Clone BO11215 Report

Search the DGRC for BO11215

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptNep4-RA
Protein status:BO11215.pep: Imported from assembly
Sequenced Size:3154

Clone Sequence Records

BO11215.3prime Sequence

842 bp (736 high quality bases) assembled on 2006-04-19

> BO11215.3prime
ATGGTCTAGAAAGCTTGCCCAAACGCTGCACTTTTTCTGAGGGTTCATCG
GTGAGCCGAGGGGACAATTGAACTCCCGCGCAAAGTCAACGGAGTTCGAG
AGCGTCCCAATCACCCGGAAACGACCTGGACTGTGGATGGCCGTGTTCAG
CTTGTTCCGGATGGCCTCCGGTCGCATCGCTCCGCACCAAACCTGACCGA
AGTTCAGGAAGAACAGCTGCGGCCCTGTCATGTTAAGTCCTGGCAGGATC
TCGTCCGACACCTCGCTGGGATGCTCCTTTAGCCAGCGCTGATACGCGTG
GAAGGCCTGCCGGAGGCCTCCATTGTCTGCGATATTCTCACCCTGCGTAC
TCTCTCCATTCAGGACGATTCCCACCTCCTCGACGGTATAGTTGCTATAT
TGGGCAATAATGCAGCGGGCGCGCTCGTCGAACCCGCGAATCGAGGAGTC
CGTCCACCACTTATGTATATTGCCGTTGCGATCGAAGAGCCTACCCTTGT
CATCGAAACCGTGGGTCAGTTCGTGGCCAATGACCACACCGATGCCGCCG
AAGTTCAGCGACTTCGGAAAGTGGCGGTGGTAGAAGGGCGGCTGCAGGAT
GCCGGCGGGAAACATGATCTGGTTCTTGTTGCGGCTATAATAGGCATTGA
CGATGGCAGGAGCTGTCTGCCAGTTGGTCTTGTTGACCCTCTCGTGGAGC
TTGGCCTGCTCCGTTTTGGCCGTGTGAAGCAGAACATTCAGAGTGTTCTC
AAAATACTTTTCCGGATAGATTTCTATGCCCGCGTACTTGCTATTTAACT
CACTGGGATTAAGGATAAAGTCTGGATAGCCGATCTTCAGGG

BO11215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4058-PB 2937 Nep4-RB 2111..2934 842..19 4120 100 Minus
CG4058-PA 3123 Nep4-RA 2297..3120 842..19 4120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Nep4-RC 3629 CG4058-RC 2497..3320 842..19 4120 100 Minus
Nep4-RA 3632 CG4058-RA 2500..3323 842..19 4120 100 Minus
Nep4-RB 3331 CG4058-RB 2199..3022 842..19 4120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20653725..20654227 340..842 2515 100 Plus
3R 32079331 3R 20653242..20653565 19..342 1620 100 Plus
X 23542271 X 6102958..6103088 612..482 310 82.4 Minus
Blast to na_te.dros performed on 2015-02-12 19:29:40 has no hits.

BO11215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:10 Download gff for BO11215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4058-PB 2111..2937 18..842 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:55 Download gff for BO11215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4058-PA 2297..3123 18..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:18:30 Download gff for BO11215.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep4-RB 2199..3022 19..842 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:16 Download gff for BO11215.3prime
Subject Subject Range Query Range Percent Splice Strand
Nep4-RB 2199..3022 19..842 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:16 Download gff for BO11215.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20653242..20653564 19..341 100 <- Plus
3R 20653727..20654227 342..842 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:18:30 Download gff for BO11215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16478964..16479286 19..341 100 <- Plus
arm_3R 16479449..16479949 342..842 100   Plus

BO11215.5prime Sequence

899 bp (778 high quality bases) assembled on 2006-04-19

> BO11215.5prime
GAAGTTATCAGTCGACATGAGTCGCCACAGCCAACTGAAGCTAGCGATGC
CCTCGGTTCACGGAGCTCCAGCCACCGCTCCTGGCTCGCCGATGAACGCC
AAAGCCCGGAGCGTGAAGCTCGGACTGGGTGTTAATCAGCGGACAGGTCG
TGTGCAGTGGTGTCCCGGTCTGACCTGCTGCAAAATGCTTCTACTTCTTC
CAGTGGTAATGCTGCCACTGACCCTGGTGCTCATCCTGATCATGCGGCTG
GACGGGATGCTGGCGGCGCTGCAATTGAACGAACAGAGGATGAGGGATCT
GCGGAACTCTCACAGCGAGGTGCCTGTCTATATGGAGGATTACGAAGCCC
TTTTACCGGAGGGTAGTACCTACAACGACCTGATCAACGAGGAGTTCATA
CTGCCGGCGAGCAAGCGGACCCAACTGCAGATTTTGGCCGCGGAGAGGGC
GCGTCGCTGCCAACCATATCGCTACGGGAACGGGGAGTCCATGGAGTTGG
AGGAGCGCAACACGCTGATGAAGGACTCCCGAACCTCCTTCCTGCCACTG
GGCATTCCGCGAGAGTGCCTCGGCAGCGGCATTGAACTGGACATTAAACC
CATAGATGAGGAGGCCTACCAGAGGCAGAAGAAGCGCTACCAGGACATAG
CTCCGTATTGGCTGGAGAAGATCAGAATACGGGAGCGCCGCGAGGCCGAA
CGTCATGCAGAGGAGGCCAGTGCCGAGATCAGCGAGGCCACCGCCGCTCT
GCAGAGTTTCTGGAACGAGGAAGGCACTCGGGAGGGCATTCGCATGACCC
AGGCCAAAACCATGAAGCGCTACATGGATAACAAAGTGGATCCCTGCGTG
GATTTCTACAAGTACGCCTGCGGCAACTGGGAGCGCCTGCATCCAATAC

BO11215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4058-PA 3123 Nep4-RA 1..883 17..899 4415 100 Plus
CG4058-PB 2937 Nep4-RB 2..697 204..899 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
Nep4-RA 3632 CG4058-RA 204..1086 17..899 4415 100 Plus
Nep4-RC 3629 CG4058-RC 388..1083 204..899 3480 100 Plus
Nep4-RB 3331 CG4058-RB 90..785 204..899 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20655757..20656639 899..17 4415 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:45:43 has no hits.

BO11215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:11 Download gff for BO11215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4058-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:56 Download gff for BO11215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4058-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:22:28 Download gff for BO11215.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep4-RA 197..1086 8..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:32 Download gff for BO11215.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep4-RA 197..1086 8..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:32 Download gff for BO11215.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20655757..20656646 8..899 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:22:28 Download gff for BO11215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16481479..16482368 8..899 99   Minus

BO11215.complete Sequence

3154 bp assembled on 2010-08-12

GenBank Submission: KX798606

> BO11215.complete
GAAGTTATCAGTCGACATGAGTCGCCACAGCCAACTGAAGCTAGCGATGC
CCTCGGTTCACGGAGCTCCAGCCACCGCTCCTGGCTCGCCGATGAACGCC
AAAGCCCGGAGCGTGAAGCTCGGACTGGGTGTTAATCAGCGGACAGGTCG
TGTGCAGTGGTGTCCCGGTCTGACCTGCTGCAAAATGCTTCTACTTCTTC
CAGTGGTAATGCTGCCACTGACCCTGGTGCTCATCCTGATCATGCGGCTG
GACGGGATGCTGGCGGCGCTGCAATTGAACGAACAGAGGATGAGGGATCT
GCGGAACTCTCACAGCGAGGTGCCTGTCTATATGGAGGATTACGAAGCCC
TTTTACCGGAGGGTAGTACCTACAACGACCTGATCAACGAGGAGTTCATA
CTGCCGGCGAGCAAGCGGACCCAACTGCAGATTTTGGCCGCGGAGAGGGC
GCGTCGCTGCCAACCATATCGCTACGGGAACGGGGAGTCCATGGAGTTGG
AGGAGCGCAACACGCTGATGAAGGACTCCCGAACCTCCTTCCTGCCACTG
GGCATTCCGCGAGAGTGCCTCGGCAGCGGCATTGAACTGGACATTAAACC
CATAGATGAGGAGGCCTACCAGAGGCAGAAGAAGCGCTACCAGGACATAG
CTCCGTATTGGCTGGAGAAGATCAGAATACGGGAGCGCCGCGAGGCCGAA
CGTCATGCAGAGGAGGCCAGTGCCGAGATCAGCGAGGCCACCGCCGCTCT
GCAGAGTTTCTGGAACGAGGAAGGCACTCGGGAGGGCATTCGCATGACCC
AGGCCAAAACCATGAAGCGCTACATGGATAACAAAGTGGATCCCTGCGTG
GATTTCTACAAGTACGCCTGCGGCAACTGGGAGCGCCTGCATCCAATACC
CAAGGATAAGGCCGGCTTCGATACCTTCGAAATGCTGCGTGAGAGTCTGG
ACCTGGTGCTACGAAATCTTCTGGAGAAAAATACCCCTGTGCACTCCGCA
GCGGAGCTACGAAAAAGTCCCGTGCGGAATACTCTATTTAAGCTTAATGA
GCAGGGCGAGGGTGAGGGCGAAGCTGACCAGGCGGCGGAACTTACGGCGG
AACGCCTGCGTCGGCACATTGTCAGTAAGAGGCAGTTGCTTAACCGCGTT
CTGGTGCGCTACAAGCGGTATACCAACGGAACGAAAAGGAAACGCCTCAT
CGAAACCCCACGGGAGAGAACCAAAGAGGAGGAAGCTGCTCCACCAGTTG
TCCTGCCAAAGGATAAAACCAAGGACAAGTCGGATAACGAAGAGCAACTA
CATGTGCCCACCGATTTCCTAAAGCCCCATCAAGATGCCCAGCTAAAAGC
AAAGAATCTGTACCGGTCCTGCGTGAACAGCGCGGTGCTGGCCAAGCGGG
GATTGGAACCGCTGCACACGCTCATTCGGGAACTAGGTGGCTGGCCAGTC
CTGGAGTCCCAATGGAGTGAGTCCAACTTTAACTGGCAGGTGCTAGCCGC
CACCCTTAGACGTTACAACAACGACATCCTCATCGTCCAGTGGGTGGGGG
CGGACATCAAGAACTCCGAGGAGAACATTGTTCAGTTTGACCAGACGGGT
CTGGGCCTGCCCACCAGGGAGTACTTCCTCCAGCCGAGCAACGCCAAGTA
CCTACAGGCCTACCAGCGCTACATGGCCGAGGTGATGCACAAAATGGGCG
CCTCCAAGGCGGATGCCCAGCGGGTGGCCAGCGAGCTGGTGGCGTTCGAA
ACGCAGCTGGCGGGGATTACAGCTCCAGCGGAGCAACGACTTAACGTCAC
CAAGCTCTACAAGCGCATGACGCTGGACCAACTGCAGGCGGTGGTTCCGG
AAATCAAGTGGCGAGCTTACCTGCAGAGTCTGCAAGATCGCGAAGTTCTG
GGCACCGAGGAAGTGGTCATCTACGCGGTGGAGTACATGAGCAAGCTGGT
GACTCTTCTAGATGAAACGGATCCCCGAACGGTTTCCAATTACATGATGT
GGCGCTTTGTGCGGCACAGGATCAACAACGTGGACGATCGATTCGATGAC
ATCAAACAGAGTTTCTACCACGCCCTCTTTGGCCGCGAGGAGAGTCCGCA
GAGATGGAAGGTATGCATCGCCCAGGTGAACACCAACATGGGCATGGCAG
TGGGTTCCATGTTCGTGAGTCGCTATTTCGACAACAACAGCAAGCGGGAC
ACCTTGCGGATGACTCACGATCTGCAGCAGGCCTTTCGGGATATCCTGAA
AACCACTGATTGGCTGGACGACACCACAAAGCAGTTGGCCGAGGAAAAGG
TTAACGCCATGTCCCTGAAGATCGGCTATCCAGACTTTATCCTTAATCCC
AGTGAGTTAAATAGCAAGTACGCGGGCATAGAAATCTATCCGGAAAAGTA
TTTTGAGAACACTCTGAATGTTCTGCTTCACACGGCCAAAACGGAGCAGG
CCAAGCTCCACGAGAGGGTCAACAAGACCAACTGGCAGACAGCTCCTGCC
ATCGTCAATGCCTATTATAGCCGCAACAAGAACCAGATCATGTTTCCCGC
CGGCATCCTGCAGCCGCCCTTCTACCACCGCCACTTTCCGAAGTCGCTGA
ACTTCGGCGGCATCGGTGTGGTCATTGGCCACGAACTGACCCACGGTTTC
GATGACAAGGGTAGGCTCTTCGATCGCAACGGCAATATACATAAGTGGTG
GACGGACTCCTCGATTCGCGGGTTCGACGAGCGCGCCCGCTGCATTATTG
CCCAATATAGCAACTATACCGTCGAGGAGGTGGGAATCGTCCTGAATGGA
GAGAGTACGCAGGGTGAGAATATCGCAGACAATGGAGGCCTCCGGCAGGC
CTTCCACGCGTATCAGCGCTGGCTAAAGGAGCATCCCAGCGAGGTGTCGG
ACGAGATCCTGCCAGGACTTAACATGACAGGGCCGCAGCTGTTCTTCCTG
AACTTCGGTCAGGTTTGGTGCGGAGCGATGCGACCGGAGGCCATCCGGAA
CAAGCTGAACACGGCCATCCACAGTCCAGGTCGTTTCCGGGTGATTGGGA
CGCTCTCGAACTCCGTTGACTTTGCGCGGGAGTTCAATTGTCCCCTCGGC
TCACCGATGAACCCTCAGAAAAAGTGCAGCGTTTGGGCAAGCTTTCTAGA
CCAT

BO11215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
Nep4-RA 3123 CG4058-PA 1..3120 17..3136 15600 100 Plus
Nep4-RC 2937 CG4058-PC 2..2934 204..3136 14665 100 Plus
Nep4-RB 2937 CG4058-PB 2..2934 204..3136 14665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Nep4-RA 3632 CG4058-RA 204..3323 17..3136 15600 100 Plus
Nep4-RC 3629 CG4058-RC 388..3320 204..3136 14665 100 Plus
Nep4-RB 3331 CG4058-RB 90..3022 204..3136 14665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20654852..20656639 1804..17 8940 100 Minus
3R 32079331 3R 20653725..20654737 2815..1803 5065 100 Minus
3R 32079331 3R 20653242..20653565 3136..2813 1620 100 Minus
X 23542271 X 6102958..6103088 2543..2673 310 82.4 Plus
Blast to na_te.dros performed on 2014-11-27 01:11:41 has no hits.

BO11215.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-12 16:46:00 Download gff for BO11215.complete
Subject Subject Range Query Range Percent Splice Strand
Nep4-RA 202..3321 17..3138 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:39 Download gff for BO11215.complete
Subject Subject Range Query Range Percent Splice Strand
Nep4-RA 204..3323 17..3138 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:26 Download gff for BO11215.complete
Subject Subject Range Query Range Percent Splice Strand
Nep4-RA 204..3323 17..3138 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:26 Download gff for BO11215.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20653240..20653564 2814..3138 99 <- Minus
3R 20653727..20654735 1805..2813 100 <- Minus
3R 20654852..20656639 17..1804 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:39 Download gff for BO11215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16478962..16479286 2814..3138 99 <- Minus
arm_3R 16479449..16480457 1805..2813 100 <- Minus
arm_3R 16480574..16482361 17..1804 100   Minus

BO11215.pep Sequence

Translation from 16 to 3154

> BO11215.pep
MSRHSQLKLAMPSVHGAPATAPGSPMNAKARSVKLGLGVNQRTGRVQWCP
GLTCCKMLLLLPVVMLPLTLVLILIMRLDGMLAALQLNEQRMRDLRNSHS
EVPVYMEDYEALLPEGSTYNDLINEEFILPASKRTQLQILAAERARRCQP
YRYGNGESMELEERNTLMKDSRTSFLPLGIPRECLGSGIELDIKPIDEEA
YQRQKKRYQDIAPYWLEKIRIRERREAERHAEEASAEISEATAALQSFWN
EEGTREGIRMTQAKTMKRYMDNKVDPCVDFYKYACGNWERLHPIPKDKAG
FDTFEMLRESLDLVLRNLLEKNTPVHSAAELRKSPVRNTLFKLNEQGEGE
GEADQAAELTAERLRRHIVSKRQLLNRVLVRYKRYTNGTKRKRLIETPRE
RTKEEEAAPPVVLPKDKTKDKSDNEEQLHVPTDFLKPHQDAQLKAKNLYR
SCVNSAVLAKRGLEPLHTLIRELGGWPVLESQWSESNFNWQVLAATLRRY
NNDILIVQWVGADIKNSEENIVQFDQTGLGLPTREYFLQPSNAKYLQAYQ
RYMAEVMHKMGASKADAQRVASELVAFETQLAGITAPAEQRLNVTKLYKR
MTLDQLQAVVPEIKWRAYLQSLQDREVLGTEEVVIYAVEYMSKLVTLLDE
TDPRTVSNYMMWRFVRHRINNVDDRFDDIKQSFYHALFGREESPQRWKVC
IAQVNTNMGMAVGSMFVSRYFDNNSKRDTLRMTHDLQQAFRDILKTTDWL
DDTTKQLAEEKVNAMSLKIGYPDFILNPSELNSKYAGIEIYPEKYFENTL
NVLLHTAKTEQAKLHERVNKTNWQTAPAIVNAYYSRNKNQIMFPAGILQP
PFYHRHFPKSLNFGGIGVVIGHELTHGFDDKGRLFDRNGNIHKWWTDSSI
RGFDERARCIIAQYSNYTVEEVGIVLNGESTQGENIADNGGLRQAFHAYQ
RWLKEHPSEVSDEILPGLNMTGPQLFFLNFGQVWCGAMRPEAIRNKLNTA
IHSPGRFRVIGTLSNSVDFAREFNCPLGSPMNPQKKCSVWASFLDH

BO11215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Nep4-PA 1040 CG4058-PA 1..1040 1..1040 5459 100 Plus
Nep4-PC 978 CG4058-PC 1..978 63..1040 5126 99.9 Plus
Nep4-PB 978 CG4058-PB 1..978 63..1040 5126 99.9 Plus
Nep1-PD 849 CG5905-PD 249..849 441..1040 1450 44.9 Plus
Nep1-PC 849 CG5905-PC 249..849 441..1040 1450 44.9 Plus
Nep1-PD 849 CG5905-PD 158..240 249..321 168 38.6 Plus