Clone BO11220 Report

Search the DGRC for BO11220

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptlola-RD
Protein status:BO11220.pep: Imported from assembly
Sequenced Size:2278

Clone Sequence Records

BO11220.complete Sequence

2278 bp assembled on 2009-09-17

GenBank Submission: FJ632031

> BO11220.complete
GAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGA
ACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAAC
GAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGC
CCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTAC
AAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTAC
CAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATAT
CTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGA
TCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCA
GAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACT
GGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGT
CTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGT
CGCCGAAAAGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTC
AAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGC
AGACAGGGGCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCC
AGCGGACCGGCAGCCGGAACCAGCAGCCAAGCGTCGTCGACCCAACAACA
GCAGCCATTGACCAGCACCAACGTTACCAAAAAGACTGAAAGCGCTAAAC
TAACATCCTCGACAGCCGCCCCAGCGAGCGGAGCATCTGCGTCAGCGGCT
GTACAACAGGCCCATCTGCATCAGCAGCAGGCGCAGACCACAAGCGATGC
CATTAACACCGAGAATGTACAAGCCCAGAGCCAAGGTGGCGCCCAAGGCG
TCCAAGGCGATGACGAGGACATTGATGAGGGTAGTGCCGTTGGCGGACCA
AACTCGGCCACCGGACCCAATCCCGCCTCCGCCTCTGCATCCGCCGTCCA
TGCCGGAGTTGTGGTAAAGCAGCTGGCCAGCGTTGTGGACAAATCGTCGT
CGAATCACAAACATAAGATCAAAGACAACAGCGTGTCATCAGTGGGCTCC
GAAATGGTTATTGAACCCAAAGCCGAATACGATGACGATGCGCACGATGA
GAATGTTGAGGATTTGACACTGGACGAGGAGGACATGACAATGGAGGAGC
TGGACCAGACGGCCGGCACCAGCCAGGGTGGCGAAGGATCTAGTCAAACA
TATGCAACATGGCAGCACGACAGATCTCAGGATGAACTTGGACTAATGGC
ACAGGATGCACAGCAACGGGATCCCCAAGACCTGAAGTACGACTACAAGC
ACAGCATTTTTGGCAGCGATGATGCGGATCAGGATCAATACAAGGAGCGT
TTCCACTGCGCCGTCTGCAACAAGAGTTATCTCCGCAAGCGCCATCTGCA
GCGCCATATGCGCGATGAATGCATTGGCATTCCGCCACGATTCAATTGCG
AGTTTTGCAGCTCTCGATTCCGTCGCAAGTACCACATGGTGCGCCATTTG
GTCTCCAAGCACGGTATTCCGCCGGCAATTGCACAGATGACAACGGGCAG
TGGTTCGCGTTCCTCTATCAGCGGCTCGCTAGACCTAAAGTCTGGCGGCG
GATTAGCTGGTCTTCAGCAGATGGGTGGTGGCGGCGCCGGAGGCGGCGGC
TCTACCGGTGATTGTGGGGCAAGTGTGGGCAGTGCTGGATCCCATAATGG
CTGCGAGAGTCCCATACCAGAGAACCTGTCGCTGCGCAAGGAGAACTACG
AAAACGAGAATCTTTCGGGCTCGCGGTGCACTTCGCCACTGCCACCGCAC
ATTATGCCGATACCCACGTATGGGTTGACAGGTGCCATCACTGCGATCTC
TGCCGCAGCAGCCGTGGTCGAGGAGCAAGCAGCGGCAGCAGCAGCAGCTG
CGGCCATCGCTGAGGCTCAAGCCAAGAACAACAATGAATCCGGAGGAGGA
AGATCCGAAGTCGATGACGAAGACGAGACATTGGCCGCACAAGCCGAGGC
TGTCGCAGCTCTCGGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGC
AGCACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATA
TCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTA
TAACAACAACGCAAGCTTTCTAGACCAT

BO11220.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
lola-RE 2247 CG12052-PE 1..2244 17..2260 11220 100 Plus
lola-RD 2247 CG12052-PD 1..2244 17..2260 11220 100 Plus
lola-RB 2364 CG12052-PB 1..1369 17..1385 6830 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
lola-RE 3417 CG12052-RE 397..2647 17..2267 11225 99.9 Plus
lola-RD 3423 CG12052-RD 403..2653 17..2267 11225 99.9 Plus
lola-RB 2974 CG12052-RB 397..1765 17..1385 6830 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10520390..10521279 2267..1378 4420 99.8 Minus
2R 25286936 2R 10532181..10532895 1298..584 3575 100 Minus
2R 25286936 2R 10533118..10533511 584..191 1970 100 Minus
2R 25286936 2R 10533576..10533749 190..17 870 100 Minus
2R 25286936 2R 10532039..10532119 1379..1299 405 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:41:57 has no hits.

BO11220.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:21 Download gff for BO11220.complete
Subject Subject Range Query Range Percent Splice Strand
lola-RE 400..2643 17..2262 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:04 Download gff for BO11220.complete
Subject Subject Range Query Range Percent Splice Strand
lola-RD 403..2646 17..2262 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:46 Download gff for BO11220.complete
Subject Subject Range Query Range Percent Splice Strand
lola-RE 400..2643 17..2262 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:47 Download gff for BO11220.complete
Subject Subject Range Query Range Percent Splice Strand
lola-RD 403..2646 17..2262 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:47 Download gff for BO11220.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10520395..10521277 1380..2262 99 <- Minus
2R 10532039..10532119 1299..1379 100 <- Minus
2R 10532181..10532894 585..1298 100 <- Minus
2R 10533118..10533511 191..584 100 <- Minus
2R 10533576..10533749 17..190 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:04 Download gff for BO11220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6407900..6408782 1380..2262 99 <- Minus
arm_2R 6419544..6419624 1299..1379 100 <- Minus
arm_2R 6419686..6420399 585..1298 100 <- Minus
arm_2R 6420623..6421016 191..584 100 <- Minus
arm_2R 6421081..6421254 17..190 100   Minus

BO11220.3prime Sequence

745 bp (675 high quality bases) assembled on 2006-04-19

> BO11220.3prime
ATGGTCTAGAAAGCTTGCGTTGTTGTTATAAGCAAATGGCATAGTGTTCA
TCAATCGCTCCTTGAGCAATGAATTCGATATGATCTGTAGGCCCAGCTTC
ATGTTCCACTCCTCGTTCATCAGGTGCTGCACCTTGCTGGGCGTCACCGG
TTCCGGCTTGATGCCGAGAGCTGCGACAGCCTCGGCTTGTGCGGCCAATG
TCTCGTCTTCGTCATCGACTTCGGATCTTCCTCCTCCGGATTCATTGTTG
TTCTTGGCTTGAGCCTCAGCGATGGCCGCAGCTGCTGCTGCTGCCGCTGC
TTGCTCCTCGACCACGGCTGCTGCGGCAGAGATCGCAGTGATGGCACCTG
TCAACCCATACGTGGGTATCGGCATAATGTGCGGTGGCAGTGGCGAAGTG
CACCGCGAGCCCGAAAGATTCTCGTTTTCGTAGTTCTCCTTGCGCAGCGA
CAGGTTCTCTGGTATGGGACTCTCGCAGCCATTATGGGATCCAGCACTGC
CCACACTTGCCCCACAATCACCGGTAGAGCCGCCGCCTCCGGCGCCGCCA
CCACCCATCTGCTGAAGACCAGCTAATCCGCCGCCAGACTTTAGGTCTAG
CGAGCCGCTGATAGAGGAACGCGAACCACTGCCCGTTGTCATCTGTGCAA
TTGCCGGCGGAATACCGTGCTTGGAGACCAAATGGCGCACCATGTGGTAC
TTGCGACGGAATCGAGAGCTGCAAAACTCGCAATTGAATCGTGGC

BO11220.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12052-PD 2247 lola-RD 1518..2244 745..19 3635 100 Minus
CG12052-PE 2247 lola-RE 1518..2244 745..19 3635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
lola-RE 3417 CG12052-RE 1914..2647 745..12 3640 99.7 Minus
lola-RD 3423 CG12052-RD 1920..2653 745..12 3640 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10520390..10521123 12..745 3640 99.7 Plus
Blast to na_te.dros performed on 2015-02-11 10:05:48 has no hits.

BO11220.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:19 Download gff for BO11220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12052-PE 1518..2247 15..745 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:10 Download gff for BO11220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12052-PE 1518..2247 15..745 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:33:07 Download gff for BO11220.3prime
Subject Subject Range Query Range Percent Splice Strand
lola-RD 1920..2661 6..745 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:57 Download gff for BO11220.3prime
Subject Subject Range Query Range Percent Splice Strand
lola-RD 1920..2661 6..745 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:57 Download gff for BO11220.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10520382..10521123 6..745 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:33:07 Download gff for BO11220.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6407887..6408628 6..745 99   Plus

BO11220.5prime Sequence

721 bp (697 high quality bases) assembled on 2006-04-19

> BO11220.5prime
GAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGA
ACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAAC
GAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGC
CCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTAC
AAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTAC
CAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATAT
CTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGA
TCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCA
GAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACT
GGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGT
CTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGT
CGCCGAAAAGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTC
AAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGC
AGACAGGGGCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCC
CGCGGACCGGCAGCCGGAACC

BO11220.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12052-PX 1809 lola-RX 1..705 17..721 3500 99.8 Plus
CG12052-PG 2676 lola-RG 1..705 17..721 3500 99.8 Plus
CG12052-PI 2913 lola-RI 1..705 17..721 3500 99.8 Plus
CG12052-PF 1698 lola-RF 1..705 17..721 3500 99.8 Plus
CG12052-PO 2007 lola-RO 1..705 17..721 3500 99.8 Plus
CG12052-PJ 2274 lola-RJ 1..705 17..721 3500 99.8 Plus
CG12052-PL 1827 lola-RL 1..705 17..721 3500 99.8 Plus
CG12052-PR 2676 lola-RR 1..705 17..721 3500 99.8 Plus
CG12052-PY 1734 lola-RY 1..705 17..721 3500 99.8 Plus
CG12052-PP 2892 lola-RP 1..705 17..721 3500 99.8 Plus
CG12052-PN 2637 lola-RN 1..705 17..721 3500 99.8 Plus
CG12052-PK 1641 lola-RK 1..705 17..721 3500 99.8 Plus
CG12052-PQ 1812 lola-RQ 1..705 17..721 3500 99.8 Plus
CG12052-PS 2163 lola-RS 1..705 17..721 3500 99.8 Plus
CG12052-PT 1728 lola-RT 1..705 17..721 3500 99.8 Plus
CG12052-PA 2121 lola-RA 1..705 17..721 3500 99.8 Plus
CG12052-PM 1398 lola-RM 1..705 17..721 3500 99.8 Plus
CG12052-PH 1557 lola-RH 1..705 17..721 3500 99.8 Plus
CG12052-PD 2247 lola-RD 1..705 17..721 3500 99.8 Plus
CG12052-PC 2364 lola-RC 1..705 17..721 3500 99.8 Plus
CG12052-PE 2247 lola-RE 1..705 17..721 3500 99.8 Plus
CG12052-PW 2316 lola-RW 1..705 17..721 3500 99.8 Plus
CG12052-PU 1728 lola-RU 1..705 17..721 3500 99.8 Plus
CG12052-PV 1650 lola-RV 1..705 17..721 3500 99.8 Plus
CG12052-PB 2364 lola-RB 1..705 17..721 3500 99.8 Plus
CG12052-PZ 1998 lola-RZ 1..705 17..721 3500 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
lola-RAA 4623 CG12052-RA 607..1311 17..721 3510 99.9 Plus
lola-RZ 2707 CG12052-RZ 403..1107 17..721 3510 99.9 Plus
lola-RB 2974 CG12052-RB 397..1101 17..721 3510 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10533118..10533511 584..191 1970 100 Minus
2R 25286936 2R 10533576..10533749 190..17 870 100 Minus
2R 25286936 2R 10532758..10532895 721..584 675 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 08:58:32 has no hits.

BO11220.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:21 Download gff for BO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12052-PS 1..705 17..721 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:11 Download gff for BO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12052-PZ 1..705 17..721 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:32 Download gff for BO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
lola-RB 393..1101 9..721 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:29:09 Download gff for BO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
lola-RB 393..1101 9..721 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:29:09 Download gff for BO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10533576..10533753 9..190 97   Minus
2R 10532758..10532894 585..721 99 <- Minus
2R 10533118..10533511 191..584 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:32 Download gff for BO11220.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6420263..6420399 585..721 99 <- Minus
arm_2R 6420623..6421016 191..584 100 <- Minus
arm_2R 6421081..6421258 9..190 97   Minus

BO11220.pep Sequence

Translation from 16 to 2278

> BO11220.pep
MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVL
SACSPYFATLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQL
AALLKAAESLQIKGLSDNRTGGGVAPKPESSGHHRGGKLSGAYTLEQTKR
ARLATGGAMDTSGDVSGSREGSSSPSRRRRKVRRRSMENDAHDNSNSSVL
QAAASNQSILQQTGAGLAVSALVTTQLSSGPAAGTSSQASSTQQQQPLTS
TNVTKKTESAKLTSSTAAPASGASASAAVQQAHLHQQQAQTTSDAINTEN
VQAQSQGGAQGVQGDDEDIDEGSAVGGPNSATGPNPASASASAVHAGVVV
KQLASVVDKSSSNHKHKIKDNSVSSVGSEMVIEPKAEYDDDAHDENVEDL
TLDEEDMTMEELDQTAGTSQGGEGSSQTYATWQHDRSQDELGLMAQDAQQ
RDPQDLKYDYKHSIFGSDDADQDQYKERFHCAVCNKSYLRKRHLQRHMRD
ECIGIPPRFNCEFCSSRFRRKYHMVRHLVSKHGIPPAIAQMTTGSGSRSS
ISGSLDLKSGGGLAGLQQMGGGGAGGGGSTGDCGASVGSAGSHNGCESPI
PENLSLRKENYENENLSGSRCTSPLPPHIMPIPTYGLTGAITAISAAAAV
VEEQAAAAAAAAAIAEAQAKNNNESGGGRSEVDDEDETLAAQAEAVAALG
IKPEPVTPSKVQHLMNEEWNMKLGLQIISNSLLKERLMNTMPFAYNNNAS
FLDH

BO11220.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
lola-PE 748 CG12052-PE 1..748 1..748 3829 100 Plus
lola-PD 748 CG12052-PD 1..748 1..748 3829 100 Plus
lola-PU 575 CG12052-PU 1..560 1..566 2367 85.7 Plus
lola-PT 575 CG12052-PT 1..560 1..566 2367 85.7 Plus
lola-PY 577 CG12052-PY 1..511 1..527 2349 90.1 Plus