Clone BO11216 Report

Search the DGRC for BO11216

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:16
Vector:pDNR-Dual
Associated Gene/Transcriptvav-RA
Protein status:BO11216.pep:
Sequenced Size:2413

Clone Sequence Records

BO11216.3prime Sequence

805 bp (694 high quality bases) assembled on 2006-04-19

> BO11216.3prime
ATGGTCTAGAAAGCTTGCAAGCTCTTCGCTGGCCAATTTCTGCTCCTGCA
CATACTCCTTGGGAAAGTAGCCCACCGTATCGCCGATTTTGCCACGCCAC
CAGCCCTTGCTGTCCCCATCCTTGCCAATGACCAGCACCTGGCAGTCAGT
GCGCAGCTGCAGCTGATTGCTGCCCGCCTTTGGTTCGTAGTCGTAGAGAG
CGGTGGCGATCACCTCCTTGTAGGGCCACTGCAGCGACTGATTGAGCCCC
GCAAAGTTCTCGCCCAGATCGTTGCGTTCATAATAGGAGACCAGCTCGAC
AATGGTCTTGAAATGCCTTCGCGAGGATAAGCAGTACAGCATGGAGTCGC
CGGAGTTCTCCTGGTTGATTTTCATGTGCTTGATCACATTATCATCGGTC
TTTAGGCTAAGCGCATACATCGTCTCGTGGGCAGTGGATGGGCCCTGCGG
ACGAACTCGCAACAGGTAGGTGCCTATGCGCCGGTTCTCCAGCCGGTGGG
CCGCCGTCTCCCGATCCATGTTGCCCGCAAACCAATTGAACTCGGACAAC
TGACGATCGCAGACGGGTGGCGGCACACTTACCGGATTCTGTTTGCAGCG
ACCCGTCGACGAGATGCAGCCCTTGTGCACGCTGATCTGGCACACCTTGC
ATCGATAGCCCTGGTGGATGCGGCCCTTGAGGAACTTGGAGCAGTGACGG
CACGTTGTCGGGGCGTCAAACGTGTAGATCTCCATTTTGTGGTCTGTGCT
TTGGCAGCCAGGCGGTTCCAGGCTTTCCATGGCCTCGGTGAGCGCCTTGC
GCCAC

BO11216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7893-PA 2382 vav-RA 1593..2379 805..19 3935 100 Minus
CG7893-PB 2382 vav-RB 1593..2379 805..19 3935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
Vav-RD 3925 CG7893-RD 2625..3411 805..19 3935 100 Minus
Vav-RC 4036 CG7893-RC 2736..3522 805..19 3935 100 Minus
Vav-RB 4603 CG7893-RB 2112..2898 805..19 3935 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19270622..19271000 778..400 1895 100 Minus
X 23542271 X 19271282..19271461 248..69 885 99.4 Minus
X 23542271 X 19271073..19271226 400..247 770 100 Minus
X 23542271 X 19271518..19271575 76..19 290 100 Minus
Blast to na_te.dros performed on 2015-02-01 11:16:23 has no hits.

BO11216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:12 Download gff for BO11216.3prime
Subject Subject Range Query Range Percent Splice Strand
vav-PB 1593..2382 16..805 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:58 Download gff for BO11216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7893-PB 1593..2382 16..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:36:06 Download gff for BO11216.3prime
Subject Subject Range Query Range Percent Splice Strand
Vav-RB 2112..2898 19..805 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:10:55 Download gff for BO11216.3prime
Subject Subject Range Query Range Percent Splice Strand
Vav-RB 2112..2898 19..805 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:10:55 Download gff for BO11216.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19270524..19270550 779..805 100 -> Minus
X 19270622..19270999 401..778 100 -> Minus
X 19271073..19271225 248..400 100 -> Minus
X 19271283..19271454 76..247 100 -> Minus
X 19271519..19271575 19..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:36:06 Download gff for BO11216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19164557..19164583 779..805 100 -> Minus
arm_X 19164655..19165032 401..778 100 -> Minus
arm_X 19165106..19165258 248..400 100 -> Minus
arm_X 19165316..19165487 76..247 100 -> Minus
arm_X 19165552..19165608 19..75 100   Minus

BO11216.5prime Sequence

756 bp (729 high quality bases) assembled on 2006-04-19

> BO11216.5prime
GAAGTTATCAGTCGACATGGCCAGCAGCAGTAGCAGCAACAGTTTTGGGG
GCGTGGCCGGCGTGAACGGGGATCTGTGGCGCGAGTGCGTCGCCTGGCTG
ACCAGGTGCAAGGTCATTCCGCCCGACCACAAGGCCGCCCAGCCGGACGC
CGAGATCCGCATCCTGGCGATGACGCTGCGCGACGGCGTGCTGCTCTGCA
ACCTGGTCATCCACCTGGACCCCAGCAGCTTGGATCCGCGCGAGTTCAAT
CGCAAGCCGCAAATGGCACAGTTCCTGTGCAGCAAGAACATCAAGTTGTT
CCTGGACGTGTGCCACAACAACTTCGGGATCCGGGACGCCGATCTCTTCG
AGCCGACAATGCTGTACGACCTGACCAACTTCCACCGTGTCCTCATCACG
CTCTCCAAGTTGTCGCAGTGCCGCAAGGTGCAGCAACTGCATCCGGATCT
TATTGGCTTCAACCTACAGCTTTCGCCCACGGAGCGTTCCCATTCGGACG
AGGCCATCTACAAGGACCTGCATTCCACTACCACCGACAATATTGCATGC
AATGGAACCGGTTACGACCACACCAACACAAAAGAGGAGGAGGTGTACCA
AGACCTGTGCGCCCTGCACAGGACGAGTAGAAGCCAGACCGCCTCGTCGA
CGAGCTTTGAGCAGCGCGACTATGTCATCCGCGAGCTGATCGACACGGAG
TCCAATTACCTGGACGTTCTCACTGCGCTGAAGACCAAGTTTATGGGTCC
GCTGGA

BO11216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7893-PA 2382 vav-RA 1..740 17..756 3700 100 Plus
CG7893-PB 2382 vav-RB 1..740 17..756 3700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Vav-RB 4603 CG7893-RB 516..1259 13..756 3705 99.9 Plus
Vav-RA 3412 CG7893-RA 516..1259 13..756 3705 99.9 Plus
Vav-RD 3925 CG7893-RD 516..1031 13..528 2565 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19262335..19262593 13..271 1280 99.6 Plus
X 23542271 X 19263130..19263314 269..453 925 100 Plus
X 23542271 X 19269482..19269602 636..756 605 100 Plus
X 23542271 X 19269257..19269365 529..637 545 100 Plus
X 23542271 X 19263881..19263955 454..528 375 100 Plus
Blast to na_te.dros performed 2015-02-10 22:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1596..1634 532..570 114 76.9 Plus

BO11216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:13 Download gff for BO11216.5prime
Subject Subject Range Query Range Percent Splice Strand
vav-PB 1..739 17..755 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:22:59 Download gff for BO11216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7893-PB 1..739 17..755 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:53:57 Download gff for BO11216.5prime
Subject Subject Range Query Range Percent Splice Strand
Vav-RA 516..1258 13..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:00 Download gff for BO11216.5prime
Subject Subject Range Query Range Percent Splice Strand
Vav-RA 516..1258 13..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:00 Download gff for BO11216.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19262335..19262593 13..271 99 -> Plus
X 19263133..19263314 272..453 100 -> Plus
X 19263881..19263955 454..528 100 -> Plus
X 19269257..19269365 529..637 100 -> Plus
X 19269484..19269601 638..755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:53:57 Download gff for BO11216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19156368..19156626 13..271 99 -> Plus
arm_X 19157166..19157347 272..453 100 -> Plus
arm_X 19157914..19157988 454..528 100 -> Plus
arm_X 19163290..19163398 529..637 100 -> Plus
arm_X 19163517..19163634 638..755 100   Plus

BO11216.complete Sequence

2413 bp assembled on 2008-01-16

GenBank Submission: KX793935

> BO11216.complete
GAAGTTATCAGTCGACATGGCCAGCAGCAGTAGCAGCAACAGTTTTGGGG
GCGTGGCCGGCGTGAACGGGGATCTGTGGCGCGAGTGCGTCGCCTGGCTG
ACCAGGTGCAAGGTCATTCCGCCCGACCACAAGGCCGCCCAGCCGGACGC
CGAGATCCGCATCCTGGCGATGACGCTGCGCGACGGCGTGCTGCTCTGCA
ACCTGGTCATCCACCTGGACCCCAGCAGCTTGGATCCGCGCGAGTTCAAT
CGCAAGCCGCAAATGGCACAGTTCCTGTGCAGCAAGAACATCAAGTTGTT
CCTGGACGTGTGCCACAACAACTTCGGGATCCGGGACGCCGATCTCTTCG
AGCCGACAATGCTGTACGACCTGACCAACTTCCACCGTGTCCTCATCACG
CTCTCCAAGTTGTCGCAGTGCCGCAAGGTGCAGCAACTGCATCCGGATCT
TATTGGCTTCAACCTACAGCTTTCGCCCACGGAGCGTTCCCATTCGGACG
AGGCCATCTACAAGGACCTGCATTCCACTACCACCGACAATATTGCATGC
AATGGAACCGGTTACGACCACACCAACACAAAAGAGGAGGAGGTGTACCA
AGACCTGTGCGCCCTGCACAGGACGAGTAGAAGCCAGACCGCCTCGTCGA
CGAGCTTTGAGCAGCGCGACTATGTCATCCGCGAGCTGATCGACACGGAG
TCCAATTACCTGGACGTTCTCACTGCGCTGAAGACCAAGTTTATGGGTCC
GCTGGAGCGGCATCTCAACCAGGACGAGCTGCGTCTCATATTCCCGCGCA
TCAGAGAGCTGGTCGACATCCATACAAAGTTCCTGGACAAACTAAGGGAA
TCGCTGACGCCCAATGCCAAAGTGAAGATGGCCCAGGTGTTTCTCGACTT
CCGCGAACCCTTCCTCATCTACGGCGAGTTCTGCTCCCTCCTGCTGGGCG
CCATTGACTATTTGGCGGATGTGTGCAAGAAGAACCAGATCATCGATCAG
CTGGTGCAGAAGTGCGAGCGGGACTACAATGTGGGCAAACTGCAGCTACG
TGACATACTCTCAGTGCCCATGCAGCGCATTCTCAAGTACCATCTGCTGC
TGGACAAGCTGGTGAAGGAGACATCGCCGCTGCACGACGATTACCGCTCG
CTGGAGCGGGCCAAGGAGGCGATGATAGACGTGTCGCAATATATCAACGA
GGTGAAACGCGACTCCGATCACCTGGTCATCATACAGAAGGTGAAGGACA
GCATCTGCGATATTCATCTGCTGCAGAATGGCAACGGCAGCGATCTGCTG
CAGTACGGCCGCCTGCTTCTCGACGGTGAGCTGCACATTAAGGCGCACGA
GGACCAGAAGACCAAGCTGCGATACGCCTTCGTTTTCGACAAGATCCTCA
TCATGGTGAAGGCGCTGCATATCAAGACGGGCGACATGCAGTACACCTAC
CGCGACTCCCACAACCTGGCCGACTATCGCGTGGAGCAGAGCCATTCGCG
ACGCACTATTGGCCGCGATACGCGATTCAAGTACCAGCTCCTCCTGGCCC
GCAAGTCGGGCAAGACAGCCTTCACTTTGTACCTGAAATCGGAGCACGAG
CGGGACAAGTGGCGCAAGGCGCTCACCGAGGCCATGGAAAGCCTGGAACC
GCCTGGCTGCCAAAGCACAGACCACAAAATGGAGATCTACACGTTTGACG
CCCCGACAACGTGCCGTCACTGCTCCAAGTTCCTCAAGGGCCGCATCCAC
CAGGGCTATCGATGCAAGGTGTGCCAGATCAGCGTGCACAAGGGCTGCAT
CTCGTCGACGGGTCGCTGCAAACAGAATCCGGTAAGTGTGCCGCCACCCG
TCTGCGATCGTCAGTTGTCCGAGTTCAATTGGTTTGCGGGCAACATGGAT
CGGGAGACGGCGGCCCACCGGCTGGAGAACCGGCGCATAGGCACCTACCT
GTTGCGAGTTCGTCCGCAGGGCCCATCCACTGCCCACGAGACGATGTATG
CGCTTAGCCTAAAGACCGATGATAATGTGATCAAGCACATGAAAATCAAC
CAGGAGAACTCCGGCGACTCCATGCTGTACTGCTTATCCTCGCGAAGGCA
TTTCAAGACCATTGTCGAGCTGGTCTCCTATTATGAACGCAACGATCTGG
GCGAGAACTTTGCGGGGCTCAATCAGTCGCTGCAGTGGCCCTACAAGGAG
GTGATCGCCACCGCTCTCTACGACTACGAACCAAAGGCGGGCAGCAATCA
GCTGCAGCTGCGCACTGACTGCCAGGTGCTGGTCATTGGCAAGGATGGGG
ACAGCAAGGGCTGGTGGCGTGGCAAAATCGGCGATACGGTGGGCTACTTT
CCCAAGGAGTATGTGCAGGAGCAGAAATTGGCCAGCGAAGAGCTTGCAAG
CTTTCTAGACCAT

BO11216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Vav-RB 2382 CG7893-PB 1..2379 17..2395 11895 100 Plus
Vav-RA 2382 CG7893-PA 1..2379 17..2395 11895 100 Plus
Vav-RC 3006 CG7893-PC 1137..3003 529..2395 9335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Vav-RB 4603 CG7893-RB 516..2898 13..2395 11900 100 Plus
Vav-RA 3412 CG7893-RA 516..2898 13..2395 11900 100 Plus
Vav-RC 4036 CG7893-RC 1656..3522 529..2395 9335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19269721..19270551 806..1636 4155 100 Plus
X 23542271 X 19270622..19271000 1636..2014 1895 100 Plus
X 23542271 X 19262335..19262593 13..271 1280 99.6 Plus
X 23542271 X 19263130..19263314 269..453 925 100 Plus
X 23542271 X 19271282..19271461 2166..2345 885 99.4 Plus
X 23542271 X 19269482..19269652 636..806 855 100 Plus
X 23542271 X 19271073..19271226 2014..2167 770 100 Plus
X 23542271 X 19269257..19269365 529..637 545 100 Plus
X 23542271 X 19263881..19263955 454..528 375 100 Plus
X 23542271 X 19271518..19271575 2338..2395 290 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:21:56 has no hits.

BO11216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:43 Download gff for BO11216.complete
Subject Subject Range Query Range Percent Splice Strand
vav-RB 1..2382 17..2398 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:43 Download gff for BO11216.complete
Subject Subject Range Query Range Percent Splice Strand
vav-RB 509..2887 17..2397 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:01 Download gff for BO11216.complete
Subject Subject Range Query Range Percent Splice Strand
Vav-RA 520..2898 17..2397 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:43 Download gff for BO11216.complete
Subject Subject Range Query Range Percent Splice Strand
vav-RB 505..2887 13..2395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:45 Download gff for BO11216.complete
Subject Subject Range Query Range Percent Splice Strand
Vav-RA 520..2898 17..2397 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:45 Download gff for BO11216.complete
Subject Subject Range Query Range Percent Splice Strand
X 19269484..19269651 638..805 100 -> Plus
X 19271073..19271225 2014..2166 100 -> Plus
X 19262339..19262593 17..271 100 -> Plus
X 19271283..19271454 2167..2338 100 -> Plus
X 19271519..19271575 2339..2397 96   Plus
X 19263133..19263314 272..453 100 -> Plus
X 19263881..19263955 454..528 100 -> Plus
X 19269257..19269365 529..637 100 -> Plus
X 19270622..19270999 1636..2013 100 -> Plus
X 19269721..19270550 806..1635 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:01 Download gff for BO11216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19156372..19156626 17..271 100 -> Plus
arm_X 19157166..19157347 272..453 100 -> Plus
arm_X 19157914..19157988 454..528 100 -> Plus
arm_X 19163290..19163398 529..637 100 -> Plus
arm_X 19163517..19163684 638..805 100 -> Plus
arm_X 19163754..19164583 806..1635 100 -> Plus
arm_X 19164655..19165032 1636..2013 100 -> Plus
arm_X 19165106..19165258 2014..2166 100 -> Plus
arm_X 19165316..19165487 2167..2338 100 -> Plus
arm_X 19165552..19165608 2339..2397 96   Plus

BO11216.pep Sequence

Translation from 16 to 2413

> BO11216.pep
MASSSSSNSFGGVAGVNGDLWRECVAWLTRCKVIPPDHKAAQPDAEIRIL
AMTLRDGVLLCNLVIHLDPSSLDPREFNRKPQMAQFLCSKNIKLFLDVCH
NNFGIRDADLFEPTMLYDLTNFHRVLITLSKLSQCRKVQQLHPDLIGFNL
QLSPTERSHSDEAIYKDLHSTTTDNIACNGTGYDHTNTKEEEVYQDLCAL
HRTSRSQTASSTSFEQRDYVIRELIDTESNYLDVLTALKTKFMGPLERHL
NQDELRLIFPRIRELVDIHTKFLDKLRESLTPNAKVKMAQVFLDFREPFL
IYGEFCSLLLGAIDYLADVCKKNQIIDQLVQKCERDYNVGKLQLRDILSV
PMQRILKYHLLLDKLVKETSPLHDDYRSLERAKEAMIDVSQYINEVKRDS
DHLVIIQKVKDSICDIHLLQNGNGSDLLQYGRLLLDGELHIKAHEDQKTK
LRYAFVFDKILIMVKALHIKTGDMQYTYRDSHNLADYRVEQSHSRRTIGR
DTRFKYQLLLARKSGKTAFTLYLKSEHERDKWRKALTEAMESLEPPGCQS
TDHKMEIYTFDAPTTCRHCSKFLKGRIHQGYRCKVCQISVHKGCISSTGR
CKQNPVSVPPPVCDRQLSEFNWFAGNMDRETAAHRLENRRIGTYLLRVRP
QGPSTAHETMYALSLKTDDNVIKHMKINQENSGDSMLYCLSSRRHFKTIV
ELVSYYERNDLGENFAGLNQSLQWPYKEVIATALYDYEPKAGSNQLQLRT
DCQVLVIGKDGDSKGWWRGKIGDTVGYFPKEYVQEQKLASEELASFLDH

BO11216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
Vav-PB 793 CG7893-PB 1..793 1..793 4183 100 Plus
Vav-PA 793 CG7893-PA 1..793 1..793 4183 100 Plus
Vav-PC 1001 CG7893-PC 324..1001 132..793 3296 93.2 Plus
Vav-PD 964 CG7893-PD 359..964 190..793 3109 97.7 Plus
Vav-PC 1001 CG7893-PC 1..171 1..171 905 100 Plus
Vav-PD 964 CG7893-PD 1..171 1..171 905 100 Plus
RhoGEF2-PE 2205 CG9635-PE 1183..1444 215..464 171 25.6 Plus