Clone Sequence Records
BO11224.3prime Sequence
838 bp (711 high quality bases) assembled on 2006-04-19
> BO11224.3prime
ATGGTCTAGAAAGCTTGCGCTGGTGCTGGCCTGCGTCTGCAACACATTGG
CGGAAGCGGACGATGAGGCACTAGCGGCGGTCACGGCGACGGGCGAGAGC
ACACTGGCTCCAGGGAAGTGGCACGGGCACGCAGGATTGGGCATGTGATT
CGCCTGACTGTTCAGCTTGCGGGTGAGCGTCTGCCAGTATTCGATTTGGG
CGTTGATCAGGTCGATTTTCCGCTTGCTCTCCTCGATCCTCAGCGAATTC
ATCAGCTCCTGGTGCTGGCTCCTCGTCCCACCGCTGCCACTTCCTCCGCT
GCCCGACGTGTGTGCCCCGCCGATCCCCAGGCCCACGCCGCTGTTGTTGG
CACTGCTCCCGCCGCTTCCGGCTCCGGATCCGCTGCTGTTCAAGGCGCTG
CACACTGTGCCCGCCACTGCCAGTCCGTTGTACCCGTTGAAACTGCCCGC
CGCCCCGATGGCCACGCCTCCTGTCTTGTCCCGCGCCAAATGGTTGTGCG
TCATCTGTGCGTGGTGGCCGCCGTTGAGCAACAGTTGCACTCCATTGGAG
GCCACCGCGGAATTGCTTGTGCTGCCGGCAGTGTGGTGGCTATTGTTGAT
GTTTCCGCGCTGAAGGCGTGGCAACTGCAGAGTGGGAGGGGTGCGGCGGC
TGCTAATGGCGACCGATGAAGATGGAGCGGCGGACCCATAGGCGGCATTG
ATGGCCGCCTGCAGAGACTGAGCCGGATTCACGGCGGACAATCCTAGGCC
GTTCAGCAGCGTGTGCTGCTGCACTTGCTCCGCTGTGAGCGGCAACACTC
CACTGGCACTGGAGCCGCCATTGCTGGCCGCTGATAGG
BO11224.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-PD | 1719 | CG32813-RD | 897..1716 | 838..19 | 4075 | 99.8 | Minus |
| CG32813-PE | 1887 | CG32813-RE | 1065..1884 | 838..19 | 4075 | 99.8 | Minus |
| CG32813-PC | 1881 | CG32813-RC | 1059..1878 | 838..19 | 4075 | 99.8 | Minus |
| CG32813-PB | 1719 | CG32813-RB | 897..1716 | 838..19 | 4075 | 99.8 | Minus |
| CG32813-PA | 1890 | CG32813-RA | 1068..1887 | 838..19 | 4075 | 99.8 | Minus |
| CG32813-PF | 2193 | CG32813-RF | 1068..1862 | 838..44 | 3950 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RK | 4058 | CG32813-RK | 1958..2777 | 838..19 | 4085 | 99.9 | Minus |
| CG32813-RJ | 3254 | CG32813-RJ | 1154..1973 | 838..19 | 4085 | 99.9 | Minus |
| CG32813-RI | 3726 | CG32813-RI | 1991..2810 | 838..19 | 4085 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1390743..1391562 | 838..19 | 4085 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:28:40 has no hits.
BO11224.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:26 Download gff for
BO11224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-PC | 1059..1881 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:18 Download gff for
BO11224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-PA | 1068..1890 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:26:36 Download gff for
BO11224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RI | 1991..2810 | 19..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:29:07 Download gff for
BO11224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RI | 1991..2810 | 19..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:29:07 Download gff for
BO11224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1390743..1391562 | 19..838 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:26:36 Download gff for
BO11224.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1284776..1285595 | 19..838 | 99 | | Minus |
BO11224.5prime Sequence
769 bp (721 high quality bases) assembled on 2006-04-19
> BO11224.5prime
GAAGTTATCAGTCGAACATGGTCGCTGGTCAGTGTGTCGCTGGTCACTGT
GTGGAGCACAGATGGTGGCCACTTCGGCCCTCTTCGCTGCCGATAGAAGG
GATAGAAGGCCCATGCAAAGCTCCAGAGAATAACACAGTGTGCATTACTT
TCTCCCCCAGCTTCACGACGTCTTGCAAACGGTTGAAAATGGAGAAGACT
CCCCGGTACACGCAGCGGGAGCGGAACATGGTGTTGAGCTACGCGGCGCA
GTACAAGGATGTGATCGAGAACAAGCGCACGGACGCGGAGTCCAACCGCA
AGAAGGACGAGGTGTGGCTGCAGATCGCCAAGGAGTTCAACTCGCGGGTC
TACCACCAGCGCAGCGCCAAGCAGCTGCGCCAGCTTTACAAGAACATGAA
GCTGCTGCTCAAAAAGGACCTATGCGGCGAGGACAAGAGCAACCATTCGT
TCATGGACCTGCTCAACACGCTGTCGCACCAGGAGTCCGTGGCCCAGTAC
ATTGCCGAGCAGCTGTCGCCGGAGGGCGCGGGCGGTGGCGGCGGCGGCGG
TAAGCAAGGCGGCGCGGGCAACGGAGGCGGAAACGGACACCAATCGGACG
ACTACGACGACTCCAAGATGCCCCACTACCACGAGGGCATGGACACGGAC
GTGATCCTTATCAAGTCGGAGACAATTAGCGACAACGAGCAGACGGACAA
TGGCATGGACTGCCTGGACGAGGACGATGACGACGACTGCTTGAGCCACA
AGGCGCCGGAGGTGTGCCT
BO11224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-PA | 1890 | CG32813-RA | 1..752 | 18..769 | 3760 | 100 | Plus |
| CG32813-PF | 2193 | CG32813-RF | 1..752 | 18..769 | 3760 | 100 | Plus |
| CG32813-PE | 1887 | CG32813-RE | 138..749 | 158..769 | 3060 | 100 | Plus |
| CG32813-PC | 1881 | CG32813-RC | 135..743 | 161..769 | 3045 | 100 | Plus |
| CG32813-PD | 1719 | CG32813-RD | 1..581 | 189..769 | 2905 | 100 | Plus |
| CG32813-PB | 1719 | CG32813-RB | 1..581 | 189..769 | 2905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RK | 4058 | CG32813-RK | 891..1642 | 18..769 | 3760 | 100 | Plus |
| CG32813-RN | 3585 | CG32813-RN | 557..1169 | 157..769 | 3065 | 100 | Plus |
| CG32813-RL | 3484 | CG32813-RL | 456..1068 | 157..769 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1389458..1390057 | 18..617 | 3000 | 100 | Plus |
| X | 23542271 | X | 1390274..1390427 | 616..769 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:03:36 has no hits.
BO11224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:27 Download gff for
BO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-PA | 1..752 | 18..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:20 Download gff for
BO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-PF | 1..752 | 18..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:53:59 Download gff for
BO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RK | 889..1642 | 13..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:15 Download gff for
BO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RK | 889..1642 | 13..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:15 Download gff for
BO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1390276..1390427 | 618..769 | 100 | | Plus |
| X | 1389456..1390057 | 13..617 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:53:59 Download gff for
BO11224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1283489..1284090 | 13..617 | 99 | -> | Plus |
| arm_X | 1284309..1284460 | 618..769 | 100 | | Plus |
BO11224.complete Sequence
1922 bp assembled on 2008-08-14
GenBank Submission: KX799668
> BO11224.complete
GAAGTTATCAGTCGAACATGGTCGCTGGTCAGTGTGTCGCTGGTCACTGT
GTGGAGCACAGATGGTGGCCACTTCGGCCCTCTTCGCTGCCGATAGAAGG
GATAGAAGGCCCATGCAAAGCTCCAGAGAATAACACAGTGTGCATTACTT
TCTCCCCCAGCTTCACGACGTCTTGCAAACGGTTGAAAATGGAGAAGACT
CCCCGGTACACGCAGCGGGAGCGGAACATGGTGTTGAGCTACGCGGCGCA
GTACAAGGATGTGATCGAGAACAAGCGCACGGACGCGGAGTCCAACCGCA
AGAAGGACGAGGTGTGGCTGCAGATCGCCAAGGAGTTCAACTCGCGGGTC
TACCACCAGCGCAGCGCCAAGCAGCTGCGCCAGCTTTACAAGAACATGAA
GCTGCTGCTCAAAAAGGACCTATGCGGCGAGGACAAGAGCAACCATTCGT
TCATGGACCTGCTCAACACGCTGTCGCACCAGGAGTCCGTGGCCCAGTAC
ATTGCCGAGCAGCTGTCGCCGGAGGGCGCGGGCGGTGGCGGCGGCGGCGG
TAAGCAAGGCGGCGCGGGCAACGGAGGCGGAAACGGACACCAATCGGACG
ACTACGACGACTCCAAGATGCCCCACTACCACGAGGGCATGGACACGGAC
GTGATCCTTATCAAGTCGGAGACAATTAGCGACAACGAGCAGACGGACAA
TGGCATGGACTGCCTGGACGAGGACGATGACGACGACTGCTTGAGCCACA
AGGCGCCGGAGGTGTGCCTCGAGGAGGAGGACGACGTGCTCTTTCCAACG
GACGTGCGCCAGCTGCAGCAGGTGGGATCGTCCGGAGCCGCCGGCGGTGG
TGTCTCCGGAGGCTCCCTTCCCGGAAACATGTCTAGCAACGGGATTACCG
AAACCAGTCGCCGCGCCGCAAGCTCGCCCGTGTGCTCCACGAAGACCTCG
ATTAGTTCCAGCGGGAGCTACGCATCAGCGCCCAAACCGGACATCACTAT
CCAGACCGTGGGCCACATACGCGTGGGCAGCTTTGCCAACATCAACAAGA
CGCTGCAGAACGGCGGCTCCGGCACAGGAGCTGTCCTATCAGCGGCCAGC
AATGGCGGCTCCAGTGCCAGTGGAGTGCTGCCGCTCACAGCGGAGCAAGT
GCAGCAGCACACGCTGCTGAACGGCCTAGGATTGTCCGCCGTGAATCCGG
CTCAGTCTCTGCAGGCGGCCATCAATGCCGCCTATGGGTCCGCCGCTCCA
TCTTCATCGGTCGCCATTAGCAGCCGCCGCACCCCTCCCACTCTGCAGTT
GCCACGCCTTCAGCGCGGAAACATCAACAATAGCCACCACACTGCCGGCA
GCACAAGCAATTCCGCGGTGGCCTCCAATGGAGTGCAACTGTTGCTCAAC
GGCGGCCACCACGCACAGATGACGCACAACCATTTGGCGCGGGACAAGAC
AGGAGGCGTGGCCATCGGGGCGGCGGGCAGTTTCAACGGGTACAACGGAC
TGGCAGTGGCGGGCACAGTGTGCAGCGCCTTGAACAGCAGCGGATCCGGA
GCCGGAAGCGGCGGGAGCAGTGCCAACAACAGCGGCGTGGGCCTGGGGAT
CGGCGGGGCACACACGTCGGGCAGCGGAGGAAGTGGCAGCGGTGGGACGA
GGAGCCAGCACCAGGAGCTGATGAATTCGCTGAGGATCGAGGAGAGCAAG
CGGAAAATCGACCTGATCAACGCCCAAATCGAATACTGGCAGACGCTCAC
CCGCAAGCTGAACAGTCAGGCGAATCACATGCCCAATCCTGCGTGCCCGT
GCCACTTCCCTGGAGCCAGTGTGCTCTCGCCCGTCGCCGTGACCGCCGCT
AGTGCCTCATCGTCCGCTTCCGCCAATGTGTTGCAGACGCAGGCCAGCAC
CAGCGCAAGCTTTCTAGACCAT
BO11224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RK | 1719 | CG32813-PK | 1..1716 | 189..1904 | 8580 | 100 | Plus |
| CG32813-RJ | 1719 | CG32813-PJ | 1..1716 | 189..1904 | 8580 | 100 | Plus |
| CG32813-RI | 1719 | CG32813-PI | 1..1716 | 189..1904 | 8580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RK | 4058 | CG32813-RK | 891..2777 | 18..1904 | 9435 | 100 | Plus |
| CG32813-RN | 3585 | CG32813-RN | 557..2304 | 157..1904 | 8740 | 100 | Plus |
| CG32813-RL | 3484 | CG32813-RL | 456..2203 | 157..1904 | 8740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1390274..1391562 | 616..1904 | 6445 | 100 | Plus |
| X | 23542271 | X | 1389458..1390057 | 18..617 | 3000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:43:19 has no hits.
BO11224.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:35 Download gff for
BO11224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RA | 798..2686 | 17..1906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:18 Download gff for
BO11224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RK | 889..2777 | 17..1906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-03 17:33:40 Download gff for
BO11224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RA | 798..2686 | 13..1904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:52 Download gff for
BO11224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RK | 889..2777 | 17..1906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:52 Download gff for
BO11224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1389456..1390057 | 17..617 | 99 | -> | Plus |
| X | 1390276..1391562 | 618..1906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:18 Download gff for
BO11224.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1283489..1284090 | 17..617 | 99 | -> | Plus |
| arm_X | 1284309..1285595 | 618..1906 | 99 | | Plus |
BO11224.pep Sequence
Translation from 17 to 1922
> BO11224.pep
MVAGQCVAGHCVEHRWWPLRPSSLPIEGIEGPCKAPENNTVCITFSPSFT
TSCKRLKMEKTPRYTQRERNMVLSYAAQYKDVIENKRTDAESNRKKDEVW
LQIAKEFNSRVYHQRSAKQLRQLYKNMKLLLKKDLCGEDKSNHSFMDLLN
TLSHQESVAQYIAEQLSPEGAGGGGGGGKQGGAGNGGGNGHQSDDYDDSK
MPHYHEGMDTDVILIKSETISDNEQTDNGMDCLDEDDDDDCLSHKAPEVC
LEEEDDVLFPTDVRQLQQVGSSGAAGGGVSGGSLPGNMSSNGITETSRRA
ASSPVCSTKTSISSSGSYASAPKPDITIQTVGHIRVGSFANINKTLQNGG
SGTGAVLSAASNGGSSASGVLPLTAEQVQQHTLLNGLGLSAVNPAQSLQA
AINAAYGSAAPSSSVAISSRRTPPTLQLPRLQRGNINNSHHTAGSTSNSA
VASNGVQLLLNGGHHAQMTHNHLARDKTGGVAIGAAGSFNGYNGLAVAGT
VCSALNSSGSGAGSGGSSANNSGVGLGIGGAHTSGSGGSGSGGTRSQHQE
LMNSLRIEESKRKIDLINAQIEYWQTLTRKLNSQANHMPNPACPCHFPGA
SVLSPVAVTAASASSSASANVLQTQASTSASFLDH
BO11224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-PK | 572 | CG32813-PK | 1..572 | 58..629 | 2938 | 100 | Plus |
| CG32813-PJ | 572 | CG32813-PJ | 1..572 | 58..629 | 2938 | 100 | Plus |
| CG32813-PI | 572 | CG32813-PI | 1..572 | 58..629 | 2938 | 100 | Plus |
| CG32813-PN | 572 | CG32813-PN | 1..572 | 58..629 | 2938 | 100 | Plus |
| CG32813-PM | 572 | CG32813-PM | 1..572 | 58..629 | 2938 | 100 | Plus |
