Clone BO11228 Report

Search the DGRC for BO11228

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG31211-RA
Protein status:BO11228.pep: Imported from assembly
Sequenced Size:2656

Clone Sequence Records

BO11228.complete Sequence

2656 bp assembled on 2009-09-17

GenBank Submission: FJ632033

> BO11228.complete
GAAGTTATCAGTCGACATGTTTCCTGGTGGAAACGGAAACGCCGATTTGG
GCTACAACAAGCATGCCCACGTCCATGGACTTGGACAACATGGCCATGGG
CACAACCATAATCACAATCAGTTCCTGGCGCAGCCCCCACCACCCCCCAC
ACATTTTTCACTGCCCTCCGGGGGCGGTCAGGGCATGGTGACGCCCATGG
TAGCCGCCGGCCTGCCGCTCGCCATGCAGGGTGGCGTTGGCATCGATTGG
GCGCAGCTCGCCCAGCAATGGATCCACATGCGGGACGCTACTCCGGTGCC
CATGCCCCTGGCCCCTCCGCCGCCCATCATCAGCAATTTGCGAGAATACC
ACCAGCAGACGCTAGCAATGCCGGTGCCCAGTGTGGTCAGGGCGGGATTT
CCGCAACTAGAGGAGCACGGCGAGGCGGATATGGACATGGACGATGAGAA
TGATCGGGGACATAGCACTGAGACACCCCCACCGCCAGCACCTTTGGTTA
CGCAATCCCAATGGCTGGCGGGCACCGAAGTGGCTGGTCAGATCCCAGAC
GCCTCCAACGGAGCGGCTGTCACGCTGGGCAAGCAGCCATGGACCGGGTG
GCAAATGCAGACCGACAAATCAGGCAATTCCACGGCGCATATACCATCTC
TGCTGAAGCTGAACGTGAGCAATCCCAATGAGCCGCACCAACAGCTGCAG
TTGCAGTTGCAAGCGCATCAGCAGCAGCAGCAGCAGCATGCTCCCCAACC
AACGCATCCACACCATCCACCAGCACATCAGCCGCATGCACATCCACACC
ACCTAACACCACATACACACCTGCCGCCACAGCACACACAGCAGACGCAT
GCGGAAAGCGGAAGTAGCGGGGCTAGCAGTGAGATCGATGCAAACAAACG
GAAAATGTTGCCAGCTTGGATAAGAGAGGGCCTGGAGAAAATGGAGCGGG
AAAAGCAGCGGCAACTAGAGCGCCAGCAATCCTCCATGACCACGCCAGAT
GTTGAGGTCAACCATGTTAAGCAAGTATCAAGCAAAACACTAACCACACC
TGGTAATCTTTTGAACATCGCGAACGTGGCTAGCGACAGCGAAGATTCCA
TTGACGTGCCTGTGGAGGCGCGTGGAGAACTAAAGGTGCAGCAAATAGGT
AATGAATTGATTAGTAAGGACGACGATCGAAGCAGCAGCAGCAGCGAAGA
GCCAGAGTCGGAGCTGCATGGAGCCATCGAAACCGGCAATCGGACAGTGG
CGGAGCACGTGAGAATGGCTACCGTAAACGATGTCAATGGTAAAAACTAC
GAAGAAAGACTGGCGGATCTGATGCTTGTGGTGCGTCGGACACTAACCGA
AATCCTGCTGGAAACCACGAACGAAGAGATTGCAGCCATTGCAGGCGAGA
CTCTAAAAGCACACCGTGCGAAAGCGTCATCAGCCCAAGTGATTCGCAAA
AGCGCCTTGTCCTCCATTACCGGCAACTTGGGTTTAGCTGCCTATGGCGA
TTCTTCCAGCGAAACCGAGGATGATGAGGATGATGAAGATGAGCGTCAAG
CGGGCGCTGGAAAGGATGCCGAAAAAAGCGCGCAGCTAAGCGCGGAGGAG
TTGAAAGCTCGCATAAGGCGCAGCAAACGATCCTTCGAGAAAGTCATTGA
CGACATTGAGGATCGAGTGGCCAAGCAAGAGCTGCTTGATGAGCAAACAC
TGCTGCGACATCGCAAGCGGGAGCTAGAACGCTCCGTAACTGGTGGTGGT
GAGCATCGTCGACCGGCGGCCAATCCAGAACCGCCCAGTGAGTCGGCTAG
TCAAGCAACCCAGGAAAAGCATCAGCAGTCAAATGGCAAAAGACTCAGTC
GCAAGGAACGGACCACCCGCTTTAGCGACAACAAGGACGGCAAACAGCAG
TCGCAGAGCTTCGTGCAACAAGTAGTGGCGACCGCTGTGGTGCCACCACC
CGGAAGCCTAAGCAATAGCAGCCCACAAAAGCTGAAGCCCGTTCCCAATC
CGGCCACTAATCTACTGCAGATGCCGGAGTCGGTGGCCACCATGCTGACT
GCGGCTGACAAGGCGCTGCACAAGGCCAACAAGTCGTCGCATAAAAAAAG
CAAGCGCCGCCACTCGTCCCCCTCGTCATCGTCTAGCAGCAGTGGGAGCA
GCTCTAGCAGCGATAGCGACGACAGTAGCAGCACCTCGAGCGGATCCAAA
ACTTCAGGCAGCCGCAGCAAGCGATCCAGTCGGCATGGACACCGCAGCCA
CCACAGCAGCAGTCGGAGCAAATACGAACGTCGCGATCGCGACAGAGAAA
GGGAGCGGGCGCGGGAGCGAGAGCGGGACCGTGATAGGAGTCATCGCCAG
CATCGTAGTAGCCAGCTTAGTGGAAGTCACCACCAGAAACAGCGCCGACA
TCGCGAGTCCAGCCATTCAGGCGAAGATGCTGGCGGTAGCAGCAGTTACC
ACCGCTCCTCGCGGCAGAGCAGCAGCCGTAGCCATGATCATGGCAGCAAC
CGTAGCCATGATCACGGCAGCAGCAGCAGCGGACGGAAGCGGCACCGCAC
GAGATCCCGCTCCAAGTCGCGAAGCACTCACCACTCCAGCTCGAAAGCAT
ACTCCTCCACTTCCGCGTCGCATCCGCGCAAGCGCCATGCAAGCTTTCTA
GACCAT

BO11228.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31211-RA 2625 CG31211-PA 1..2622 17..2638 13110 100 Plus
CG31211-RB 2682 CG31211-PB 1..1820 17..1836 9100 100 Plus
CG31211-RC 1545 CG31211-PC 1..1465 17..1481 7325 100 Plus
CG31211-RB 2682 CG31211-PB 1876..2679 1835..2638 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31211-RA 2870 CG31211-RA 126..2747 17..2638 13110 100 Plus
CG31211-RB 2927 CG31211-RB 126..1945 17..1836 9100 100 Plus
CG31211-RC 2899 CG31211-RC 126..1590 17..1481 7325 100 Plus
CG31211-RB 2927 CG31211-RB 2001..2804 1835..2638 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11953112..11953915 1835..2638 4020 100 Plus
3R 32079331 3R 11949805..11950354 17..566 2750 100 Plus
3R 32079331 3R 11950426..11950784 566..924 1795 100 Plus
3R 32079331 3R 11951249..11951492 1078..1321 1220 100 Plus
3R 32079331 3R 11952827..11953056 1607..1836 1150 100 Plus
3R 32079331 3R 11950856..11951012 923..1079 785 100 Plus
3R 32079331 3R 11952640..11952766 1481..1607 635 100 Plus
3R 32079331 3R 11951722..11951825 1321..1424 520 100 Plus
3R 32079331 3R 11952178..11952240 1421..1483 315 100 Plus
Blast to na_te.dros performed 2014-11-28 01:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6866..7016 2134..2282 146 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2396 2469..2565 118 65.3 Plus

BO11228.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:19 Download gff for BO11228.complete
Subject Subject Range Query Range Percent Splice Strand
CG31211-RA 132..2747 23..2640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:52 Download gff for BO11228.complete
Subject Subject Range Query Range Percent Splice Strand
CG31211-RA 132..2747 23..2640 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:26 Download gff for BO11228.complete
Subject Subject Range Query Range Percent Splice Strand
CG31211-RA 132..2747 23..2640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:36 Download gff for BO11228.complete
Subject Subject Range Query Range Percent Splice Strand
CG31211-RA 132..2747 23..2640 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:36 Download gff for BO11228.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11952641..11952765 1482..1606 100 -> Plus
3R 11952827..11953055 1607..1835 100 -> Plus
3R 11951723..11951825 1322..1424 100 -> Plus
3R 11952182..11952238 1425..1481 100 -> Plus
3R 11949811..11950354 23..566 100 -> Plus
3R 11950427..11950784 567..924 100 -> Plus
3R 11950858..11951011 925..1078 100 -> Plus
3R 11951250..11951492 1079..1321 100 -> Plus
3R 11953113..11953915 1836..2640 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:52 Download gff for BO11228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7777445..7777547 1322..1424 100 -> Plus
arm_3R 7777904..7777960 1425..1481 100 -> Plus
arm_3R 7778363..7778487 1482..1606 100 -> Plus
arm_3R 7775533..7776076 23..566 100 -> Plus
arm_3R 7776149..7776506 567..924 100 -> Plus
arm_3R 7776580..7776733 925..1078 100 -> Plus
arm_3R 7776972..7777214 1079..1321 100 -> Plus
arm_3R 7778549..7778777 1607..1835 100 -> Plus
arm_3R 7778835..7779637 1836..2640 99   Plus

BO11228.3prime Sequence

709 bp (679 high quality bases) assembled on 2006-04-19

> BO11228.3prime
ATGGTCTAGAAAGCTTGCATGGCGCTTGCGCGGATGCGACGCGGAAGTGG
AGGAGTATGCTTTCGAGCTGGAGTGGTGAGTGCTTCGCGACTTGGAGCGG
GATCTCGTGCGGTGCCGCTTCCGTCCGCTGCTGCTGCTGCCGTGATCATG
GCTACGGTTGCTGCCATGATCATGGCTACGGCTGCTGCTCTGCCGCGAGG
AGCGGTGGTAACTGCTGCTACCGCCAGCATCTTCGCCTGAATGGCTGGAC
TCGCGATGTCGGCGCTGTTTCTGGTGGTGACTTCCACTAAGCTGGCTACT
ACGATGCTGGCGATGACTCCTATCACGGTCCCGCTCTCGCTCCCGCGCCC
GCTCCCTTTCTCTGTCGCGATCGCGACGTTCGTATTTGCTCCGACTGCTG
CTGTGGTGGCTGCGGTGTCCATGCCGACTGGATCGCTTGCTGCGGCTGCC
TGAAGTTTTGGATCCGCTCGAGGTGCTGCTACTGTCGTCGCTATCGCTGC
TAGAGCTGCTCCCACTGCTGCTAGACGATGACGAGGGGGACGAGTGGCGG
CGCTTGCTTTTTTTATGCGACGACTTGTTGGCCTTGTGCAGCGCCTTGTC
AGCCGCAGTCAGCATGGTGGCCACCGACTCCGGCATCTGCAGTAGATTAG
TGGCCGGATTGTGAACGGGCTTCAGCTTTTGTGGGCTGCTATTGCTTAGG
CTTCCGGGT

BO11228.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31211-PA 2625 CG31211-RA 1932..2622 709..19 3430 99.8 Minus
CG31211-PB 2682 CG31211-RB 1989..2679 709..19 3430 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31211-RC 2899 CG31211-RC 2086..2776 709..19 3440 99.9 Minus
CG31211-RB 2927 CG31211-RB 2114..2804 709..19 3440 99.9 Minus
CG31211-RA 2870 CG31211-RA 2057..2747 709..19 3440 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11953225..11953915 709..19 3440 99.9 Minus
Blast to na_te.dros performed 2015-02-06 18:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6866..7016 523..375 146 60.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2396 188..92 118 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2466 279..127 118 57.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6857 224..127 109 61.8 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 144..203 182..121 107 66.1 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9174..9233 182..121 107 66.1 Minus

BO11228.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:30 Download gff for BO11228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31211-PB 1989..2682 15..709 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:24 Download gff for BO11228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31211-PB 1989..2682 15..709 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:38:31 Download gff for BO11228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31211-RA 2057..2751 14..709 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:42:02 Download gff for BO11228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31211-RA 2057..2751 14..709 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:42:02 Download gff for BO11228.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11953225..11953919 14..709 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:38:31 Download gff for BO11228.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7778947..7779641 14..709 99   Minus

BO11228.5prime Sequence

794 bp (730 high quality bases) assembled on 2006-04-19

> BO11228.5prime
GAAGTTATCAGTCGACATGTTTCCTGGTGGAAACGGAAACGCCGATTTGG
GCTACAACAAGCATGCCCACGTCCATGGACTTGGACAACATGGCCATGGG
CACAACCATAATCACAATCAGTTCCTGGCGCAGCCCCCACCACCCCCCAC
ACATTTTTCACTGCCCTCCGGGGGCGGTCAGGGCATGGTGACGCCCATGG
TAGCCGCCGGCCTGCCGCTCGCCATGCAGGGTGGCGTTGGCATCGATTGG
GCGCAGCTCGCCCAGCAATGGATCCACATGCGGGACGCTACTCCGGTGCC
CATGCCCCTGGCCCCTCCGCCGCCCATCATCAGCAATTTGCGAGAATACC
ACCAGCAGACGCTAGCAATGCCGGTGCCCAGTGTGGTCAGGGCGGGATTT
CCGCAACTAGAGGAGCACGGCGAGGCGGATATGGACATGGACGATGAGAA
TGATCGGGGACATAGCACTGAGACACCCCCACCGCCAGCACCTTTGGTTA
CGCAATCCCAATGGCTGGCGGGCACCGAAGTGGCTGGTCAGATCCCAGAC
GCCTCCAACGGAGCGGCTGTCACGCTGGGCAAGCAGCCATGGACCGGGTG
GCAAATGCAGACCGACAAATCAGGCAATTCCACGGCGCATATACCATCTC
TGCTGAAGCTGAACGTGAGCAATCCCAATGAGCCGCACCAACAGCTGCAG
TTGCAGTTGCAAGCGCATCAGCAGCAGCAGCAGCAGCATGCTCCCCAACC
AACGCATCCACACCATCCACCAGCACATCAGCCGCATGCACATC

BO11228.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31211-PA 2625 CG31211-RA 1..778 17..794 3890 100 Plus
CG31211-PB 2682 CG31211-RB 1..778 17..794 3890 100 Plus
CG31211-PC 1545 CG31211-RC 1..778 17..794 3890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31211-RC 2899 CG31211-RC 126..903 17..794 3890 100 Plus
CG31211-RB 2927 CG31211-RB 126..903 17..794 3890 100 Plus
CG31211-RA 2870 CG31211-RA 126..903 17..794 3890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11949805..11950354 17..566 2750 100 Plus
3R 32079331 3R 11950426..11950654 566..794 1145 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:48:36 has no hits.

BO11228.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:31 Download gff for BO11228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31211-PB 1..778 17..794 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:25 Download gff for BO11228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31211-PC 1..778 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:05:18 Download gff for BO11228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31211-RA 115..903 6..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:39:13 Download gff for BO11228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31211-RA 115..903 6..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:39:13 Download gff for BO11228.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11949794..11950354 6..566 99 -> Plus
3R 11950427..11950654 567..794 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:05:18 Download gff for BO11228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7775516..7776076 6..566 99 -> Plus
arm_3R 7776149..7776376 567..794 100   Plus

BO11228.pep Sequence

Translation from 16 to 2656

> BO11228.pep
MFPGGNGNADLGYNKHAHVHGLGQHGHGHNHNHNQFLAQPPPPPTHFSLP
SGGGQGMVTPMVAAGLPLAMQGGVGIDWAQLAQQWIHMRDATPVPMPLAP
PPPIISNLREYHQQTLAMPVPSVVRAGFPQLEEHGEADMDMDDENDRGHS
TETPPPPAPLVTQSQWLAGTEVAGQIPDASNGAAVTLGKQPWTGWQMQTD
KSGNSTAHIPSLLKLNVSNPNEPHQQLQLQLQAHQQQQQQHAPQPTHPHH
PPAHQPHAHPHHLTPHTHLPPQHTQQTHAESGSSGASSEIDANKRKMLPA
WIREGLEKMEREKQRQLERQQSSMTTPDVEVNHVKQVSSKTLTTPGNLLN
IANVASDSEDSIDVPVEARGELKVQQIGNELISKDDDRSSSSSEEPESEL
HGAIETGNRTVAEHVRMATVNDVNGKNYEERLADLMLVVRRTLTEILLET
TNEEIAAIAGETLKAHRAKASSAQVIRKSALSSITGNLGLAAYGDSSSET
EDDEDDEDERQAGAGKDAEKSAQLSAEELKARIRRSKRSFEKVIDDIEDR
VAKQELLDEQTLLRHRKRELERSVTGGGEHRRPAANPEPPSESASQATQE
KHQQSNGKRLSRKERTTRFSDNKDGKQQSQSFVQQVVATAVVPPPGSLSN
SSPQKLKPVPNPATNLLQMPESVATMLTAADKALHKANKSSHKKSKRRHS
SPSSSSSSSGSSSSSDSDDSSSTSSGSKTSGSRSKRSSRHGHRSHHSSSR
SKYERRDRDRERERARERERDRDRSHRQHRSSQLSGSHHQKQRRHRESSH
SGEDAGGSSSYHRSSRQSSSRSHDHGSNRSHDHGSSSSGRKRHRTRSRSK
SRSTHHSSSKAYSSTSASHPRKRHASFLDH

BO11228.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31211-PA 874 CG31211-PA 1..874 1..874 4548 100 Plus
CG31211-PB 893 CG31211-PB 1..893 1..874 4518 97.9 Plus
CG31211-PC 514 CG31211-PC 1..488 1..488 2591 100 Plus
CG5514-PC 1109 CG5514-PC 571..743 712..873 227 35.6 Plus
CG5514-PA 1109 CG5514-PA 571..743 712..873 227 35.6 Plus
CG5514-PC 1109 CG5514-PC 622..809 681..859 198 31.9 Plus
CG5514-PC 1109 CG5514-PC 495..769 587..860 184 25.3 Plus
CG5514-PC 1109 CG5514-PC 515..762 629..869 164 22.8 Plus