Clone Sequence Records
BO11229.3prime Sequence
780 bp (675 high quality bases) assembled on 2006-04-19
> BO11229.3prime
ATGGTCTAGAAAGCTTGCTTTGCGACGGCGACTCTTGCCCCGCCCACTGC
CCTCCTCCTCCGCGGCGTGCTCCTCGCTGTCCTCCGGCAAAGCGGATTTC
TCGATCATCGGTGTCTCGTTGCCCGACTTGATGGCGGCTATTAGGAAACG
AAGTTGCATCAGCTGCACGGCCGTCACGCGGGGATTGCTGCAATTCTCCA
GCCACTGCAGGAACTTTTCGCCATGGCGGATGGCCTCGATATCCTCGTCC
GCCGTGCAGTCCAGATACTTGGCCTTCTCCTCCTCGTCCGTTTTGTTTGA
GTTATTATTGTTATTGTTATTGCTGGCGCTCACATCGTTGTTGTTCGTAT
GCGGATTGCTGGTGTCCTGGAAGCTGCCCTCCGATTCGGAGGATCCCTGT
TCCGGCATCAACGGACCAGTGGCCTCCATTCCGCCCATCTTGAAGAGCAT
ATTGTCTAGGATCTTCTTGCATTCGCTTGTGGAATTCGTGGTCTCTGGGG
TTTTGGTCTTCGCCTTTGGTTCGGGACTCCTGCTGCCTGATGAATGGGCA
ATGGGACTTTGCGAAGGGGTCATCACTTTGCCGGCGGCTGAGAGATCCTC
CGGTTTCCCGGATGCCTCCGGCTCCACTTCGCCATCGAGATCGGTTTCGG
TGGCCTCGTCAGCCTCGGGATTCTGTTCGTTGGAGGACAAACTTCTCACC
GACGGCGTCTCAGTCTCTTTCGTGAGAGGGGAGTACAGTATGTTCGAGGG
ATCTCCCATGGATCCCCCCTCTGCGGGCGT
BO11229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11849-PA | 2037 | dan-RA | 1277..2034 | 776..19 | 3765 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-RC | 3968 | CG11849-RC | 2373..3134 | 780..19 | 3780 | 99.7 | Minus |
| dan-RB | 3340 | CG11849-RB | 1745..2506 | 780..19 | 3780 | 99.7 | Minus |
| dan-RA | 3340 | CG11849-RA | 1745..2506 | 780..19 | 3780 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25191211..25191972 | 780..19 | 3780 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-12 11:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2845..2927 | 350..269 | 143 | 67.1 | Minus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2739..2821 | 350..269 | 143 | 67.1 | Minus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2669 | 345..284 | 112 | 64.5 | Minus |
BO11229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:32 Download gff for
BO11229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-PA | 1273..2037 | 18..780 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:27 Download gff for
BO11229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11849-PA | 1273..2037 | 18..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:09:25 Download gff for
BO11229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 1745..2506 | 19..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:38 Download gff for
BO11229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 1745..2506 | 19..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:38 Download gff for
BO11229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25191211..25191972 | 19..780 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:09:25 Download gff for
BO11229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21016933..21017694 | 19..780 | 99 | | Minus |
BO11229.5prime Sequence
720 bp (715 high quality bases) assembled on 2006-04-19
> BO11229.5prime
GAAGTTATCAGTCGACATGAACATCCGCATGGGCACAAAGGGCAAGCGTC
CCCTGCGGAGCCTGACGCCCCGCGACAAGATCCATGCCATCCAGAGGATC
CACGATGGCGAGTCCAAGGCCTCGGTGGCCAGGGACATCGGCGTGCCCGA
GTCCACGCTGCGCGGCTGGTGCAAGAACGAGGACAAGCTCCGCTTCATGT
CCCGCCAGTCTGCCACGGATAACCTCTGCGCCGACGCCCTGGGCGATAAG
ATGGATGGAGGAGGAGGAGGAGGTGGTGGAGCAGGCGGCGGAGGTCTTCT
GGGACCGCCGGAGAAACGCCAGCGTTTGGACGGCGCCCTGCCCCTGAACT
TCTCCAACAAACTGAAGTTCGATGAGCTGGCCTTCAAGCGATCCCCTCTG
AATGGCCTGGACTACAGTACAAACAAGAATCTGGCCGATCTTGGGTACAA
TGGGCTGCCCGTAGACTATGCGGCCTTTAATGGCGGGGTCAAGGCCAAAG
TGTTTGGTGCCGATATCAACAGACCCGCCGCCGATCCCTCCCTAAATGCA
ATTAGTCCGCTCTCTAGCTTGACGCACCTTTCGGGTCTCACGGGCATATC
ACAATCCCCGCTGGCGATCAGTTTCAACGAGCTGACCACAAACCTCAACT
TGCTGGCCCAGCTGAATCCCGGTCTGGCGGCCATGTCGGGTCTAAACAGT
TTCCCAGCGGGCGCTGGTAA
BO11229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11849-PA | 2037 | dan-RA | 1..704 | 17..720 | 3520 | 100 | Plus |
| CG13651-PA | 1260 | danr-RA | 140..216 | 132..208 | 210 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-RC | 3968 | CG11849-RC | 1099..1804 | 15..720 | 3530 | 100 | Plus |
| dan-RB | 3340 | CG11849-RB | 471..1176 | 15..720 | 3530 | 100 | Plus |
| dan-RA | 3340 | CG11849-RA | 471..1176 | 15..720 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25189937..25190642 | 15..720 | 3530 | 100 | Plus |
| 3R | 32079331 | 3R | 25138255..25138448 | 15..208 | 445 | 82 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:56:42 has no hits.
BO11229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:33 Download gff for
BO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:28 Download gff for
BO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11849-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:16 Download gff for
BO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 471..1176 | 15..720 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:01:53 Download gff for
BO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 471..1176 | 15..720 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:01:53 Download gff for
BO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25189937..25190642 | 15..720 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:16 Download gff for
BO11229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21015659..21016364 | 15..720 | 100 | | Plus |
BO11229.complete Sequence
2068 bp assembled on 2008-01-16
GenBank Submission: FJ632034
> BO11229.complete
GAAGTTATCAGTCGACATGAACATCCGCATGGGCACAAAGGGCAAGCGTC
CCCTGCGGAGCCTGACGCCCCGCGACAAGATCCATGCCATCCAGAGGATC
CACGATGGCGAGTCCAAGGCCTCGGTGGCCAGGGACATCGGCGTGCCCGA
GTCCACGCTGCGCGGCTGGTGCAAGAACGAGGACAAGCTCCGCTTCATGT
CCCGCCAGTCTGCCACGGATAACCTCTGCGCCGACGCCCTGGGCGATAAG
ATGGATGGAGGAGGAGGAGGAGGTGGTGGAGCAGGCGGCGGAGGTCTTCT
GGGACCGCCGGAGAAACGCCAGCGTTTGGACGGCGCCCTGCCCCTGAACT
TCTCCAACAAACTGAAGTTCGATGAGCTGGCCTTCAAGCGATCCCCTCTG
AATGGCCTGGACTACAGTACAAACAAGAATCTGGCCGATCTTGGGTACAA
TGGGCTGCCCGTAGACTATGCGGCCTTTAATGGCGGGGTCAAGGCCAAAG
TGTTTGGTGCCGATATCAACAGACCCGCCGCCGATCCCTCCCTAAATGCA
ATTAGTCCGCTCTCTAGCTTGACGCACCTTTCGGGTCTCACGGGCATATC
ACAATCCCCGCTGGCGATCAGTTTCAACGAGCTGACCACAAACCTCAACT
TGCTGGCCCAGCTGAATCCCGGTCTGGCGGCCATGTCGGGTCTAAACAGT
TTCCCAGCGGGCGCTGGTAACCTGAGGACCCCGAAGCCCAGTGGCCAAAC
GCCGCTGCAGGTGCAGAGCCCCAGGAGCGATAGTGGAGATCGATCGGCGC
AGGGATTGTCGGTAAAGAACTGGGCCAAACAGAAGCCGGGGGAGGGCCAG
GGCAGCCTCAATCTGAGCATCAAGAACGAGGGCAAGGGAGGCGATATCAA
GAGTCCCAGTCCTTCGATTGCTCCTTCGCAAATGGGCGGGCCCATGACGC
TCTCCAATCTGGCCGAAGATCCCTTGCTCTACTGGCTCAAGTCGCAGCAG
ACCATGTTGGGTCTGAATCCCCTTTATCCGCCCACAATTCCCATGGGCGT
GACCAGTCCCCCTATCAGATCTTCCACGCCGCAGCACATGAGTCAGTTGG
CACAGACTCCGCCGATACCCTCGGCTCCGCTAACACCCTCGTCCACACCG
TCGGGCAGTCTGGACGAGAAGAACGCGGCGTGGTACAACTGGTGCAAGGC
GTTCGGTGCCAGTCTGCATACCCTGAATCCCAATGCCGCCACCTTGGCCG
CCCTGCAAGCCAACCAACTGCAGCAGCAGGTGGCCACCACGGCCGCAGAG
GGGGGATCCATGGGAGATCCCTCGAACATACTGTACTCCCATCTCACGAA
AGAGACTGAGACGCCGTCGGTGAGAAGTTTGTCCTCCAACGAACAGAATC
CCGAGGCTGACGAGGCCACCGAAACCGATCTCGATGGCGAAGTGGAGCCG
GAGGCATCCGGGAAACCGGAGGATCTCTCAGCCGCCGGCAAAGTGATGAC
CCCTTCGCAAAGTCCCATTGCCCATTCATCAGGCAGCAGGAGTCCCGAAC
CAAAGGCGAAGACCAAAACCCCAGAGACCACGAATTCCACAAGCGAATGC
AAGAAGATCCTAGACAATATGCTCTTCAAGATGGGCGGAATGGAGGCCAC
TGGTCCGTTGATGCCGGAACAGGGATCCTCCGAATCGGAGGGCAGCTTCC
AGGACACCAGCAATCCGCATACGAACAACAACGATGTGAGCGCCAGCAAT
AACAATAACAATAATAACTCAAACAAAACGGACGAGGAGGAGAAGGCCAA
GTATCTGGACTGCACGGCGGACGAGGATATCGAGGCCATCCGCCATGGCG
AAAAGTTCCTGCAGTGGCTGGAGAATTGCAGCAATCCCCGCGTGACGGCC
GTGCAGCTGATGCAACTTCGTTTCCTAATAGCCGCCATCAAGTCGGGCAA
CGAGACACCGATGATCGAGAAATCCGCTTTGCCGGAGGACAGCGAGGAGC
ACGCCGCGGAGGAGGAGGGCAGTGGGCGGGGCAAGAGTCGCCGTCGCAAA
GCAAGCTTTCTAGACCAT
BO11229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-RC | 2037 | CG11849-PC | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| dan-RB | 2346 | CG11849-PB | 1..2034 | 17..2050 | 10170 | 100 | Plus |
| dan-RA | 2037 | CG11849-PA | 1..2034 | 17..2050 | 10170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-RC | 3968 | CG11849-RC | 1099..3134 | 15..2050 | 10180 | 100 | Plus |
| dan-RB | 3340 | CG11849-RB | 471..2506 | 15..2050 | 10180 | 100 | Plus |
| dan-RA | 3340 | CG11849-RA | 471..2506 | 15..2050 | 10180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25189937..25191972 | 15..2050 | 10180 | 100 | Plus |
| 3R | 32079331 | 3R | 25138255..25138448 | 15..208 | 445 | 82 | Plus |
Blast to na_te.dros performed 2014-11-27 06:49:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2845..2927 | 1719..1800 | 143 | 67.1 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2739..2821 | 1719..1800 | 143 | 67.1 | Plus |
BO11229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:49 Download gff for
BO11229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 1..2037 | 17..2051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:07 Download gff for
BO11229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 471..2504 | 17..2052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:25 Download gff for
BO11229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 473..2506 | 17..2052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:49 Download gff for
BO11229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 469..2504 | 15..2050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:17 Download gff for
BO11229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 473..2506 | 17..2052 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:17 Download gff for
BO11229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25189939..25191972 | 17..2052 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:25 Download gff for
BO11229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21015661..21017694 | 17..2052 | 99 | | Plus |
BO11229.pep Sequence
Translation from 16 to 2068
> BO11229.pep
MNIRMGTKGKRPLRSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRG
WCKNEDKLRFMSRQSATDNLCADALGDKMDGGGGGGGGAGGGGLLGPPEK
RQRLDGALPLNFSNKLKFDELAFKRSPLNGLDYSTNKNLADLGYNGLPVD
YAAFNGGVKAKVFGADINRPAADPSLNAISPLSSLTHLSGLTGISQSPLA
ISFNELTTNLNLLAQLNPGLAAMSGLNSFPAGAGNLRTPKPSGQTPLQVQ
SPRSDSGDRSAQGLSVKNWAKQKPGEGQGSLNLSIKNEGKGGDIKSPSPS
IAPSQMGGPMTLSNLAEDPLLYWLKSQQTMLGLNPLYPPTIPMGVTSPPI
RSSTPQHMSQLAQTPPIPSAPLTPSSTPSGSLDEKNAAWYNWCKAFGASL
HTLNPNAATLAALQANQLQQQVATTAAEGGSMGDPSNILYSHLTKETETP
SVRSLSSNEQNPEADEATETDLDGEVEPEASGKPEDLSAAGKVMTPSQSP
IAHSSGSRSPEPKAKTKTPETTNSTSECKKILDNMLFKMGGMEATGPLMP
EQGSSESEGSFQDTSNPHTNNNDVSASNNNNNNNSNKTDEEEKAKYLDCT
ADEDIEAIRHGEKFLQWLENCSNPRVTAVQLMQLRFLIAAIKSGNETPMI
EKSALPEDSEEHAAEEEGSGRGKSRRRKASFLDH
BO11229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-PC | 678 | CG11849-PC | 1..678 | 1..678 | 3524 | 100 | Plus |
| dan-PB | 781 | CG11849-PB | 1..678 | 1..678 | 3524 | 100 | Plus |
| dan-PA | 678 | CG11849-PA | 1..678 | 1..678 | 3524 | 100 | Plus |
| danr-PA | 419 | CG13651-PA | 9..408 | 1..500 | 406 | 31.1 | Plus |
