Clone BO11235 Report

Search the DGRC for BO11235

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptemb-RA
Protein status:BO11235.pep:
Sequenced Size:3223

Clone Sequence Records

BO11235.3prime Sequence

876 bp (755 high quality bases) assembled on 2006-04-19

> BO11235.3prime
ATGGTCTAGAAAGCTTGCTTCGTCCTGCATATCCTCGGGCAACTCGTGCG
GATTCAACATTCCTGGAATATTACGCTGCATCTGATGTTTATTTGACTGC
TCCTCGGCCAGAGCCGCTTCACGCTCTTCCAAGTACAGATCGGAATCGTC
CTCGCCGGTGGCCTCGCGAATCTGTATGAGAAAATCTCTCAAATGCTCCT
TAAATGCTTGCACATTCTCGTCTAAATTGAATAAGCCAGTGACAAAGACT
TTGACCTGATTATCGGACAGATGGGTAAATGCCGATTTCAGCAGCGACGC
GACATATTCCTGTATGAATATCATATTATCCGGAATCGGACCCAGGTTCA
CCGTAATCTTCCTGTTCTCCACCAGTGAGAACATGTACGCCAGAATGATG
GCATGATTGGGCAACCCGGCCGTGTGTGAGGTGTCAGTGACCACCGAAAA
TATCTGCATTAGAATATCTGTAAAGTACGTCTGATAGAAGCTCTGCGCCG
CACCGGGATGCTGATCTAAGTTTTGAAGCATCTTAAATAGGATATTCAAT
CCCATGTCGGCCACATTCCGCATGGTATGCTTGAATGCCCACACCACCGA
GTCGAAGACCAGTTTGAACTGAGCCGGCGGTATATTAAGGAACGCCTTAA
AGCAGTGCGCATTGACCGCCTGCAGTAGCTCGTAGAAACTAAGTCTGTGC
TGTGGGAAATCTTCAAAGTTCTTGTTGATCATGTCCAGCGTGCACTCGAA
GACGGCGTCAAATATTTTTGGTACTTCATTTGTGATATGCTGACGCAGTT
TATGCACAATGATTGCCATCGCACTTAAAACCTTGGGCTCCCGTGCCGAT
GGAACTTTGCAGCGCTGAATATCTAG

BO11235.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13387-PA 3192 emb-RA 2340..3189 868..19 4250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
emb-RB 3919 CG13387-RB 2703..3560 876..19 4260 99.8 Minus
emb-RA 4492 CG13387-RA 2703..3560 876..19 4260 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8407316..8407689 538..165 1855 99.7 Minus
2L 23513712 2L 8406922..8407256 866..532 1675 100 Minus
2L 23513712 2L 8407775..8407921 165..19 735 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:57:46 has no hits.

BO11235.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:41 Download gff for BO11235.3prime
Subject Subject Range Query Range Percent Splice Strand
emb-PA 2332..3192 18..876 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:38 Download gff for BO11235.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13387-PA 2332..3192 18..876 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:08 Download gff for BO11235.3prime
Subject Subject Range Query Range Percent Splice Strand
emb-RA 2703..3560 19..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:26 Download gff for BO11235.3prime
Subject Subject Range Query Range Percent Splice Strand
emb-RA 2703..3560 19..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:26 Download gff for BO11235.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8406915..8407256 532..872 99 -> Minus
2L 8407323..8407688 166..531 100 -> Minus
2L 8407775..8407921 19..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:08 Download gff for BO11235.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8406915..8407256 532..872 99 -> Minus
arm_2L 8407323..8407688 166..531 100 -> Minus
arm_2L 8407775..8407921 19..165 100   Minus

BO11235.5prime Sequence

868 bp (819 high quality bases) assembled on 2006-04-19

> BO11235.5prime
GAAGTTATCAGTCGACATGGCGACAATGTTGACATCGGACGAGGCGGGCA
AGCTGCTCGACTTCTCCCAGAAGCTGGACATTAATCTGCTGGACAAGATC
GTCGAGGTTGTGTACACAGCGCAGGGCGAGCAGTTGCGTCTAGCCCAGAG
CATACTGACCACGCTGAAGGAGCATCCAGAGGCATGGACGCGGGTGGACA
GCATATTGGAGTACTCACAGAACCAGCGGACCAAGTTTTATGCTCTGCAA
ATCCTCGAGGAGGTCATCAAAACGCGCTGGAAGGTCCTGCCGCGCAACCA
GTGCGAGGGAATCAAGAAGTATGTGGTCAGTCTTATCATCAAGACCTCGT
CGGATCCCATTGTTATGGAGCAGAACAAAGTGTATCTGAATAAGCTAAAC
ATGATTCTGGTCCACATTCTAAAGCGCGAATGGCCACGCAACTGGGAGAC
ATTCATCAGTGACATTGTCGGTGCGTCGAAAACGAACGAGAGCCTGTGCA
TGAACAACATGGTAATCCTGAAGAACCTTAGTGAGGAGGTGTTCGACTTT
TCGCAGGGTCAGATCACGCAGACTAAGGCCAAGCACCTGAAAGACACCAT
GTGCTCGGAGTTCTCTCAGATCTTTACACTATGCTCCTTCGTGCTGGAGA
ACTCGATGAATGCCGCCCTAATCCATGTCACGCTGGAGACTCTGCTGAGG
TTCCTTAACTGGATACCGCTGGGCTACATCTTTGAAACGCAGCAAATTGA
AACGCTGATATTCAAATTCCTTAGCGTACCCATGTTCCGCAATGTGACCC
TGAAGTGTCTGTCCGAGATCGCCGGCCTGACTGCGGCAAACTACGACGAG
AATTTCGCGACGCTCTTC

BO11235.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13387-PA 3192 emb-RA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
emb-RB 3919 CG13387-RB 372..1223 17..868 4260 100 Plus
emb-RA 4492 CG13387-RA 372..1223 17..868 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8404288..8405139 17..868 4260 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:03:59 has no hits.

BO11235.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:42 Download gff for BO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
emb-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:39 Download gff for BO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13387-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:54:03 Download gff for BO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
emb-RA 368..1223 10..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:48 Download gff for BO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
emb-RA 368..1223 10..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:48 Download gff for BO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8404284..8405139 10..868 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:54:03 Download gff for BO11235.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8404284..8405139 10..868 99   Plus

BO11235.complete Sequence

3223 bp assembled on 2008-01-16

GenBank Submission: FJ632036

> BO11235.complete
GAAGTTATCAGTCGACATGGCGACAATGTTGACATCGGACGAGGCGGGCA
AGCTGCTCGACTTCTCCCAGAAGCTGGACATTAATCTGCTGGACAAGATC
GTCGAGGTTGTGTACACAGCGCAGGGCGAGCAGTTGCGTCTAGCCCAGAG
CATACTGACCACGCTGAAGGAGCATCCAGAGGCATGGACGCGGGTGGACA
GCATATTGGAGTACTCACAGAACCAGCGGACCAAGTTTTATGCTCTGCAA
ATCCTCGAGGAGGTCATCAAAACGCGCTGGAAGGTCCTGCCGCGCAACCA
GTGCGAGGGAATCAAGAAGTATGTGGTCAGTCTTATCATCAAGACCTCGT
CGGATCCCATTGTTATGGAGCAGAACAAAGTGTATCTGAATAAGCTAAAC
ATGATTCTGGTCCACATTCTAAAGCGCGAATGGCCACGCAACTGGGAGAC
ATTCATCAGTGACATTGTCGGTGCGTCGAAAACGAACGAGAGCCTGTGCA
TGAACAACATGGTAATCCTGAAGAACCTTAGTGAGGAGGTGTTCGACTTT
TCGCAGGGTCAGATCACGCAGACTAAGGCCAAGCACCTGAAAGACACCAT
GTGCTCGGAGTTCTCTCAGATCTTTACACTATGCTCCTTCGTGCTGGAGA
ACTCGATGAATGCCGCCCTAATCCATGTCACGCTGGAGACTCTGCTGAGG
TTCCTTAACTGGATACCGCTGGGCTACATCTTTGAAACGCAGCAAATTGA
AACGCTGATATTCAAATTCCTTAGCGTACCCATGTTCCGCAATGTGACCC
TGAAGTGTCTGTCCGAGATCGCCGGCCTGACTGCGGCAAACTACGACGAG
AATTTCGCGACGCTCTTCAAGGACACGATGGTTCAGTTGGAACAGATAGT
CGGCCAGAATATGAACATGAACCATGTGTTTAAGCATGGTTCCGACACAG
AGCAGGAGCTGGTCCTTAATTTGGCCATGTTCCTGTGCACCTTCCTCAAG
GAGCACGGCAAACTGGTGGAGGATGCCAAGTATGTGGACTACCTGAATCA
GGCGCTCATGTATTTGGTGATGATTAGCGAGGTGGAGGACGTGGAAGTAT
TCAAGATCTGTCTGGAATACTGGAACAGCCTTGTGGAGGATCTATACAAT
TCGGAATTCTTCCACCCCACCCTGGAGTCTACAAAGAGGCAACAAGTGTA
TCCCCGTCGACGTTTCTACGCCCCCATCCTGTCCAAAGTGCGATTCATTA
TGATCTCGCGCATGGCCAAGCCGGAGGAGGTGCTGGTGGTGGAGAACGAA
AACGGGGAAGTGGTGCGCGAGTTCATGAAGGACACAAACTCAATAAACCT
GTACAAGAACATGCGCGAAACGCTGGTCTTTCTTACCCATTTGGACTCTG
TGGACACGGACCGCATCATGACGCTAAAGCTGCTTAATCAGGTGAACGGA
TCGGAATTCTCTTGGAAGAACCTGAACACGTTGTGCTGGGCCATTGGTTC
CATATCCGGTGCTTTTTGTGAAGAGGACGAAAAACGGTTCCTGGTCACCG
TGATCAAGGATCTATTAGGCCTGTGCGAACAGAAGAAGGGCAAGGACAAC
AAGGCCATTATTGCCTCCAATATCATGTATGTGGTGGGACAGTATCCACG
CTTCCTGCGCGCCCATTGGAAGTTCCTCAAGACGGTGGTAAACAAACTCT
TCGAATTTATGCACGAAACGCACGATGGTGTCCAGGATATGGCATGCGAT
ACGTTCATCAAGATAGCCATCAAATGCCGCCGCTACTTTGTCACCATCCA
GCCGAATGAGGCATGCACCTTTATTGACGAGATTCTCACAACAATGAGCA
GCATCATTTGTGATCTGCAGCCGCAGCAGGTTCACACGTTCTATGAAGCT
GTCGGCTACATGATCTCCGCCCAGGTGGATCAGGTACAACAGGACGTCCT
CATCGAGAGGTACATGCAACTGCCCAACCAGGTGTGGGATGACATCATCT
CCCGCGCCTCGAAAAACGTTGACTTCTTGAAGAACATGACCGCTGTCAAG
CAGCTGGGCAGCATCCTTAAAACGAATGTGGCTGCCTGCAAAGCCCTGGG
TCACGCGTATGTCATTCAACTGGGCCGCATATATCTGGACATGCTGAATG
TGTACAAGATAACATCAGAGAATATCATTCAGGCCATCGAGGTGAATGGC
GTCAATGTGAACAATCAGCCCCTGATCAAAACCATGCATGTGGTCAAGAA
GGAGACGCTTAACTTGATATCCGAGTGGGTGTCTCGTTCCAACGACAATC
AGTTGGTGATGGACAATTTCATACCGCCTTTGCTGGACGCTATACTGCTA
GATTATCAGCGCTGCAAAGTTCCATCGGCACGGGAGCCCAAGGTTTTAAG
TGCGATGGCAATCATTGTGCATAAACTGCGTCAGCATATCACAAATGAAG
TACCAAAAATATTTGACGCCGTCTTCGAGTGCACGCTGGACATGATCAAC
AAGAACTTTGAAGATTTCCCACAGCACAGACTTAGTTTCTACGAGCTACT
GCAGGCGGTCAATGCGCACTGCTTTAAGGCGTTCCTTAATATACCGCCGG
CTCAGTTCAAACTGGTCTTCGACTCGGTGGTGTGGGCATTCAAGCATACC
ATGCGGAATGTGGCCGACATGGGATTGAATATCCTATTTAAGATGCTTCA
AAACTTAGATCAGCATCCCGGTGCGGCGCAGAGCTTCTATCAGACGTACT
TTACAGATATTCTAATGCAGATATTTTCGGTGGTCACTGACACCTCACAC
ACGGCCGGGTTGCCCAATCATGCCATCATTCTGGCGTACATGTTCTCACT
GGTGGAGAACAGGAAGATTACGGTGAACCTGGGTCCGATTCCGGATAATA
TGATATTCATACAGGAATATGTCGCGTCGCTGCTGAAATCGGCATTTACC
CATCTGTCCGATAATCAGGTCAAAGTCTTTGTCACTGGCTTATTCAATTT
AGACGAGAATGTGCAAGCATTTAAGGAGCATTTGAGAGATTTTCTCATAC
AGATTCGCGAGGCCACCGGCGAGGACGATTCCGATCTGTACTTGGAAGAG
CGTGAAGCGGCTCTGGCCGAGGAGCAGTCAAATAAACATCAGATGCAGCG
TAATATTCCAGGAATGTTGAATCCGCACGAGTTGCCCGAGGATATGCAGG
ACGAAGCAAGCTTTCTAGACCAT

BO11235.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
emb-RB 3192 CG13387-PB 1..3189 17..3205 15945 100 Plus
emb-RA 3192 CG13387-PA 1..3189 17..3205 15945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
emb-RB 3919 CG13387-RB 372..3560 17..3205 15945 100 Plus
emb-RA 4492 CG13387-RA 372..3560 17..3205 15945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8404288..8405782 17..1511 7475 100 Plus
2L 23513712 2L 8406374..8406855 1878..2359 2410 100 Plus
2L 23513712 2L 8405915..8406288 1508..1881 1870 100 Plus
2L 23513712 2L 8407316..8407689 2686..3059 1855 99.7 Plus
2L 23513712 2L 8406922..8407256 2358..2692 1675 100 Plus
2L 23513712 2L 8407775..8407921 3059..3205 735 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:33:06 has no hits.

BO11235.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:51 Download gff for BO11235.complete
Subject Subject Range Query Range Percent Splice Strand
emb-RA 1..3192 17..3206 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:12 Download gff for BO11235.complete
Subject Subject Range Query Range Percent Splice Strand
emb-RA 370..3558 17..3207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:53 Download gff for BO11235.complete
Subject Subject Range Query Range Percent Splice Strand
emb-RA 372..3560 17..3207 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:51 Download gff for BO11235.complete
Subject Subject Range Query Range Percent Splice Strand
emb-RA 366..3558 10..3205 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:49 Download gff for BO11235.complete
Subject Subject Range Query Range Percent Splice Strand
emb-RA 372..3560 17..3207 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:49 Download gff for BO11235.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8407323..8407688 2693..3058 100 -> Plus
2L 8407775..8407921 3059..3207 98   Plus
2L 8404288..8405779 17..1508 100 -> Plus
2L 8405916..8406286 1509..1879 100 -> Plus
2L 8406376..8406855 1880..2359 100 -> Plus
2L 8406924..8407256 2360..2692 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:53 Download gff for BO11235.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8404288..8405779 17..1508 100 -> Plus
arm_2L 8405916..8406286 1509..1879 100 -> Plus
arm_2L 8406376..8406855 1880..2359 100 -> Plus
arm_2L 8406924..8407256 2360..2692 100 -> Plus
arm_2L 8407323..8407688 2693..3058 100 -> Plus
arm_2L 8407775..8407921 3059..3207 98   Plus

BO11235.pep Sequence

Translation from 16 to 3223

> BO11235.pep
MATMLTSDEAGKLLDFSQKLDINLLDKIVEVVYTAQGEQLRLAQSILTTL
KEHPEAWTRVDSILEYSQNQRTKFYALQILEEVIKTRWKVLPRNQCEGIK
KYVVSLIIKTSSDPIVMEQNKVYLNKLNMILVHILKREWPRNWETFISDI
VGASKTNESLCMNNMVILKNLSEEVFDFSQGQITQTKAKHLKDTMCSEFS
QIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIFETQQIETLIFK
FLSVPMFRNVTLKCLSEIAGLTAANYDENFATLFKDTMVQLEQIVGQNMN
MNHVFKHGSDTEQELVLNLAMFLCTFLKEHGKLVEDAKYVDYLNQALMYL
VMISEVEDVEVFKICLEYWNSLVEDLYNSEFFHPTLESTKRQQVYPRRRF
YAPILSKVRFIMISRMAKPEEVLVVENENGEVVREFMKDTNSINLYKNMR
ETLVFLTHLDSVDTDRIMTLKLLNQVNGSEFSWKNLNTLCWAIGSISGAF
CEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAH
WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAIKCRRYFVTIQPNEAC
TFIDEILTTMSSIICDLQPQQVHTFYEAVGYMISAQVDQVQQDVLIERYM
QLPNQVWDDIISRASKNVDFLKNMTAVKQLGSILKTNVAACKALGHAYVI
QLGRIYLDMLNVYKITSENIIQAIEVNGVNVNNQPLIKTMHVVKKETLNL
ISEWVSRSNDNQLVMDNFIPPLLDAILLDYQRCKVPSAREPKVLSAMAII
VHKLRQHITNEVPKIFDAVFECTLDMINKNFEDFPQHRLSFYELLQAVNA
HCFKAFLNIPPAQFKLVFDSVVWAFKHTMRNVADMGLNILFKMLQNLDQH
PGAAQSFYQTYFTDILMQIFSVVTDTSHTAGLPNHAIILAYMFSLVENRK
ITVNLGPIPDNMIFIQEYVASLLKSAFTHLSDNQVKVFVTGLFNLDENVQ
AFKEHLRDFLIQIREATGEDDSDLYLEEREAALAEEQSNKHQMQRNIPGM
LNPHELPEDMQDEASFLDH

BO11235.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
emb-PB 1063 CG13387-PB 1..1063 1..1063 5481 100 Plus
emb-PA 1063 CG13387-PA 1..1063 1..1063 5481 100 Plus