Clone Sequence Records
BO11223.3prime Sequence
853 bp (752 high quality bases) assembled on 2006-04-19
> BO11223.3prime
ATGGTCTAGAAAGCTTGCGGCACGCAGGGCCACAAACTGTTGGAACACTT
CCAAGATGTGTGTGTCCAGGTCGGATGTGAATAGCAGCGTTTCCAAAGTG
CTGCTGTATTTCTGAACTTGCTCATGATGCATAAGGAAGACCTGCTGCAG
TCGTCCGATTGTCCAGCGATACCAATCCGTGTCTGGATCACGGCCGTCCG
TATCGGAGCGCAGCAGATGCTCGGAGAGTATCATAATGAATCTCTGGAAG
ACGATGAGGAACAGACGCTTCTGGTTCACATTCGCTGCTTCCAATTTCTC
CTCCATGCGCTCAACCACCTCCTCGGATGGCTTGTCAGCGTGTGTGATCG
GCTTCTTCCTTTTATGCGAAGAATCATCCTCCGAATCGCTGGACGAAGAG
TCCGCCTTCGCAAGCTTCTCCTTGGCCTCGCTCAATTCGGTATTCAGCTT
GATCACGTGCTTGTTCATCTTCTTGATCGTCAGATGGAGAATTTCCCAGA
GATACAGTTTCGTGAACTCGCCGGTCATCTCCTTGGAGAAAATCCACGTG
GCCACCGCCGAACAATCGACGATTTGCAGTTTGAGCAGCTTGTCGATTAG
GACCACCATCATTTGCTGGTGCGAGGACCACAGTTCGAAAATGTTGTGCA
GAATGCAGATCTGCGCCTCCTCCGTTTCGGCCAGTGCACGGAATACCGAA
TGGAATTTCGATATGGCCGCAAAGCTGTGCGAAAACGATTTCGAGCCCAA
ATTCAGCAACGTCTGGACGAAAACATCGATCTTCAAAGCATTGAAGCTGC
CGTCGGACATCTCCTCGCCGCTATATCCGCTATTCCGTATATCCTTCAAT
ATG
BO11223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7035-PA | 2403 | Cbp80-RA | 1566..2400 | 853..19 | 4150 | 99.8 | Minus |
| CG7035-PB | 2403 | Cbp80-RB | 1566..2400 | 853..19 | 4150 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cbp80-RB | 3236 | CG7035-RB | 1846..2680 | 853..19 | 4160 | 99.9 | Minus |
| Cbp80-RA | 3017 | CG7035-RA | 1881..2715 | 853..19 | 4160 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4656662..4657071 | 853..444 | 2035 | 99.8 | Minus |
| X | 23542271 | X | 4657334..4657524 | 320..130 | 955 | 100 | Minus |
| X | 23542271 | X | 4657141..4657268 | 443..316 | 640 | 100 | Minus |
| X | 23542271 | X | 4657592..4657703 | 130..19 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:12:30 has no hits.
BO11223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:24 Download gff for
BO11223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-PB | 1566..2403 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:15 Download gff for
BO11223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7035-PB | 1566..2403 | 15..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:23:57 Download gff for
BO11223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RA | 1846..2685 | 14..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:27:27 Download gff for
BO11223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RA | 1881..2720 | 14..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:27:27 Download gff for
BO11223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4656662..4657071 | 444..853 | 99 | -> | Minus |
| X | 4657141..4657265 | 319..443 | 100 | -> | Minus |
| X | 4657336..4657524 | 130..318 | 100 | -> | Minus |
| X | 4657593..4657708 | 14..129 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:23:57 Download gff for
BO11223.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4550695..4551104 | 444..853 | 99 | -> | Minus |
| arm_X | 4551174..4551298 | 319..443 | 100 | -> | Minus |
| arm_X | 4551369..4551557 | 130..318 | 100 | -> | Minus |
| arm_X | 4551626..4551741 | 14..129 | 98 | | Minus |
BO11223.5prime Sequence
890 bp (734 high quality bases) assembled on 2006-04-19
> BO11223.5prime
GAAGTTATCAGTCGACATGAGTCGCAGGAGGGCTCACGACACGGAGGATG
AGGGCTATGATCATCGGCGCAACAAGCGTAGACGTGTGTCCGAAAACCAG
GAGATCGAGGATCGTCTGGAGTCGCTGATACTGCGGGTGGGCGAGCGTAG
CACCTCCTCCGTGGAATCGAACCTAGAGGGACTCGTCTCCGTTCTGGAGG
CCGATCTGGGCACGTTTCGCCTGAAGATCCTGCGCATCCTGTCCGACTGC
GCCGTGCGAATGCCAGAGAAGTGTACCGTTTACACCACGTTGGTGGGCCT
GCTCAATGCCAAGAACTACAAGTTTGGCGGCGAGTTCGTGGATCACATGG
TGAAGACCTTCAAGGAGTCCCTCAAGATGTGCCGCTGGGATGCCGCCCGC
TACTCGCTGCGCTTTCTGGCCGACCTGGTCAATTGCCACGTCATTTCGGC
CACCAGTCTCCTCCAGCTGCTGGACACCATGATCGATGTCTCCAACGAGG
ATACAGTGCCCCAGGTGCGTCGCGATTGGTTCGTCTTTGCTGTGCTCTCC
ACGCTACCCTGGGTGGGTCGCGATCTCTACGAGAAGAAGGAGTCTGCCCT
GGAGTCCCTGTTGCTTAGGATCGAGGTCTATCTAAACAAACGCTCAAAGA
AGCACCATAATGCGCTGAGGGTGTGGTCCTCAGACGCTCCGCATCCACAG
GAGGAGTACTTGGACTGCCTGTGGGCGCAGATACGCAAGTTGCGGCAGGA
CAATTGGGCGGAGAAGCATATACCACGACCCTATCTCGTATTCGATTCAA
TACTTTGCGAGGCACTGCAGCACAATCTGCCCACGATTGTGCCGCCGCCG
CATCACGACAACTTTGAGTATCCCATGCCCTGGGTGGTGT
BO11223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7035-PA | 2403 | Cbp80-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
| CG7035-PB | 2403 | Cbp80-RB | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cbp80-RB | 3236 | CG7035-RB | 281..1154 | 17..890 | 4370 | 100 | Plus |
| Cbp80-RA | 3017 | CG7035-RA | 316..1189 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4650431..4651262 | 59..890 | 4160 | 100 | Plus |
| X | 23542271 | X | 4650330..4650372 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:40:57 has no hits.
BO11223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:25 Download gff for
BO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-PB | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:17 Download gff for
BO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7035-PB | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:38:04 Download gff for
BO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RA | 281..1154 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:29:17 Download gff for
BO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RA | 316..1189 | 17..890 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:29:17 Download gff for
BO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4650330..4650372 | 17..59 | 100 | -> | Plus |
| X | 4650432..4651262 | 60..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:38:04 Download gff for
BO11223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4544363..4544405 | 17..59 | 100 | -> | Plus |
| arm_X | 4544465..4545295 | 60..890 | 100 | | Plus |
BO11223.complete Sequence
2434 bp assembled on 2008-01-16
GenBank Submission: FJ632032
> BO11223.complete
GAAGTTATCAGTCGACATGAGTCGCAGGAGGGCTCACGACACGGAGGATG
AGGGCTATGATCATCGGCGCAACAAGCGTAGACGTGTGTCCGAAAACCAG
GAGATCGAGGATCGTCTGGAGTCGCTGATACTGCGGGTGGGCGAGCGTAG
CACCTCCTCCGTGGAATCGAACCTAGAGGGACTCGTCTCCGTTCTGGAGG
CCGATCTGGGCACGTTTCGCCTGAAGATCCTGCGCATCCTGTCCGACTGC
GCCGTGCGAATGCCAGAGAAGTGTACCGTTTACACCACGTTGGTGGGCCT
GCTCAATGCCAAGAACTACAAGTTTGGCGGCGAGTTCGTGGATCACATGG
TGAAGACCTTCAAGGAGTCCCTCAAGATGTGCCGCTGGGATGCCGCCCGC
TACTCGCTGCGCTTTCTGGCCGACCTGGTCAATTGCCACGTCATTTCGGC
CACCAGTCTCCTCCAGCTGCTGGACACCATGATCGATGTCTCCAACGAGG
ATACAGTGCCCCAGGTGCGTCGCGATTGGTTCGTCTTTGCTGTGCTCTCC
ACGCTACCCTGGGTGGGTCGCGATCTCTACGAGAAGAAGGAGTCTGCCCT
GGAGTCCCTGTTGCTTAGGATCGAGGTCTATCTAAACAAACGCTCAAAGA
AGCACCATAATGCGCTGAGGGTGTGGTCCTCAGACGCTCCGCATCCACAG
GAGGAGTACTTGGACTGCCTGTGGGCGCAGATACGCAAGTTGCGGCAGGA
CAATTGGGCGGAGAAGCATATACCACGACCCTATCTCGTATTCGATTCAA
TACTTTGCGAGGCACTGCAGCACAATCTGCCCACGATTGTGCCGCCGCCG
CATCACGACAACTTTGAGTATCCCATGCCCTGGGTGGTGTACCGCATGTT
CGACTACACCGACTGCCCCGATGGGCCCAATCTGCCGGGTGCCCACTCAA
TAGAGCGCTTTTTGATTGAGGAGCATCTACACCATATCATTGAAACATAC
CATCACGAGCGAAAGGATTGCGCCGCCCAGCTGCTTAGCTTTCCGTACAA
GCACAAGATCCCGCTGGAGTACTGCATCGTCGAGGTGGTCTTCGCCGAGC
TCTTTCATATGCCCACGCCGCGCTATCTGGACATCTGCTACGGCTCCATT
TTGATCGAACTCTGCAAACTGCAGCCGGCCACGCTGCCCCAGGTTCTGGC
CCAGGCCACCGAGATCCTCTTTATGCGCATCGACTCGATGAACACGTCAT
GTTTCGATCGGTTCGTCAATTGGTTCTCCTATCATCTGAGCAACTTCAAG
TTCACATGGTCATGGGACGAATGGGACAGCTGTCTGCTCCTCGACGGCGA
GCATCCGCGTCCCAAATTCATCCAGGAGGTGTTGCAGAAGTGCCTACGCC
TTTCGTATCATCAGCGCATTACGGAAATGATGCCAACGACTTATGCCAAG
TTGATTCCCTTGACGCCAGTGCCCAATTACAAGTACGCCAACGAGGAGGC
AGCCAACTTGCCGGGAACAACGGTGGCCCATCAACTGGTGGTGGCCATCC
GGCAGAAGTGCACGCCCGAGGAGGTGGTCAACATATTGAAGGATATACCG
AATAGCGGATATAGCGGCGAGGAGATGTCCGACGGCAGCTTCAATGCTTT
GAAGATCGATGTTTTCGTCCAGACGTTGCTGAATTTGGGCTCGAAATCGT
TTTCGCACAGCTTTGCGGCCATATCGAAATTCCATTCGGTATTCCGTGCA
CTGGCCGAAACGGAGGAGGCGCAGATCTGCATTCTGCACAACATTTTCGA
ACTGTGGTCCTCGCACCAGCAAATGATGGTGGTCCTAATCGACAAGCTGC
TCAAACTGCAAATCGTCGATTGTTCGGCGGTGGCCACGTGGATTTTCTCC
AAGGAGATGACCGGCGAGTTCACGAAACTGTATCTCTGGGAAATTCTCCA
TCTGACGATCAAGAAGATGAACAAGCACGTGATCAAGCTGAATACCGAAT
TGAGCGAGGCCAAGGAGAAGCTTGCGAAGGCGGACTCTTCGTCCAGCGAT
TCGGAGGATGATTCTTCGCATAAAAGGAAGAAGCCGATCACACACGCTGA
CAAGCCATCCGAGGAGGTGGTTGAGCGCATGGAGGAGAAATTGGAAGCAG
CGAATGTGAACCAGAAGCGTCTGTTCCTCATCGTCTTCCAGAGATTCATT
ATGATACTCTCCGAGCATCTGCTGCGCTCCGATACGGACGGCCGTGATCC
AGACACGGATTGGTATCGCTGGACAATCGGACGACTGCAGCAGGTCTTCC
TTATGCATCATGAGCAAGTTCAGAAATACAGCAGCACTTTGGAAACGCTG
CTATTCACATCCGACCTGGACACACACATCTTGGAAGTGTTCCAACAGTT
TGTGGCCCTGCGTGCCGCAAGCTTTCTAGACCAT
BO11223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cbp80-RB | 2403 | CG7035-PB | 1..2400 | 17..2416 | 12000 | 100 | Plus |
| Cbp80-RA | 2403 | CG7035-PA | 1..2400 | 17..2416 | 12000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cbp80-RB | 3236 | CG7035-RB | 281..2680 | 17..2416 | 12000 | 100 | Plus |
| Cbp80-RA | 3017 | CG7035-RA | 316..2715 | 17..2416 | 12000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4650431..4651770 | 59..1398 | 6700 | 100 | Plus |
| X | 23542271 | X | 4656581..4657071 | 1501..1991 | 2455 | 100 | Plus |
| X | 23542271 | X | 4657334..4657524 | 2115..2305 | 955 | 100 | Plus |
| X | 23542271 | X | 4657141..4657268 | 1992..2119 | 640 | 100 | Plus |
| X | 23542271 | X | 4657592..4657703 | 2305..2416 | 560 | 100 | Plus |
| X | 23542271 | X | 4651831..4651935 | 1398..1502 | 525 | 100 | Plus |
| X | 23542271 | X | 4650330..4650372 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:50:24 has no hits.
BO11223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:48 Download gff for
BO11223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RB | 1..2403 | 17..2420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:29 Download gff for
BO11223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RB | 310..2709 | 17..2418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:02 Download gff for
BO11223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RA | 281..2680 | 17..2418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:48 Download gff for
BO11223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RB | 310..2714 | 17..2421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:35 Download gff for
BO11223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp80-RA | 316..2715 | 17..2418 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:35 Download gff for
BO11223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4657336..4657524 | 2117..2305 | 100 | -> | Plus |
| X | 4657593..4657703 | 2306..2418 | 98 | | Plus |
| X | 4650330..4650372 | 17..59 | 100 | -> | Plus |
| X | 4656583..4657071 | 1503..1991 | 100 | -> | Plus |
| X | 4650432..4651770 | 60..1398 | 100 | -> | Plus |
| X | 4651832..4651935 | 1399..1502 | 100 | -> | Plus |
| X | 4657141..4657265 | 1992..2116 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:02 Download gff for
BO11223.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4544363..4544405 | 17..59 | 100 | -> | Plus |
| arm_X | 4544465..4545803 | 60..1398 | 100 | -> | Plus |
| arm_X | 4545865..4545968 | 1399..1502 | 100 | -> | Plus |
| arm_X | 4550616..4551104 | 1503..1991 | 100 | -> | Plus |
| arm_X | 4551174..4551298 | 1992..2116 | 100 | -> | Plus |
| arm_X | 4551369..4551557 | 2117..2305 | 100 | -> | Plus |
| arm_X | 4551626..4551736 | 2306..2418 | 98 | | Plus |
BO11223.pep Sequence
Translation from 16 to 2434
> BO11223.pep
MSRRRAHDTEDEGYDHRRNKRRRVSENQEIEDRLESLILRVGERSTSSVE
SNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKN
YKFGGEFVDHMVKTFKESLKMCRWDAARYSLRFLADLVNCHVISATSLLQ
LLDTMIDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLL
RIEVYLNKRSKKHHNALRVWSSDAPHPQEEYLDCLWAQIRKLRQDNWAEK
HIPRPYLVFDSILCEALQHNLPTIVPPPHHDNFEYPMPWVVYRMFDYTDC
PDGPNLPGAHSIERFLIEEHLHHIIETYHHERKDCAAQLLSFPYKHKIPL
EYCIVEVVFAELFHMPTPRYLDICYGSILIELCKLQPATLPQVLAQATEI
LFMRIDSMNTSCFDRFVNWFSYHLSNFKFTWSWDEWDSCLLLDGEHPRPK
FIQEVLQKCLRLSYHQRITEMMPTTYAKLIPLTPVPNYKYANEEAANLPG
TTVAHQLVVAIRQKCTPEEVVNILKDIPNSGYSGEEMSDGSFNALKIDVF
VQTLLNLGSKSFSHSFAAISKFHSVFRALAETEEAQICILHNIFELWSSH
QQMMVVLIDKLLKLQIVDCSAVATWIFSKEMTGEFTKLYLWEILHLTIKK
MNKHVIKLNTELSEAKEKLAKADSSSSDSEDDSSHKRKKPITHADKPSEE
VVERMEEKLEAANVNQKRLFLIVFQRFIMILSEHLLRSDTDGRDPDTDWY
RWTIGRLQQVFLMHHEQVQKYSSTLETLLFTSDLDTHILEVFQQFVALRA
ASFLDH
BO11223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cbp80-PB | 800 | CG7035-PB | 1..800 | 1..800 | 4223 | 100 | Plus |
| Cbp80-PA | 800 | CG7035-PA | 1..800 | 1..800 | 4223 | 100 | Plus |
| CG7907-PC | 753 | CG7907-PC | 1..750 | 1..797 | 1092 | 32.7 | Plus |
| CG7907-PB | 753 | CG7907-PB | 1..750 | 1..797 | 1092 | 32.7 | Plus |
