Clone Sequence Records
BO11233.3prime Sequence
810 bp (728 high quality bases) assembled on 2006-04-19
> BO11233.3prime
ATGGTCTAGAAAGCTTGCGCAGTCAAAGGAAATCTGTCTCTTGGCCTTGC
CTCCGGAGTGGTTGCTGTTGCCCACGGGTGGCATTTGGAACTTGCGCGCA
GAGCTGTTACTTCCGCCGCCTCCGAAGTAGGGACTGATGTTCTGCTGGTC
CTTGCCGGTAAAGTTCTTTTGCGCCGAACGGCGAGCCTCGCAGTCCATGT
TCTCGCGCAGCGCGAGTCCGCCTAGGTTACTCTTCGACGAGCTGTTCTGG
AGCGAGGCATTGGGCCGGATGGGTTGGCGTTCCTTGCAGAAGAGATCCTC
CGAGATGCGATCCACTATACTCGATTGCGTTTCGGAGCAGGCATTTGTGG
GCAGGCTCATTTGACTCAGACCGAAGGAATCGATGGAGTTCTCGCTGCCG
AAGATGTTGTGCAGGGATCGCGCCGAACCTGCTGCTGATCCTACGACCGA
TGTTTGCGAGAGAAGCAGTTTACGCTGGGCAAACTCCTCCGGACCGATGT
AGCCCGAGAGGCGGGTGCTCGACAACCGCTTGGCCTCGCATTCCTGACTG
CGCGCCTGCAGGTAAACGTCGTCCGCATTCTTCCCCGCAATCACGCTAAA
GGCAAACTTCTTGGCCAGCCTTAGCAGTGTTTCGCTGTTGCTGGACGAAT
GTCCCAGGTAGAATTCCTGGAAGATGCGCTTCACAATGCGCGTAAGGTCT
GCCGCATGCTGACGGAATTGCTCGTGCTTCCGCGTAATTTTCTTCTCCTG
CAGTGCCTGCGACACAGCCCAAAGGAGTTTCTTTCGCTGGTTATCAGTCA
TACTGCTATT
BO11233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5360-PA | 2826 | CG5360-RA | 2032..2823 | 810..19 | 3935 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mi-RA | 3845 | CG5360-RA | 2429..3220 | 810..19 | 3945 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23527033..23527635 | 621..19 | 3015 | 100 | Minus |
2R | 25286936 | 2R | 23526812..23526975 | 782..619 | 805 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-09 03:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 833..881 | 768..720 | 119 | 71.4 | Minus |
BO11233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:37 Download gff for
BO11233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5360-PA | 2032..2826 | 18..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:32 Download gff for
BO11233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5360-PA | 2032..2826 | 18..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:51:43 Download gff for
BO11233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mi-RA | 2429..3220 | 19..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:24:27 Download gff for
BO11233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mi-RA | 2429..3220 | 19..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:24:27 Download gff for
BO11233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23526680..23526709 | 781..810 | 100 | -> | Minus |
2R | 23526814..23526974 | 620..780 | 99 | -> | Minus |
2R | 23527035..23527635 | 19..619 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:51:43 Download gff for
BO11233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19414203..19414232 | 781..810 | 100 | -> | Minus |
arm_2R | 19414337..19414497 | 620..780 | 99 | -> | Minus |
arm_2R | 19414558..19415158 | 19..619 | 100 | | Minus |
BO11233.5prime Sequence
849 bp (776 high quality bases) assembled on 2006-04-19
> BO11233.5prime
GAAGTTATCAGTCGACATGGCCACTATTGGAAACAAGATAAACAACAGCT
ACGAATCGGAGCCTTCTACAGGAAGCGGGTCTTCGCTCAGTGAAAACAAT
GAGAGCCACATATCTGACGAGGATCACATGAACTTACCGTATCTGATGAA
ACCGAAAGCACTGAGCAGCCAGCCCATCAAGGAAACCCCAACGCCACCCA
ATCCGAAGACGGGCAGCCAGGAATCGCAGTTCCTGGGCTTCGGAGACAGC
CCATATGGCCAGGTGAACAAGCGTCTGTATGGCTCCCAGCTGCAGAACCT
TAAGCTGCCGGAGGTGGAGCCCCCTGCCGTCCGACGTCCCTCGCCGGGCA
AGATTGTCTTTCCCCGGTTCTACGACACCCTCATCGAGGAGAACAGCTGC
AATGCCGTGGACATGGCCGTGTCAGTGGCCACGACAGCCACCACGACAAC
GGGCAGCCTCTCCTTCGATGGCAAAATCAAGAGCCTGACCGCAAAGCCCG
AAATTCAGGACAAGCCTGGGCCCTCCAATGCTACGAATCCACGTCTGTCA
AACGTGCTAGAAACCTCGCTCAACACCTCGCAGCAGAAGTTCAACAACGA
ACGCTCACCTGATCTCTTTGCCGACAGCGACGATGAAGCTGACAACGACG
AGCAACCGGAAAAAGAGCCGCCCACCAGGCTGGAGGATCTGCCCGAAGTG
TTGGAAGAGTCGCAGTGCACCAGCGACGCACGAGCTCGCTCCTCGCTGAA
TGCTCCCACGGAGTCCAGTTTTGTGGATGAGCAGACGATGGACCTTTCGA
GCACCCAGCTGAACGCCAACGACCCCCGGTCGCACTTCTTGGAGAACTG
BO11233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5360-PA | 2826 | CG5360-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mi-RA | 3845 | CG5360-RA | 398..1230 | 17..849 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23524469..23525239 | 79..849 | 3855 | 100 | Plus |
2R | 25286936 | 2R | 23524350..23524412 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:56:53 has no hits.
BO11233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:38 Download gff for
BO11233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5360-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:34 Download gff for
BO11233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5360-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:03:48 Download gff for
BO11233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mi-RA | 391..1230 | 8..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:40 Download gff for
BO11233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mi-RA | 391..1230 | 8..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:40 Download gff for
BO11233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23524343..23524412 | 8..79 | 94 | -> | Plus |
2R | 23524470..23525239 | 80..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:03:48 Download gff for
BO11233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19411866..19411935 | 8..79 | 94 | -> | Plus |
arm_2R | 19411993..19412762 | 80..849 | 100 | | Plus |
BO11233.complete Sequence
2857 bp assembled on 2008-01-16
GenBank Submission: FJ632035
> BO11233.complete
GAAGTTATCAGTCGACATGGCCACTATTGGAAACAAGATAAACAACAGCT
ACGAATCGGAGCCTTCTACAGGAAGCGGGTCTTCGCTCAGTGAAAACAAT
GAGAGCCACATATCTGACGAGGATCACATGAACTTACCGTATCTGATGAA
ACCGAAAGCACTGAGCAGCCAGCCCATCAAGGAAACCCCAACGCCACCCA
ATCCGAAGACGGGCAGCCAGGAATCGCAGTTCCTGGGCTTCGGAGACAGC
CCATATGGCCAGGTGAACAAGCGTCTGTATGGCTCCCAGCTGCAGAACCT
TAAGCTGCCGGAGGTGGAGCCCCCTGCCGTCCGACGTCCCTCGCCGGGCA
AGATTGTCTTTCCCCGGTTCTACGACACCCTCATCGAGGAGAACAGCTGC
AATGCCGTGGACATGGCCGTGTCAGTGGCCACGACAGCCACCACGACAAC
GGGCAGCCTCTCCTTCGATGGCAAAATCAAGAGCCTGACCGCAAAGCCCG
AAATTCAGGACAAGCCTGGGCCCTCCAATGCTACGAATCCACGTCTGTCA
AACGTGCTAGAAACCTCGCTCAACACCTCGCAGCAGAAGTTCAACAACGA
ACGCTCACCTGATCTCTTTGCCGACAGCGACGATGAAGCTGACAACGACG
AGCAACCGGAAAAAGAGCCGCCCACCAGGCTGGAGGATCTGCCCGAAGTG
TTGGAAGAGTCGCAGTGCACCAGCGACGCACGAGCTCGCTCCTCGCTGAA
TGCTCCCACGGAGTCCAGTTTTGTGGATGAGCAGACGATGGACCTTTCGA
GCACCCAGCTGAACGCCAACGACCCCCGGTCGCACTTCTTGGAGAACTGC
AGGAGAGAACGGGAGCTGTATCGGCGGATTCGTCGCTGCCTACAGGGAGT
TCGTCCGCCGCCCTCGGTGACTGCACCCGATGTGGACGTCATCAAAATGG
TGCTTAGCATGAAATCAAACGTGCTAAACTTTCTCTCCAAGGATAGCCCA
CCATCTACACCCAGAATCGAGGACAGTGGCATTAGCGAAACAACCTCACT
GTTTCGACCATCTCACAGTCTCTCGGAGGCTCAAAACATGGGCTGGCGGG
ATGTGCTGGGAGTAAGACATCATGGACTGAGCTACAATCTTAACAAGGCT
GCCGAACAAAATGAATACCTCAGCATGTCCGTGGTGGACCGCTATGTGGG
CGTGGAAACCGCGACGTCCTATGTGAGATCGCCATCGAGCGCCAAGAAGA
GAAACATGCGTATGAAAATGTTAACCCAATCGCCTGGCAATCGCCTCAGT
CATTTGGCCAAACGACGTGCCATATTTTCATCTGCGAATCTAGCCACCAA
CTCACAGAAGCTTAACAGCTCAATTGGACCACAAATAATGCTAGATAAGA
AAAAAGTGCGAAATAAACGCAAGGCCACGCCCAAGCGAAAGACGCCGGGC
AGCAAGAAAAAAGCTCGCAAGACGCCATCTTCATCCGCCCGAAAGCGCCT
CTACCGCACTGATCTCATCAAGCCAGGACCTTCGAGAGAAACCTCTAAGC
GTGCCTTATTCCAAAGTCCGGCCAAAACCCTGCAGCAACAGCAGCTAATG
CCGCCCAAACCGCTCTTCAAGCCGGAGATTGCGAACCGCGTAGAGCGGTC
GAAGCGCGCTCTCTTTTCGCCGGATCACCAGGGCAGCAGTAACCAGCTGG
AGTCGATCCTGAAGCGGAAAAGAAACGCCTGCGATGACGACGAGGATTCA
GCTGATTTGGCTAGCCAGAGCAGCAAGCTCTTCCGGGCCGAGAGCAGTGG
ACCCAGTGGGTTGACTCCTCGCGCTCTAAAGATCAAGAGCCAGAGTTTCT
GCATTGGAGCTGGTTCCTCCACTGCGGGTGTTCAGCTAAAGTTGGCGCAG
CACGCGGCTGCTACCCCTGGGCAGACGCGGCTCAGTCTTGGCCTGAGCGG
CAGCAGTAGCAACCTGGTTAACCCGGCATCTTTTGCAAGCGGTACGCCAC
TGGCGAGTAAACTGCACAGAGCGCACTCGGAGATGAGCGCCACACCGAAT
AGCAGTATGACTGATAACCAGCGAAAGAAACTCCTTTGGGCTGTGTCGCA
GGCACTGCAGGAGAAGAAAATTACGCCGAAGCACGAGCAATTCCGTCAGC
ATGCGGCAGACCTTACGCGCATTGTGAAGCGCATCTTCCAGGAATTCTAC
CTGGGACATTCGTCCAGCAACAGCGAAACACTGCTAAGGCTGGCCAAGAA
GTTTGCCTTTAGCGTGATTGCGGGGAAGAATGCGGACGACGTTTACCTGC
AGGCGCGCAGTCAGGAATGCGAGGCCAAGCGGTTGTCGAGCACCCGCCTC
TCGGGCTACATCGGTCCGGAGGAGTTTGCCCAGCGTAAACTGCTTCTCTC
GCAAACATCGGTCGTAGGATCAGCAGCAGGTTCGGCGCGATCCCTGCACA
ACATCTTCGGCAGCGAGAACTCCATCGATTCCTTCGGTCTGAGTCAAATG
AGCCTGCCCACAAATGCCTGCTCCGAAACGCAATCGAGTATAGTGGATCG
CATCTCGGAGGATCTCTTCTGCAAGGAACGCCAACCCATCCGGCCCAATG
CCTCGCTCCAGAACAGCTCGTCGAAGAGTAACCTAGGCGGACTCGCGCTG
CGCGAGAACATGGACTGCGAGGCTCGCCGTTCGGCGCAAAAGAACTTTAC
CGGCAAGGACCAGCAGAACATCAGTCCCTACTTCGGAGGCGGCGGAAGTA
ACAGCTCTGCGCGCAAGTTCCAAATGCCACCCGTGGGCAACAGCAACCAC
TCCGGAGGCAAGGCCAAGAGACAGATTTCCTTTGACTGCGCAAGCTTTCT
AGACCAT
BO11233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mi-RA | 2826 | CG5360-PA | 1..2823 | 17..2839 | 14115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mi-RA | 3845 | CG5360-RA | 398..3220 | 17..2839 | 14115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23524469..23525521 | 79..1131 | 5265 | 100 | Plus |
2R | 25286936 | 2R | 23526094..23526709 | 1462..2077 | 3080 | 100 | Plus |
2R | 25286936 | 2R | 23527033..23527635 | 2237..2839 | 3015 | 100 | Plus |
2R | 25286936 | 2R | 23526812..23526975 | 2076..2239 | 820 | 100 | Plus |
2R | 25286936 | 2R | 23525582..23525718 | 1130..1266 | 685 | 100 | Plus |
2R | 25286936 | 2R | 23525779..23525913 | 1267..1401 | 675 | 100 | Plus |
2R | 25286936 | 2R | 23524350..23524412 | 17..79 | 315 | 100 | Plus |
2R | 25286936 | 2R | 23525977..23526038 | 1402..1463 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:48:46 has no hits.
BO11233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:50 Download gff for
BO11233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5360-RA | 1..2826 | 17..2840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:54 Download gff for
BO11233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5360-RA | 396..3218 | 17..2841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:32 Download gff for
BO11233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mi-RA | 398..3220 | 17..2841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:50 Download gff for
BO11233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5360-RA | 389..3218 | 8..2839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:19 Download gff for
BO11233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mi-RA | 398..3220 | 17..2841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:19 Download gff for
BO11233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23524350..23524412 | 17..79 | 100 | -> | Plus |
2R | 23524470..23525521 | 80..1131 | 100 | -> | Plus |
2R | 23525584..23525718 | 1132..1266 | 100 | -> | Plus |
2R | 23525779..23525913 | 1267..1401 | 100 | -> | Plus |
2R | 23525977..23526038 | 1402..1463 | 100 | -> | Plus |
2R | 23526096..23526709 | 1464..2077 | 100 | -> | Plus |
2R | 23526814..23526974 | 2078..2238 | 100 | -> | Plus |
2R | 23527035..23527635 | 2239..2841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:32 Download gff for
BO11233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19411873..19411935 | 17..79 | 100 | -> | Plus |
arm_2R | 19411993..19413044 | 80..1131 | 100 | -> | Plus |
arm_2R | 19413107..19413241 | 1132..1266 | 100 | -> | Plus |
arm_2R | 19413302..19413436 | 1267..1401 | 100 | -> | Plus |
arm_2R | 19413500..19413561 | 1402..1463 | 100 | -> | Plus |
arm_2R | 19413619..19414232 | 1464..2077 | 100 | -> | Plus |
arm_2R | 19414337..19414497 | 2078..2238 | 100 | -> | Plus |
arm_2R | 19414558..19415158 | 2239..2841 | 99 | | Plus |
BO11233.pep Sequence
Translation from 16 to 2857
> BO11233.pep
MATIGNKINNSYESEPSTGSGSSLSENNESHISDEDHMNLPYLMKPKALS
SQPIKETPTPPNPKTGSQESQFLGFGDSPYGQVNKRLYGSQLQNLKLPEV
EPPAVRRPSPGKIVFPRFYDTLIEENSCNAVDMAVSVATTATTTTGSLSF
DGKIKSLTAKPEIQDKPGPSNATNPRLSNVLETSLNTSQQKFNNERSPDL
FADSDDEADNDEQPEKEPPTRLEDLPEVLEESQCTSDARARSSLNAPTES
SFVDEQTMDLSSTQLNANDPRSHFLENCRRERELYRRIRRCLQGVRPPPS
VTAPDVDVIKMVLSMKSNVLNFLSKDSPPSTPRIEDSGISETTSLFRPSH
SLSEAQNMGWRDVLGVRHHGLSYNLNKAAEQNEYLSMSVVDRYVGVETAT
SYVRSPSSAKKRNMRMKMLTQSPGNRLSHLAKRRAIFSSANLATNSQKLN
SSIGPQIMLDKKKVRNKRKATPKRKTPGSKKKARKTPSSSARKRLYRTDL
IKPGPSRETSKRALFQSPAKTLQQQQLMPPKPLFKPEIANRVERSKRALF
SPDHQGSSNQLESILKRKRNACDDDEDSADLASQSSKLFRAESSGPSGLT
PRALKIKSQSFCIGAGSSTAGVQLKLAQHAAATPGQTRLSLGLSGSSSNL
VNPASFASGTPLASKLHRAHSEMSATPNSSMTDNQRKKLLWAVSQALQEK
KITPKHEQFRQHAADLTRIVKRIFQEFYLGHSSSNSETLLRLAKKFAFSV
IAGKNADDVYLQARSQECEAKRLSSTRLSGYIGPEEFAQRKLLLSQTSVV
GSAAGSARSLHNIFGSENSIDSFGLSQMSLPTNACSETQSSIVDRISEDL
FCKERQPIRPNASLQNSSSKSNLGGLALRENMDCEARRSAQKNFTGKDQQ
NISPYFGGGGSNSSARKFQMPPVGNSNHSGGKAKRQISFDCASFLDH
BO11233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mi-PA | 941 | CG5360-PA | 1..941 | 1..941 | 4788 | 100 | Plus |