Clone Sequence Records
BO11235.3prime Sequence
876 bp (755 high quality bases) assembled on 2006-04-19
> BO11235.3prime
ATGGTCTAGAAAGCTTGCTTCGTCCTGCATATCCTCGGGCAACTCGTGCG
GATTCAACATTCCTGGAATATTACGCTGCATCTGATGTTTATTTGACTGC
TCCTCGGCCAGAGCCGCTTCACGCTCTTCCAAGTACAGATCGGAATCGTC
CTCGCCGGTGGCCTCGCGAATCTGTATGAGAAAATCTCTCAAATGCTCCT
TAAATGCTTGCACATTCTCGTCTAAATTGAATAAGCCAGTGACAAAGACT
TTGACCTGATTATCGGACAGATGGGTAAATGCCGATTTCAGCAGCGACGC
GACATATTCCTGTATGAATATCATATTATCCGGAATCGGACCCAGGTTCA
CCGTAATCTTCCTGTTCTCCACCAGTGAGAACATGTACGCCAGAATGATG
GCATGATTGGGCAACCCGGCCGTGTGTGAGGTGTCAGTGACCACCGAAAA
TATCTGCATTAGAATATCTGTAAAGTACGTCTGATAGAAGCTCTGCGCCG
CACCGGGATGCTGATCTAAGTTTTGAAGCATCTTAAATAGGATATTCAAT
CCCATGTCGGCCACATTCCGCATGGTATGCTTGAATGCCCACACCACCGA
GTCGAAGACCAGTTTGAACTGAGCCGGCGGTATATTAAGGAACGCCTTAA
AGCAGTGCGCATTGACCGCCTGCAGTAGCTCGTAGAAACTAAGTCTGTGC
TGTGGGAAATCTTCAAAGTTCTTGTTGATCATGTCCAGCGTGCACTCGAA
GACGGCGTCAAATATTTTTGGTACTTCATTTGTGATATGCTGACGCAGTT
TATGCACAATGATTGCCATCGCACTTAAAACCTTGGGCTCCCGTGCCGAT
GGAACTTTGCAGCGCTGAATATCTAG
BO11235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13387-PA | 3192 | emb-RA | 2340..3189 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
emb-RB | 3919 | CG13387-RB | 2703..3560 | 876..19 | 4260 | 99.8 | Minus |
emb-RA | 4492 | CG13387-RA | 2703..3560 | 876..19 | 4260 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8407316..8407689 | 538..165 | 1855 | 99.7 | Minus |
2L | 23513712 | 2L | 8406922..8407256 | 866..532 | 1675 | 100 | Minus |
2L | 23513712 | 2L | 8407775..8407921 | 165..19 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:57:46 has no hits.
BO11235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:41 Download gff for
BO11235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-PA | 2332..3192 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:38 Download gff for
BO11235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13387-PA | 2332..3192 | 18..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:54:08 Download gff for
BO11235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-RA | 2703..3560 | 19..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:26 Download gff for
BO11235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-RA | 2703..3560 | 19..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:26 Download gff for
BO11235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8406915..8407256 | 532..872 | 99 | -> | Minus |
2L | 8407323..8407688 | 166..531 | 100 | -> | Minus |
2L | 8407775..8407921 | 19..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:54:08 Download gff for
BO11235.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8406915..8407256 | 532..872 | 99 | -> | Minus |
arm_2L | 8407323..8407688 | 166..531 | 100 | -> | Minus |
arm_2L | 8407775..8407921 | 19..165 | 100 | | Minus |
BO11235.5prime Sequence
868 bp (819 high quality bases) assembled on 2006-04-19
> BO11235.5prime
GAAGTTATCAGTCGACATGGCGACAATGTTGACATCGGACGAGGCGGGCA
AGCTGCTCGACTTCTCCCAGAAGCTGGACATTAATCTGCTGGACAAGATC
GTCGAGGTTGTGTACACAGCGCAGGGCGAGCAGTTGCGTCTAGCCCAGAG
CATACTGACCACGCTGAAGGAGCATCCAGAGGCATGGACGCGGGTGGACA
GCATATTGGAGTACTCACAGAACCAGCGGACCAAGTTTTATGCTCTGCAA
ATCCTCGAGGAGGTCATCAAAACGCGCTGGAAGGTCCTGCCGCGCAACCA
GTGCGAGGGAATCAAGAAGTATGTGGTCAGTCTTATCATCAAGACCTCGT
CGGATCCCATTGTTATGGAGCAGAACAAAGTGTATCTGAATAAGCTAAAC
ATGATTCTGGTCCACATTCTAAAGCGCGAATGGCCACGCAACTGGGAGAC
ATTCATCAGTGACATTGTCGGTGCGTCGAAAACGAACGAGAGCCTGTGCA
TGAACAACATGGTAATCCTGAAGAACCTTAGTGAGGAGGTGTTCGACTTT
TCGCAGGGTCAGATCACGCAGACTAAGGCCAAGCACCTGAAAGACACCAT
GTGCTCGGAGTTCTCTCAGATCTTTACACTATGCTCCTTCGTGCTGGAGA
ACTCGATGAATGCCGCCCTAATCCATGTCACGCTGGAGACTCTGCTGAGG
TTCCTTAACTGGATACCGCTGGGCTACATCTTTGAAACGCAGCAAATTGA
AACGCTGATATTCAAATTCCTTAGCGTACCCATGTTCCGCAATGTGACCC
TGAAGTGTCTGTCCGAGATCGCCGGCCTGACTGCGGCAAACTACGACGAG
AATTTCGCGACGCTCTTC
BO11235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13387-PA | 3192 | emb-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
emb-RB | 3919 | CG13387-RB | 372..1223 | 17..868 | 4260 | 100 | Plus |
emb-RA | 4492 | CG13387-RA | 372..1223 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8404288..8405139 | 17..868 | 4260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:03:59 has no hits.
BO11235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:42 Download gff for
BO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:39 Download gff for
BO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13387-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:54:03 Download gff for
BO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-RA | 368..1223 | 10..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:48 Download gff for
BO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-RA | 368..1223 | 10..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:48 Download gff for
BO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8404284..8405139 | 10..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:54:03 Download gff for
BO11235.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8404284..8405139 | 10..868 | 99 | | Plus |
BO11235.complete Sequence
3223 bp assembled on 2008-01-16
GenBank Submission: FJ632036
> BO11235.complete
GAAGTTATCAGTCGACATGGCGACAATGTTGACATCGGACGAGGCGGGCA
AGCTGCTCGACTTCTCCCAGAAGCTGGACATTAATCTGCTGGACAAGATC
GTCGAGGTTGTGTACACAGCGCAGGGCGAGCAGTTGCGTCTAGCCCAGAG
CATACTGACCACGCTGAAGGAGCATCCAGAGGCATGGACGCGGGTGGACA
GCATATTGGAGTACTCACAGAACCAGCGGACCAAGTTTTATGCTCTGCAA
ATCCTCGAGGAGGTCATCAAAACGCGCTGGAAGGTCCTGCCGCGCAACCA
GTGCGAGGGAATCAAGAAGTATGTGGTCAGTCTTATCATCAAGACCTCGT
CGGATCCCATTGTTATGGAGCAGAACAAAGTGTATCTGAATAAGCTAAAC
ATGATTCTGGTCCACATTCTAAAGCGCGAATGGCCACGCAACTGGGAGAC
ATTCATCAGTGACATTGTCGGTGCGTCGAAAACGAACGAGAGCCTGTGCA
TGAACAACATGGTAATCCTGAAGAACCTTAGTGAGGAGGTGTTCGACTTT
TCGCAGGGTCAGATCACGCAGACTAAGGCCAAGCACCTGAAAGACACCAT
GTGCTCGGAGTTCTCTCAGATCTTTACACTATGCTCCTTCGTGCTGGAGA
ACTCGATGAATGCCGCCCTAATCCATGTCACGCTGGAGACTCTGCTGAGG
TTCCTTAACTGGATACCGCTGGGCTACATCTTTGAAACGCAGCAAATTGA
AACGCTGATATTCAAATTCCTTAGCGTACCCATGTTCCGCAATGTGACCC
TGAAGTGTCTGTCCGAGATCGCCGGCCTGACTGCGGCAAACTACGACGAG
AATTTCGCGACGCTCTTCAAGGACACGATGGTTCAGTTGGAACAGATAGT
CGGCCAGAATATGAACATGAACCATGTGTTTAAGCATGGTTCCGACACAG
AGCAGGAGCTGGTCCTTAATTTGGCCATGTTCCTGTGCACCTTCCTCAAG
GAGCACGGCAAACTGGTGGAGGATGCCAAGTATGTGGACTACCTGAATCA
GGCGCTCATGTATTTGGTGATGATTAGCGAGGTGGAGGACGTGGAAGTAT
TCAAGATCTGTCTGGAATACTGGAACAGCCTTGTGGAGGATCTATACAAT
TCGGAATTCTTCCACCCCACCCTGGAGTCTACAAAGAGGCAACAAGTGTA
TCCCCGTCGACGTTTCTACGCCCCCATCCTGTCCAAAGTGCGATTCATTA
TGATCTCGCGCATGGCCAAGCCGGAGGAGGTGCTGGTGGTGGAGAACGAA
AACGGGGAAGTGGTGCGCGAGTTCATGAAGGACACAAACTCAATAAACCT
GTACAAGAACATGCGCGAAACGCTGGTCTTTCTTACCCATTTGGACTCTG
TGGACACGGACCGCATCATGACGCTAAAGCTGCTTAATCAGGTGAACGGA
TCGGAATTCTCTTGGAAGAACCTGAACACGTTGTGCTGGGCCATTGGTTC
CATATCCGGTGCTTTTTGTGAAGAGGACGAAAAACGGTTCCTGGTCACCG
TGATCAAGGATCTATTAGGCCTGTGCGAACAGAAGAAGGGCAAGGACAAC
AAGGCCATTATTGCCTCCAATATCATGTATGTGGTGGGACAGTATCCACG
CTTCCTGCGCGCCCATTGGAAGTTCCTCAAGACGGTGGTAAACAAACTCT
TCGAATTTATGCACGAAACGCACGATGGTGTCCAGGATATGGCATGCGAT
ACGTTCATCAAGATAGCCATCAAATGCCGCCGCTACTTTGTCACCATCCA
GCCGAATGAGGCATGCACCTTTATTGACGAGATTCTCACAACAATGAGCA
GCATCATTTGTGATCTGCAGCCGCAGCAGGTTCACACGTTCTATGAAGCT
GTCGGCTACATGATCTCCGCCCAGGTGGATCAGGTACAACAGGACGTCCT
CATCGAGAGGTACATGCAACTGCCCAACCAGGTGTGGGATGACATCATCT
CCCGCGCCTCGAAAAACGTTGACTTCTTGAAGAACATGACCGCTGTCAAG
CAGCTGGGCAGCATCCTTAAAACGAATGTGGCTGCCTGCAAAGCCCTGGG
TCACGCGTATGTCATTCAACTGGGCCGCATATATCTGGACATGCTGAATG
TGTACAAGATAACATCAGAGAATATCATTCAGGCCATCGAGGTGAATGGC
GTCAATGTGAACAATCAGCCCCTGATCAAAACCATGCATGTGGTCAAGAA
GGAGACGCTTAACTTGATATCCGAGTGGGTGTCTCGTTCCAACGACAATC
AGTTGGTGATGGACAATTTCATACCGCCTTTGCTGGACGCTATACTGCTA
GATTATCAGCGCTGCAAAGTTCCATCGGCACGGGAGCCCAAGGTTTTAAG
TGCGATGGCAATCATTGTGCATAAACTGCGTCAGCATATCACAAATGAAG
TACCAAAAATATTTGACGCCGTCTTCGAGTGCACGCTGGACATGATCAAC
AAGAACTTTGAAGATTTCCCACAGCACAGACTTAGTTTCTACGAGCTACT
GCAGGCGGTCAATGCGCACTGCTTTAAGGCGTTCCTTAATATACCGCCGG
CTCAGTTCAAACTGGTCTTCGACTCGGTGGTGTGGGCATTCAAGCATACC
ATGCGGAATGTGGCCGACATGGGATTGAATATCCTATTTAAGATGCTTCA
AAACTTAGATCAGCATCCCGGTGCGGCGCAGAGCTTCTATCAGACGTACT
TTACAGATATTCTAATGCAGATATTTTCGGTGGTCACTGACACCTCACAC
ACGGCCGGGTTGCCCAATCATGCCATCATTCTGGCGTACATGTTCTCACT
GGTGGAGAACAGGAAGATTACGGTGAACCTGGGTCCGATTCCGGATAATA
TGATATTCATACAGGAATATGTCGCGTCGCTGCTGAAATCGGCATTTACC
CATCTGTCCGATAATCAGGTCAAAGTCTTTGTCACTGGCTTATTCAATTT
AGACGAGAATGTGCAAGCATTTAAGGAGCATTTGAGAGATTTTCTCATAC
AGATTCGCGAGGCCACCGGCGAGGACGATTCCGATCTGTACTTGGAAGAG
CGTGAAGCGGCTCTGGCCGAGGAGCAGTCAAATAAACATCAGATGCAGCG
TAATATTCCAGGAATGTTGAATCCGCACGAGTTGCCCGAGGATATGCAGG
ACGAAGCAAGCTTTCTAGACCAT
BO11235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
emb-RB | 3192 | CG13387-PB | 1..3189 | 17..3205 | 15945 | 100 | Plus |
emb-RA | 3192 | CG13387-PA | 1..3189 | 17..3205 | 15945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
emb-RB | 3919 | CG13387-RB | 372..3560 | 17..3205 | 15945 | 100 | Plus |
emb-RA | 4492 | CG13387-RA | 372..3560 | 17..3205 | 15945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8404288..8405782 | 17..1511 | 7475 | 100 | Plus |
2L | 23513712 | 2L | 8406374..8406855 | 1878..2359 | 2410 | 100 | Plus |
2L | 23513712 | 2L | 8405915..8406288 | 1508..1881 | 1870 | 100 | Plus |
2L | 23513712 | 2L | 8407316..8407689 | 2686..3059 | 1855 | 99.7 | Plus |
2L | 23513712 | 2L | 8406922..8407256 | 2358..2692 | 1675 | 100 | Plus |
2L | 23513712 | 2L | 8407775..8407921 | 3059..3205 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:33:06 has no hits.
BO11235.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:51 Download gff for
BO11235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-RA | 1..3192 | 17..3206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:12 Download gff for
BO11235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-RA | 370..3558 | 17..3207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:53 Download gff for
BO11235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-RA | 372..3560 | 17..3207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:51 Download gff for
BO11235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-RA | 366..3558 | 10..3205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:49 Download gff for
BO11235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emb-RA | 372..3560 | 17..3207 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:49 Download gff for
BO11235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8407323..8407688 | 2693..3058 | 100 | -> | Plus |
2L | 8407775..8407921 | 3059..3207 | 98 | | Plus |
2L | 8404288..8405779 | 17..1508 | 100 | -> | Plus |
2L | 8405916..8406286 | 1509..1879 | 100 | -> | Plus |
2L | 8406376..8406855 | 1880..2359 | 100 | -> | Plus |
2L | 8406924..8407256 | 2360..2692 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:53 Download gff for
BO11235.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8404288..8405779 | 17..1508 | 100 | -> | Plus |
arm_2L | 8405916..8406286 | 1509..1879 | 100 | -> | Plus |
arm_2L | 8406376..8406855 | 1880..2359 | 100 | -> | Plus |
arm_2L | 8406924..8407256 | 2360..2692 | 100 | -> | Plus |
arm_2L | 8407323..8407688 | 2693..3058 | 100 | -> | Plus |
arm_2L | 8407775..8407921 | 3059..3207 | 98 | | Plus |
BO11235.pep Sequence
Translation from 16 to 3223
> BO11235.pep
MATMLTSDEAGKLLDFSQKLDINLLDKIVEVVYTAQGEQLRLAQSILTTL
KEHPEAWTRVDSILEYSQNQRTKFYALQILEEVIKTRWKVLPRNQCEGIK
KYVVSLIIKTSSDPIVMEQNKVYLNKLNMILVHILKREWPRNWETFISDI
VGASKTNESLCMNNMVILKNLSEEVFDFSQGQITQTKAKHLKDTMCSEFS
QIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIFETQQIETLIFK
FLSVPMFRNVTLKCLSEIAGLTAANYDENFATLFKDTMVQLEQIVGQNMN
MNHVFKHGSDTEQELVLNLAMFLCTFLKEHGKLVEDAKYVDYLNQALMYL
VMISEVEDVEVFKICLEYWNSLVEDLYNSEFFHPTLESTKRQQVYPRRRF
YAPILSKVRFIMISRMAKPEEVLVVENENGEVVREFMKDTNSINLYKNMR
ETLVFLTHLDSVDTDRIMTLKLLNQVNGSEFSWKNLNTLCWAIGSISGAF
CEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAH
WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAIKCRRYFVTIQPNEAC
TFIDEILTTMSSIICDLQPQQVHTFYEAVGYMISAQVDQVQQDVLIERYM
QLPNQVWDDIISRASKNVDFLKNMTAVKQLGSILKTNVAACKALGHAYVI
QLGRIYLDMLNVYKITSENIIQAIEVNGVNVNNQPLIKTMHVVKKETLNL
ISEWVSRSNDNQLVMDNFIPPLLDAILLDYQRCKVPSAREPKVLSAMAII
VHKLRQHITNEVPKIFDAVFECTLDMINKNFEDFPQHRLSFYELLQAVNA
HCFKAFLNIPPAQFKLVFDSVVWAFKHTMRNVADMGLNILFKMLQNLDQH
PGAAQSFYQTYFTDILMQIFSVVTDTSHTAGLPNHAIILAYMFSLVENRK
ITVNLGPIPDNMIFIQEYVASLLKSAFTHLSDNQVKVFVTGLFNLDENVQ
AFKEHLRDFLIQIREATGEDDSDLYLEEREAALAEEQSNKHQMQRNIPGM
LNPHELPEDMQDEASFLDH
BO11235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
emb-PB | 1063 | CG13387-PB | 1..1063 | 1..1063 | 5481 | 100 | Plus |
emb-PA | 1063 | CG13387-PA | 1..1063 | 1..1063 | 5481 | 100 | Plus |