCTCCAGCCGAGCAACGCCAAGTA
CCTACAGGCCTACCAGCGCTACATGGCCGAGGTGATGCACAAAATGGGCG
CCTCCAAGGCGGATGCCCAGCGGGTGGCCAGCGAGCTGGTGGCGTTCGAA
ACGCAGCTGGCGGGGATTACAGCTCCAGCGGAGCAACGACTTAACGTCAC
CAAGCTCTACAAGCGCATGACGCTGGACCAACTGCAGGCGGTGGTTCCGG
AAATCAAGTGGCGAGCTTACCTGCAGAGTCTGCAAGATCGCGAAGTTCTG
GGCACCGAGGAAGTGGTCATCTACGCGGTGGAGTACATGAGCAAGCTGGT
GACTCTTCTAGATGAAACGGATCCCCGAACGGTTTCCAATTACATGATGT
GGCGCTTTGTGCGGCACAGGATCAACAACGTGGACGATCGATTCGATGAC
ATCAAACAGAGTTTCTACCACGCCCTCTTTGGCCGCGAGGAGAGTCCGCA
GAGATGGAAGGTATGCATCGCCCAGGTGAACACCAACATGGGCATGGCAG
TGGGTTCCATGTTCGTGAGTCGCTATTTCGACAACAACAGCAAGCGGGAC
ACCTTGCGGATGACTCACGATCTGCAGCAGGCCTTTCGGGATATCCTGAA
AACCACTGATTGGCTGGACGACACCACAAAGCAGTTGGCCGAGGAAAAGG
TTAACGCCATGTCCCTGAAGATCGGCTATCCAGACTTTATCCTTAATCCC
AGTGAGTTAAATAGCAAGTACGCGGGCATAGAAATCTATCCGGAAAAGTA
TTTTGAGAACACTCTGAATGTTCTGCTTCACACGGCCAAAACGGAGCAGG
CCAAGCTCCACGAGAGGGTCAACAAGACCAACTGGCAGACAGCTCCTGCC
ATCGTCAATGCCTATTATAGCCGCAACAAGAACCAGATCATGTTTCCCGC
CGGCATCCTGCAGCCGCCCTTCTACCACCGCCACTTTCCGAAGTCGCTGA
ACTTCGGCGGCATCGGTGTGGTCATTGGCCACGAACTGACCCACGGTTTC
GATGACAAGGGTAGGCTCTTCGATCGCAACGGCAATATACATAAGTGGTG
GACGGACTCCTCGATTCGCGGGTTCGACGAGCGCGCCCGCTGCATTATTG
CCCAATATAGCAACTATACCGTCGAGGAGGTGGGAATCGTCCTGAATGGA
GAGAGTACGCAGGGTGAGAATATCGCAGACAATGGAGGCCTCCGGCAGGC
CTTCCACGCGTATCAGCGCTGGCTAAAGGAGCATCCCAGCGAGGTGTCGG
ACGAGATCCTGCCAGGACTTAACATGACAGGGCCGCAGCTGTTCTTCCTG
AACTTCGGTCAGGTTTGGTGCGGAGCGATGCGACCGGAGGCCATCCGGAA
CAAGCTGAACACGGCCATCCACAGTCCAGGTCGTTTCCGGGTGATTGGGA
CGCTCTCGAACTCCGTTGACTTTGCGCGGGAGTTCAATTGTCCCCTCGGC
TCACCGATGAACCCTCAGAAAAAGTGCAGCGTTTGGGCAAGCTTTCTAGA
CCAT
BO11215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep4-RA | 3123 | CG4058-PA | 1..3120 | 17..3136 | 15600 | 100 | Plus |
Nep4-RC | 2937 | CG4058-PC | 2..2934 | 204..3136 | 14665 | 100 | Plus |
Nep4-RB | 2937 | CG4058-PB | 2..2934 | 204..3136 | 14665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep4-RA | 3632 | CG4058-RA | 204..3323 | 17..3136 | 15600 | 100 | Plus |
Nep4-RC | 3629 | CG4058-RC | 388..3320 | 204..3136 | 14665 | 100 | Plus |
Nep4-RB | 3331 | CG4058-RB | 90..3022 | 204..3136 | 14665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20654852..20656639 | 1804..17 | 8940 | 100 | Minus |
3R | 32079331 | 3R | 20653725..20654737 | 2815..1803 | 5065 | 100 | Minus |
3R | 32079331 | 3R | 20653242..20653565 | 3136..2813 | 1620 | 100 | Minus |
X | 23542271 | X | 6102958..6103088 | 2543..2673 | 310 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:11:41 has no hits.
BO11215.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-12 16:46:00 Download gff for
BO11215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep4-RA | 202..3321 | 17..3138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:39 Download gff for
BO11215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep4-RA | 204..3323 | 17..3138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:26 Download gff for
BO11215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep4-RA | 204..3323 | 17..3138 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:26 Download gff for
BO11215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20653240..20653564 | 2814..3138 | 99 | <- | Minus |
3R | 20653727..20654735 | 1805..2813 | 100 | <- | Minus |
3R | 20654852..20656639 | 17..1804 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:39 Download gff for
BO11215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16478962..16479286 | 2814..3138 | 99 | <- | Minus |
arm_3R | 16479449..16480457 | 1805..2813 | 100 | <- | Minus |
arm_3R | 16480574..16482361 | 17..1804 | 100 | | Minus |
BO11215.pep Sequence
Translation from 16 to 3154
> BO11215.pep
MSRHSQLKLAMPSVHGAPATAPGSPMNAKARSVKLGLGVNQRTGRVQWCP
GLTCCKMLLLLPVVMLPLTLVLILIMRLDGMLAALQLNEQRMRDLRNSHS
EVPVYMEDYEALLPEGSTYNDLINEEFILPASKRTQLQILAAERARRCQP
YRYGNGESMELEERNTLMKDSRTSFLPLGIPRECLGSGIELDIKPIDEEA
YQRQKKRYQDIAPYWLEKIRIRERREAERHAEEASAEISEATAALQSFWN
EEGTREGIRMTQAKTMKRYMDNKVDPCVDFYKYACGNWERLHPIPKDKAG
FDTFEMLRESLDLVLRNLLEKNTPVHSAAELRKSPVRNTLFKLNEQGEGE
GEADQAAELTAERLRRHIVSKRQLLNRVLVRYKRYTNGTKRKRLIETPRE
RTKEEEAAPPVVLPKDKTKDKSDNEEQLHVPTDFLKPHQDAQLKAKNLYR
SCVNSAVLAKRGLEPLHTLIRELGGWPVLESQWSESNFNWQVLAATLRRY
NNDILIVQWVGADIKNSEENIVQFDQTGLGLPTREYFLQPSNAKYLQAYQ
RYMAEVMHKMGASKADAQRVASELVAFETQLAGITAPAEQRLNVTKLYKR
MTLDQLQAVVPEIKWRAYLQSLQDREVLGTEEVVIYAVEYMSKLVTLLDE
TDPRTVSNYMMWRFVRHRINNVDDRFDDIKQSFYHALFGREESPQRWKVC
IAQVNTNMGMAVGSMFVSRYFDNNSKRDTLRMTHDLQQAFRDILKTTDWL
DDTTKQLAEEKVNAMSLKIGYPDFILNPSELNSKYAGIEIYPEKYFENTL
NVLLHTAKTEQAKLHERVNKTNWQTAPAIVNAYYSRNKNQIMFPAGILQP
PFYHRHFPKSLNFGGIGVVIGHELTHGFDDKGRLFDRNGNIHKWWTDSSI
RGFDERARCIIAQYSNYTVEEVGIVLNGESTQGENIADNGGLRQAFHAYQ
RWLKEHPSEVSDEILPGLNMTGPQLFFLNFGQVWCGAMRPEAIRNKLNTA
IHSPGRFRVIGTLSNSVDFAREFNCPLGSPMNPQKKCSVWASFLDH
BO11215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep4-PA | 1040 | CG4058-PA | 1..1040 | 1..1040 | 5459 | 100 | Plus |
Nep4-PC | 978 | CG4058-PC | 1..978 | 63..1040 | 5126 | 99.9 | Plus |
Nep4-PB | 978 | CG4058-PB | 1..978 | 63..1040 | 5126 | 99.9 | Plus |
Nep1-PD | 849 | CG5905-PD | 249..849 | 441..1040 | 1450 | 44.9 | Plus |
Nep1-PC | 849 | CG5905-PC | 249..849 | 441..1040 | 1450 | 44.9 | Plus |
Nep1-PD | 849 | CG5905-PD | 158..240 | 249..321 | 168 | 38.6 | Plus |