Clone BO11233 Report

Search the DGRC for BO11233

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptmi-RA
Protein status:BO11233.pep:
Sequenced Size:2857

Clone Sequence Records

BO11233.3prime Sequence

810 bp (728 high quality bases) assembled on 2006-04-19

> BO11233.3prime
ATGGTCTAGAAAGCTTGCGCAGTCAAAGGAAATCTGTCTCTTGGCCTTGC
CTCCGGAGTGGTTGCTGTTGCCCACGGGTGGCATTTGGAACTTGCGCGCA
GAGCTGTTACTTCCGCCGCCTCCGAAGTAGGGACTGATGTTCTGCTGGTC
CTTGCCGGTAAAGTTCTTTTGCGCCGAACGGCGAGCCTCGCAGTCCATGT
TCTCGCGCAGCGCGAGTCCGCCTAGGTTACTCTTCGACGAGCTGTTCTGG
AGCGAGGCATTGGGCCGGATGGGTTGGCGTTCCTTGCAGAAGAGATCCTC
CGAGATGCGATCCACTATACTCGATTGCGTTTCGGAGCAGGCATTTGTGG
GCAGGCTCATTTGACTCAGACCGAAGGAATCGATGGAGTTCTCGCTGCCG
AAGATGTTGTGCAGGGATCGCGCCGAACCTGCTGCTGATCCTACGACCGA
TGTTTGCGAGAGAAGCAGTTTACGCTGGGCAAACTCCTCCGGACCGATGT
AGCCCGAGAGGCGGGTGCTCGACAACCGCTTGGCCTCGCATTCCTGACTG
CGCGCCTGCAGGTAAACGTCGTCCGCATTCTTCCCCGCAATCACGCTAAA
GGCAAACTTCTTGGCCAGCCTTAGCAGTGTTTCGCTGTTGCTGGACGAAT
GTCCCAGGTAGAATTCCTGGAAGATGCGCTTCACAATGCGCGTAAGGTCT
GCCGCATGCTGACGGAATTGCTCGTGCTTCCGCGTAATTTTCTTCTCCTG
CAGTGCCTGCGACACAGCCCAAAGGAGTTTCTTTCGCTGGTTATCAGTCA
TACTGCTATT

BO11233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5360-PA 2826 CG5360-RA 2032..2823 810..19 3935 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
mi-RA 3845 CG5360-RA 2429..3220 810..19 3945 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23527033..23527635 621..19 3015 100 Minus
2R 25286936 2R 23526812..23526975 782..619 805 99.4 Minus
Blast to na_te.dros performed 2015-02-09 03:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 833..881 768..720 119 71.4 Minus

BO11233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:37 Download gff for BO11233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5360-PA 2032..2826 18..810 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:32 Download gff for BO11233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5360-PA 2032..2826 18..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:51:43 Download gff for BO11233.3prime
Subject Subject Range Query Range Percent Splice Strand
mi-RA 2429..3220 19..810 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:24:27 Download gff for BO11233.3prime
Subject Subject Range Query Range Percent Splice Strand
mi-RA 2429..3220 19..810 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:24:27 Download gff for BO11233.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23526680..23526709 781..810 100 -> Minus
2R 23526814..23526974 620..780 99 -> Minus
2R 23527035..23527635 19..619 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:51:43 Download gff for BO11233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19414203..19414232 781..810 100 -> Minus
arm_2R 19414337..19414497 620..780 99 -> Minus
arm_2R 19414558..19415158 19..619 100   Minus

BO11233.5prime Sequence

849 bp (776 high quality bases) assembled on 2006-04-19

> BO11233.5prime
GAAGTTATCAGTCGACATGGCCACTATTGGAAACAAGATAAACAACAGCT
ACGAATCGGAGCCTTCTACAGGAAGCGGGTCTTCGCTCAGTGAAAACAAT
GAGAGCCACATATCTGACGAGGATCACATGAACTTACCGTATCTGATGAA
ACCGAAAGCACTGAGCAGCCAGCCCATCAAGGAAACCCCAACGCCACCCA
ATCCGAAGACGGGCAGCCAGGAATCGCAGTTCCTGGGCTTCGGAGACAGC
CCATATGGCCAGGTGAACAAGCGTCTGTATGGCTCCCAGCTGCAGAACCT
TAAGCTGCCGGAGGTGGAGCCCCCTGCCGTCCGACGTCCCTCGCCGGGCA
AGATTGTCTTTCCCCGGTTCTACGACACCCTCATCGAGGAGAACAGCTGC
AATGCCGTGGACATGGCCGTGTCAGTGGCCACGACAGCCACCACGACAAC
GGGCAGCCTCTCCTTCGATGGCAAAATCAAGAGCCTGACCGCAAAGCCCG
AAATTCAGGACAAGCCTGGGCCCTCCAATGCTACGAATCCACGTCTGTCA
AACGTGCTAGAAACCTCGCTCAACACCTCGCAGCAGAAGTTCAACAACGA
ACGCTCACCTGATCTCTTTGCCGACAGCGACGATGAAGCTGACAACGACG
AGCAACCGGAAAAAGAGCCGCCCACCAGGCTGGAGGATCTGCCCGAAGTG
TTGGAAGAGTCGCAGTGCACCAGCGACGCACGAGCTCGCTCCTCGCTGAA
TGCTCCCACGGAGTCCAGTTTTGTGGATGAGCAGACGATGGACCTTTCGA
GCACCCAGCTGAACGCCAACGACCCCCGGTCGCACTTCTTGGAGAACTG

BO11233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5360-PA 2826 CG5360-RA 1..833 17..849 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
mi-RA 3845 CG5360-RA 398..1230 17..849 4165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23524469..23525239 79..849 3855 100 Plus
2R 25286936 2R 23524350..23524412 17..79 315 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:56:53 has no hits.

BO11233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:38 Download gff for BO11233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5360-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:34 Download gff for BO11233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5360-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:03:48 Download gff for BO11233.5prime
Subject Subject Range Query Range Percent Splice Strand
mi-RA 391..1230 8..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:40 Download gff for BO11233.5prime
Subject Subject Range Query Range Percent Splice Strand
mi-RA 391..1230 8..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:40 Download gff for BO11233.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23524343..23524412 8..79 94 -> Plus
2R 23524470..23525239 80..849 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:03:48 Download gff for BO11233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19411866..19411935 8..79 94 -> Plus
arm_2R 19411993..19412762 80..849 100   Plus

BO11233.complete Sequence

2857 bp assembled on 2008-01-16

GenBank Submission: FJ632035

> BO11233.complete
GAAGTTATCAGTCGACATGGCCACTATTGGAAACAAGATAAACAACAGCT
ACGAATCGGAGCCTTCTACAGGAAGCGGGTCTTCGCTCAGTGAAAACAAT
GAGAGCCACATATCTGACGAGGATCACATGAACTTACCGTATCTGATGAA
ACCGAAAGCACTGAGCAGCCAGCCCATCAAGGAAACCCCAACGCCACCCA
ATCCGAAGACGGGCAGCCAGGAATCGCAGTTCCTGGGCTTCGGAGACAGC
CCATATGGCCAGGTGAACAAGCGTCTGTATGGCTCCCAGCTGCAGAACCT
TAAGCTGCCGGAGGTGGAGCCCCCTGCCGTCCGACGTCCCTCGCCGGGCA
AGATTGTCTTTCCCCGGTTCTACGACACCCTCATCGAGGAGAACAGCTGC
AATGCCGTGGACATGGCCGTGTCAGTGGCCACGACAGCCACCACGACAAC
GGGCAGCCTCTCCTTCGATGGCAAAATCAAGAGCCTGACCGCAAAGCCCG
AAATTCAGGACAAGCCTGGGCCCTCCAATGCTACGAATCCACGTCTGTCA
AACGTGCTAGAAACCTCGCTCAACACCTCGCAGCAGAAGTTCAACAACGA
ACGCTCACCTGATCTCTTTGCCGACAGCGACGATGAAGCTGACAACGACG
AGCAACCGGAAAAAGAGCCGCCCACCAGGCTGGAGGATCTGCCCGAAGTG
TTGGAAGAGTCGCAGTGCACCAGCGACGCACGAGCTCGCTCCTCGCTGAA
TGCTCCCACGGAGTCCAGTTTTGTGGATGAGCAGACGATGGACCTTTCGA
GCACCCAGCTGAACGCCAACGACCCCCGGTCGCACTTCTTGGAGAACTGC
AGGAGAGAACGGGAGCTGTATCGGCGGATTCGTCGCTGCCTACAGGGAGT
TCGTCCGCCGCCCTCGGTGACTGCACCCGATGTGGACGTCATCAAAATGG
TGCTTAGCATGAAATCAAACGTGCTAAACTTTCTCTCCAAGGATAGCCCA
CCATCTACACCCAGAATCGAGGACAGTGGCATTAGCGAAACAACCTCACT
GTTTCGACCATCTCACAGTCTCTCGGAGGCTCAAAACATGGGCTGGCGGG
ATGTGCTGGGAGTAAGACATCATGGACTGAGCTACAATCTTAACAAGGCT
GCCGAACAAAATGAATACCTCAGCATGTCCGTGGTGGACCGCTATGTGGG
CGTGGAAACCGCGACGTCCTATGTGAGATCGCCATCGAGCGCCAAGAAGA
GAAACATGCGTATGAAAATGTTAACCCAATCGCCTGGCAATCGCCTCAGT
CATTTGGCCAAACGACGTGCCATATTTTCATCTGCGAATCTAGCCACCAA
CTCACAGAAGCTTAACAGCTCAATTGGACCACAAATAATGCTAGATAAGA
AAAAAGTGCGAAATAAACGCAAGGCCACGCCCAAGCGAAAGACGCCGGGC
AGCAAGAAAAAAGCTCGCAAGACGCCATCTTCATCCGCCCGAAAGCGCCT
CTACCGCACTGATCTCATCAAGCCAGGACCTTCGAGAGAAACCTCTAAGC
GTGCCTTATTCCAAAGTCCGGCCAAAACCCTGCAGCAACAGCAGCTAATG
CCGCCCAAACCGCTCTTCAAGCCGGAGATTGCGAACCGCGTAGAGCGGTC
GAAGCGCGCTCTCTTTTCGCCGGATCACCAGGGCAGCAGTAACCAGCTGG
AGTCGATCCTGAAGCGGAAAAGAAACGCCTGCGATGACGACGAGGATTCA
GCTGATTTGGCTAGCCAGAGCAGCAAGCTCTTCCGGGCCGAGAGCAGTGG
ACCCAGTGGGTTGACTCCTCGCGCTCTAAAGATCAAGAGCCAGAGTTTCT
GCATTGGAGCTGGTTCCTCCACTGCGGGTGTTCAGCTAAAGTTGGCGCAG
CACGCGGCTGCTACCCCTGGGCAGACGCGGCTCAGTCTTGGCCTGAGCGG
CAGCAGTAGCAACCTGGTTAACCCGGCATCTTTTGCAAGCGGTACGCCAC
TGGCGAGTAAACTGCACAGAGCGCACTCGGAGATGAGCGCCACACCGAAT
AGCAGTATGACTGATAACCAGCGAAAGAAACTCCTTTGGGCTGTGTCGCA
GGCACTGCAGGAGAAGAAAATTACGCCGAAGCACGAGCAATTCCGTCAGC
ATGCGGCAGACCTTACGCGCATTGTGAAGCGCATCTTCCAGGAATTCTAC
CTGGGACATTCGTCCAGCAACAGCGAAACACTGCTAAGGCTGGCCAAGAA
GTTTGCCTTTAGCGTGATTGCGGGGAAGAATGCGGACGACGTTTACCTGC
AGGCGCGCAGTCAGGAATGCGAGGCCAAGCGGTTGTCGAGCACCCGCCTC
TCGGGCTACATCGGTCCGGAGGAGTTTGCCCAGCGTAAACTGCTTCTCTC
GCAAACATCGGTCGTAGGATCAGCAGCAGGTTCGGCGCGATCCCTGCACA
ACATCTTCGGCAGCGAGAACTCCATCGATTCCTTCGGTCTGAGTCAAATG
AGCCTGCCCACAAATGCCTGCTCCGAAACGCAATCGAGTATAGTGGATCG
CATCTCGGAGGATCTCTTCTGCAAGGAACGCCAACCCATCCGGCCCAATG
CCTCGCTCCAGAACAGCTCGTCGAAGAGTAACCTAGGCGGACTCGCGCTG
CGCGAGAACATGGACTGCGAGGCTCGCCGTTCGGCGCAAAAGAACTTTAC
CGGCAAGGACCAGCAGAACATCAGTCCCTACTTCGGAGGCGGCGGAAGTA
ACAGCTCTGCGCGCAAGTTCCAAATGCCACCCGTGGGCAACAGCAACCAC
TCCGGAGGCAAGGCCAAGAGACAGATTTCCTTTGACTGCGCAAGCTTTCT
AGACCAT

BO11233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
mi-RA 2826 CG5360-PA 1..2823 17..2839 14115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
mi-RA 3845 CG5360-RA 398..3220 17..2839 14115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23524469..23525521 79..1131 5265 100 Plus
2R 25286936 2R 23526094..23526709 1462..2077 3080 100 Plus
2R 25286936 2R 23527033..23527635 2237..2839 3015 100 Plus
2R 25286936 2R 23526812..23526975 2076..2239 820 100 Plus
2R 25286936 2R 23525582..23525718 1130..1266 685 100 Plus
2R 25286936 2R 23525779..23525913 1267..1401 675 100 Plus
2R 25286936 2R 23524350..23524412 17..79 315 100 Plus
2R 25286936 2R 23525977..23526038 1402..1463 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:48:46 has no hits.

BO11233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:50 Download gff for BO11233.complete
Subject Subject Range Query Range Percent Splice Strand
CG5360-RA 1..2826 17..2840 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:54 Download gff for BO11233.complete
Subject Subject Range Query Range Percent Splice Strand
CG5360-RA 396..3218 17..2841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:32 Download gff for BO11233.complete
Subject Subject Range Query Range Percent Splice Strand
mi-RA 398..3220 17..2841 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:50 Download gff for BO11233.complete
Subject Subject Range Query Range Percent Splice Strand
CG5360-RA 389..3218 8..2839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:19 Download gff for BO11233.complete
Subject Subject Range Query Range Percent Splice Strand
mi-RA 398..3220 17..2841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:19 Download gff for BO11233.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23524350..23524412 17..79 100 -> Plus
2R 23524470..23525521 80..1131 100 -> Plus
2R 23525584..23525718 1132..1266 100 -> Plus
2R 23525779..23525913 1267..1401 100 -> Plus
2R 23525977..23526038 1402..1463 100 -> Plus
2R 23526096..23526709 1464..2077 100 -> Plus
2R 23526814..23526974 2078..2238 100 -> Plus
2R 23527035..23527635 2239..2841 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:32 Download gff for BO11233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19411873..19411935 17..79 100 -> Plus
arm_2R 19411993..19413044 80..1131 100 -> Plus
arm_2R 19413107..19413241 1132..1266 100 -> Plus
arm_2R 19413302..19413436 1267..1401 100 -> Plus
arm_2R 19413500..19413561 1402..1463 100 -> Plus
arm_2R 19413619..19414232 1464..2077 100 -> Plus
arm_2R 19414337..19414497 2078..2238 100 -> Plus
arm_2R 19414558..19415158 2239..2841 99   Plus

BO11233.pep Sequence

Translation from 16 to 2857

> BO11233.pep
MATIGNKINNSYESEPSTGSGSSLSENNESHISDEDHMNLPYLMKPKALS
SQPIKETPTPPNPKTGSQESQFLGFGDSPYGQVNKRLYGSQLQNLKLPEV
EPPAVRRPSPGKIVFPRFYDTLIEENSCNAVDMAVSVATTATTTTGSLSF
DGKIKSLTAKPEIQDKPGPSNATNPRLSNVLETSLNTSQQKFNNERSPDL
FADSDDEADNDEQPEKEPPTRLEDLPEVLEESQCTSDARARSSLNAPTES
SFVDEQTMDLSSTQLNANDPRSHFLENCRRERELYRRIRRCLQGVRPPPS
VTAPDVDVIKMVLSMKSNVLNFLSKDSPPSTPRIEDSGISETTSLFRPSH
SLSEAQNMGWRDVLGVRHHGLSYNLNKAAEQNEYLSMSVVDRYVGVETAT
SYVRSPSSAKKRNMRMKMLTQSPGNRLSHLAKRRAIFSSANLATNSQKLN
SSIGPQIMLDKKKVRNKRKATPKRKTPGSKKKARKTPSSSARKRLYRTDL
IKPGPSRETSKRALFQSPAKTLQQQQLMPPKPLFKPEIANRVERSKRALF
SPDHQGSSNQLESILKRKRNACDDDEDSADLASQSSKLFRAESSGPSGLT
PRALKIKSQSFCIGAGSSTAGVQLKLAQHAAATPGQTRLSLGLSGSSSNL
VNPASFASGTPLASKLHRAHSEMSATPNSSMTDNQRKKLLWAVSQALQEK
KITPKHEQFRQHAADLTRIVKRIFQEFYLGHSSSNSETLLRLAKKFAFSV
IAGKNADDVYLQARSQECEAKRLSSTRLSGYIGPEEFAQRKLLLSQTSVV
GSAAGSARSLHNIFGSENSIDSFGLSQMSLPTNACSETQSSIVDRISEDL
FCKERQPIRPNASLQNSSSKSNLGGLALRENMDCEARRSAQKNFTGKDQQ
NISPYFGGGGSNSSARKFQMPPVGNSNHSGGKAKRQISFDCASFLDH

BO11233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
mi-PA 941 CG5360-PA 1..941 1..941 4788 100 Plus