Clone Sequence Records
BO11220.complete Sequence
2278 bp assembled on 2009-09-17
GenBank Submission: FJ632031
> BO11220.complete
GAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGA
ACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAAC
GAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGC
CCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTAC
AAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTAC
CAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATAT
CTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGA
TCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCA
GAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACT
GGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGT
CTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGT
CGCCGAAAAGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTC
AAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGC
AGACAGGGGCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCC
AGCGGACCGGCAGCCGGAACCAGCAGCCAAGCGTCGTCGACCCAACAACA
GCAGCCATTGACCAGCACCAACGTTACCAAAAAGACTGAAAGCGCTAAAC
TAACATCCTCGACAGCCGCCCCAGCGAGCGGAGCATCTGCGTCAGCGGCT
GTACAACAGGCCCATCTGCATCAGCAGCAGGCGCAGACCACAAGCGATGC
CATTAACACCGAGAATGTACAAGCCCAGAGCCAAGGTGGCGCCCAAGGCG
TCCAAGGCGATGACGAGGACATTGATGAGGGTAGTGCCGTTGGCGGACCA
AACTCGGCCACCGGACCCAATCCCGCCTCCGCCTCTGCATCCGCCGTCCA
TGCCGGAGTTGTGGTAAAGCAGCTGGCCAGCGTTGTGGACAAATCGTCGT
CGAATCACAAACATAAGATCAAAGACAACAGCGTGTCATCAGTGGGCTCC
GAAATGGTTATTGAACCCAAAGCCGAATACGATGACGATGCGCACGATGA
GAATGTTGAGGATTTGACACTGGACGAGGAGGACATGACAATGGAGGAGC
TGGACCAGACGGCCGGCACCAGCCAGGGTGGCGAAGGATCTAGTCAAACA
TATGCAACATGGCAGCACGACAGATCTCAGGATGAACTTGGACTAATGGC
ACAGGATGCACAGCAACGGGATCCCCAAGACCTGAAGTACGACTACAAGC
ACAGCATTTTTGGCAGCGATGATGCGGATCAGGATCAATACAAGGAGCGT
TTCCACTGCGCCGTCTGCAACAAGAGTTATCTCCGCAAGCGCCATCTGCA
GCGCCATATGCGCGATGAATGCATTGGCATTCCGCCACGATTCAATTGCG
AGTTTTGCAGCTCTCGATTCCGTCGCAAGTACCACATGGTGCGCCATTTG
GTCTCCAAGCACGGTATTCCGCCGGCAATTGCACAGATGACAACGGGCAG
TGGTTCGCGTTCCTCTATCAGCGGCTCGCTAGACCTAAAGTCTGGCGGCG
GATTAGCTGGTCTTCAGCAGATGGGTGGTGGCGGCGCCGGAGGCGGCGGC
TCTACCGGTGATTGTGGGGCAAGTGTGGGCAGTGCTGGATCCCATAATGG
CTGCGAGAGTCCCATACCAGAGAACCTGTCGCTGCGCAAGGAGAACTACG
AAAACGAGAATCTTTCGGGCTCGCGGTGCACTTCGCCACTGCCACCGCAC
ATTATGCCGATACCCACGTATGGGTTGACAGGTGCCATCACTGCGATCTC
TGCCGCAGCAGCCGTGGTCGAGGAGCAAGCAGCGGCAGCAGCAGCAGCTG
CGGCCATCGCTGAGGCTCAAGCCAAGAACAACAATGAATCCGGAGGAGGA
AGATCCGAAGTCGATGACGAAGACGAGACATTGGCCGCACAAGCCGAGGC
TGTCGCAGCTCTCGGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGC
AGCACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATA
TCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTA
TAACAACAACGCAAGCTTTCTAGACCAT
BO11220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lola-RE | 2247 | CG12052-PE | 1..2244 | 17..2260 | 11220 | 100 | Plus |
lola-RD | 2247 | CG12052-PD | 1..2244 | 17..2260 | 11220 | 100 | Plus |
lola-RB | 2364 | CG12052-PB | 1..1369 | 17..1385 | 6830 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lola-RE | 3417 | CG12052-RE | 397..2647 | 17..2267 | 11225 | 99.9 | Plus |
lola-RD | 3423 | CG12052-RD | 403..2653 | 17..2267 | 11225 | 99.9 | Plus |
lola-RB | 2974 | CG12052-RB | 397..1765 | 17..1385 | 6830 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10520390..10521279 | 2267..1378 | 4420 | 99.8 | Minus |
2R | 25286936 | 2R | 10532181..10532895 | 1298..584 | 3575 | 100 | Minus |
2R | 25286936 | 2R | 10533118..10533511 | 584..191 | 1970 | 100 | Minus |
2R | 25286936 | 2R | 10533576..10533749 | 190..17 | 870 | 100 | Minus |
2R | 25286936 | 2R | 10532039..10532119 | 1379..1299 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:41:57 has no hits.
BO11220.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:21 Download gff for
BO11220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lola-RE | 400..2643 | 17..2262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:04 Download gff for
BO11220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lola-RD | 403..2646 | 17..2262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:46 Download gff for
BO11220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lola-RE | 400..2643 | 17..2262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:47 Download gff for
BO11220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lola-RD | 403..2646 | 17..2262 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:47 Download gff for
BO11220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10520395..10521277 | 1380..2262 | 99 | <- | Minus |
2R | 10532039..10532119 | 1299..1379 | 100 | <- | Minus |
2R | 10532181..10532894 | 585..1298 | 100 | <- | Minus |
2R | 10533118..10533511 | 191..584 | 100 | <- | Minus |
2R | 10533576..10533749 | 17..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:04 Download gff for
BO11220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6407900..6408782 | 1380..2262 | 99 | <- | Minus |
arm_2R | 6419544..6419624 | 1299..1379 | 100 | <- | Minus |
arm_2R | 6419686..6420399 | 585..1298 | 100 | <- | Minus |
arm_2R | 6420623..6421016 | 191..584 | 100 | <- | Minus |
arm_2R | 6421081..6421254 | 17..190 | 100 | | Minus |
BO11220.3prime Sequence
745 bp (675 high quality bases) assembled on 2006-04-19
> BO11220.3prime
ATGGTCTAGAAAGCTTGCGTTGTTGTTATAAGCAAATGGCATAGTGTTCA
TCAATCGCTCCTTGAGCAATGAATTCGATATGATCTGTAGGCCCAGCTTC
ATGTTCCACTCCTCGTTCATCAGGTGCTGCACCTTGCTGGGCGTCACCGG
TTCCGGCTTGATGCCGAGAGCTGCGACAGCCTCGGCTTGTGCGGCCAATG
TCTCGTCTTCGTCATCGACTTCGGATCTTCCTCCTCCGGATTCATTGTTG
TTCTTGGCTTGAGCCTCAGCGATGGCCGCAGCTGCTGCTGCTGCCGCTGC
TTGCTCCTCGACCACGGCTGCTGCGGCAGAGATCGCAGTGATGGCACCTG
TCAACCCATACGTGGGTATCGGCATAATGTGCGGTGGCAGTGGCGAAGTG
CACCGCGAGCCCGAAAGATTCTCGTTTTCGTAGTTCTCCTTGCGCAGCGA
CAGGTTCTCTGGTATGGGACTCTCGCAGCCATTATGGGATCCAGCACTGC
CCACACTTGCCCCACAATCACCGGTAGAGCCGCCGCCTCCGGCGCCGCCA
CCACCCATCTGCTGAAGACCAGCTAATCCGCCGCCAGACTTTAGGTCTAG
CGAGCCGCTGATAGAGGAACGCGAACCACTGCCCGTTGTCATCTGTGCAA
TTGCCGGCGGAATACCGTGCTTGGAGACCAAATGGCGCACCATGTGGTAC
TTGCGACGGAATCGAGAGCTGCAAAACTCGCAATTGAATCGTGGC
BO11220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12052-PD | 2247 | lola-RD | 1518..2244 | 745..19 | 3635 | 100 | Minus |
CG12052-PE | 2247 | lola-RE | 1518..2244 | 745..19 | 3635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lola-RE | 3417 | CG12052-RE | 1914..2647 | 745..12 | 3640 | 99.7 | Minus |
lola-RD | 3423 | CG12052-RD | 1920..2653 | 745..12 | 3640 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10520390..10521123 | 12..745 | 3640 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:05:48 has no hits.
BO11220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:19 Download gff for
BO11220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12052-PE | 1518..2247 | 15..745 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:10 Download gff for
BO11220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12052-PE | 1518..2247 | 15..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:33:07 Download gff for
BO11220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lola-RD | 1920..2661 | 6..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:57 Download gff for
BO11220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lola-RD | 1920..2661 | 6..745 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:57 Download gff for
BO11220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10520382..10521123 | 6..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:33:07 Download gff for
BO11220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6407887..6408628 | 6..745 | 99 | | Plus |
BO11220.5prime Sequence
721 bp (697 high quality bases) assembled on 2006-04-19
> BO11220.5prime
GAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGA
ACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAAC
GAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGC
CCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTAC
AAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTAC
CAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATAT
CTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGA
TCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCA
GAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACT
GGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGT
CTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGT
CGCCGAAAAGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTC
AAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGC
AGACAGGGGCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCC
CGCGGACCGGCAGCCGGAACC
BO11220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12052-PX | 1809 | lola-RX | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PG | 2676 | lola-RG | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PI | 2913 | lola-RI | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PF | 1698 | lola-RF | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PO | 2007 | lola-RO | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PJ | 2274 | lola-RJ | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PL | 1827 | lola-RL | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PR | 2676 | lola-RR | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PY | 1734 | lola-RY | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PP | 2892 | lola-RP | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PN | 2637 | lola-RN | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PK | 1641 | lola-RK | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PQ | 1812 | lola-RQ | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PS | 2163 | lola-RS | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PT | 1728 | lola-RT | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PA | 2121 | lola-RA | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PM | 1398 | lola-RM | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PH | 1557 | lola-RH | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PD | 2247 | lola-RD | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PC | 2364 | lola-RC | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PE | 2247 | lola-RE | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PW | 2316 | lola-RW | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PU | 1728 | lola-RU | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PV | 1650 | lola-RV | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PB | 2364 | lola-RB | 1..705 | 17..721 | 3500 | 99.8 | Plus |
CG12052-PZ | 1998 | lola-RZ | 1..705 | 17..721 | 3500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lola-RAA | 4623 | CG12052-RA | 607..1311 | 17..721 | 3510 | 99.9 | Plus |
lola-RZ | 2707 | CG12052-RZ | 403..1107 | 17..721 | 3510 | 99.9 | Plus |
lola-RB | 2974 | CG12052-RB | 397..1101 | 17..721 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10533118..10533511 | 584..191 | 1970 | 100 | Minus |
2R | 25286936 | 2R | 10533576..10533749 | 190..17 | 870 | 100 | Minus |
2R | 25286936 | 2R | 10532758..10532895 | 721..584 | 675 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:58:32 has no hits.
BO11220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:21 Download gff for
BO11220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12052-PS | 1..705 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:11 Download gff for
BO11220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12052-PZ | 1..705 | 17..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:32 Download gff for
BO11220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lola-RB | 393..1101 | 9..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:29:09 Download gff for
BO11220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lola-RB | 393..1101 | 9..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:29:09 Download gff for
BO11220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10533576..10533753 | 9..190 | 97 | | Minus |
2R | 10532758..10532894 | 585..721 | 99 | <- | Minus |
2R | 10533118..10533511 | 191..584 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:32 Download gff for
BO11220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6420263..6420399 | 585..721 | 99 | <- | Minus |
arm_2R | 6420623..6421016 | 191..584 | 100 | <- | Minus |
arm_2R | 6421081..6421258 | 9..190 | 97 | | Minus |
BO11220.pep Sequence
Translation from 16 to 2278
> BO11220.pep
MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVL
SACSPYFATLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQL
AALLKAAESLQIKGLSDNRTGGGVAPKPESSGHHRGGKLSGAYTLEQTKR
ARLATGGAMDTSGDVSGSREGSSSPSRRRRKVRRRSMENDAHDNSNSSVL
QAAASNQSILQQTGAGLAVSALVTTQLSSGPAAGTSSQASSTQQQQPLTS
TNVTKKTESAKLTSSTAAPASGASASAAVQQAHLHQQQAQTTSDAINTEN
VQAQSQGGAQGVQGDDEDIDEGSAVGGPNSATGPNPASASASAVHAGVVV
KQLASVVDKSSSNHKHKIKDNSVSSVGSEMVIEPKAEYDDDAHDENVEDL
TLDEEDMTMEELDQTAGTSQGGEGSSQTYATWQHDRSQDELGLMAQDAQQ
RDPQDLKYDYKHSIFGSDDADQDQYKERFHCAVCNKSYLRKRHLQRHMRD
ECIGIPPRFNCEFCSSRFRRKYHMVRHLVSKHGIPPAIAQMTTGSGSRSS
ISGSLDLKSGGGLAGLQQMGGGGAGGGGSTGDCGASVGSAGSHNGCESPI
PENLSLRKENYENENLSGSRCTSPLPPHIMPIPTYGLTGAITAISAAAAV
VEEQAAAAAAAAAIAEAQAKNNNESGGGRSEVDDEDETLAAQAEAVAALG
IKPEPVTPSKVQHLMNEEWNMKLGLQIISNSLLKERLMNTMPFAYNNNAS
FLDH
BO11220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lola-PE | 748 | CG12052-PE | 1..748 | 1..748 | 3829 | 100 | Plus |
lola-PD | 748 | CG12052-PD | 1..748 | 1..748 | 3829 | 100 | Plus |
lola-PU | 575 | CG12052-PU | 1..560 | 1..566 | 2367 | 85.7 | Plus |
lola-PT | 575 | CG12052-PT | 1..560 | 1..566 | 2367 | 85.7 | Plus |
lola-PY | 577 | CG12052-PY | 1..511 | 1..527 | 2349 | 90.1 | Plus |