Clone Sequence Records
BO11240.3prime Sequence
769 bp (751 high quality bases) assembled on 2006-04-19
> BO11240.3prime
ATGGTCTAGAAAGCTTGCATGAAACTCATCCCCGCTGTTGGGCAGCATGG
AAATAGCTGATTGAGCTTGCATTTGGGCCTTATTGAAGCTATTGACAGCT
CCAGCGTTGTTCTGATGAAGCGAATTCAGCTGTTGGGGCTGCTGATGGGG
ATGTTGCTGCTGAGACTGTTGGTATTGCTGCTTGTACTGCGTGGCGAAGT
GCGGCTGGTTGGACTCAAAAGATTGGAAGTTTTGGTTATCACCGAATCTC
AAATTGGAATGATGCTTCTGCGGCTGTCCATTCATAGGATAACCAGAGGC
GTGGTTATTGCCACCGCCAGAGATCAAGGCATGGAGCAAGGCATTCGAGT
TGGCATCTGGTCGAGCCTGGCGTTGCTGGCCACGGTTTAGATATTGCTGC
TGTGCCTGATGCTTGGCACCGCCATTGATAAGCTTCGAGGTCTGCTCCTC
AATTTTTCGCTTCATTACGGCGTTTCGCATTATCACATTGGCATGCGCTT
GCAAGTCCTCCTGCGACAGTTGGTGCGGCGCCTGCGTCTGTGGATTATGC
TGCGGCTGCTGCCTGGCTGCAAGAGTCTGCTGGACAATGGCCAAGTTGTG
GAGATTCTGCAACTGGCTGGCGATGACCGTGCTTGAGAGCATGTCCAGCT
GCTGCTTGTGCTGCTGCTGCTGCTGCTGGGTGTTGGTGAACTGCAATACA
GCAGTGATGGCCTCGCGATCCATGTCCGTCAAGCGTGGGTTGGCCAACTG
CACCAGCAATCCGTGCTTG
BO11240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11181-PA | 3399 | cup-RA | 2646..3396 | 769..19 | 3755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:27:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34310-RD | 4306 | CG34310-RD | 3087..3837 | 769..19 | 3755 | 100 | Minus |
| CG34310-RC | 4002 | CG34310-RC | 2783..3533 | 769..19 | 3755 | 100 | Minus |
| cup-RC | 4306 | CG11181-RC | 3087..3837 | 769..19 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6669774..6670513 | 769..30 | 3700 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2712..2924 | 261..54 | 196 | 57.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6882 | 182..62 | 170 | 64 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6890 | 190..106 | 166 | 67.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6791 | 182..129 | 162 | 77.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2517 | 182..106 | 153 | 67.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6820 | 186..80 | 153 | 67 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6897 | 189..81 | 151 | 65.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6852 | 182..110 | 149 | 67.1 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1176 | 190..107 | 149 | 65.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2391 | 190..129 | 148 | 71 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1587 | 194..114 | 139 | 66.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1591 | 182..132 | 131 | 75 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..6891 | 182..125 | 128 | 69 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2385 | 182..106 | 127 | 67.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6826 | 178..54 | 125 | 62.2 | Minus |
BO11240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:48 Download gff for
BO11240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-PA | 2646..3399 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:48 Download gff for
BO11240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11181-PA | 2646..3399 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:35:06 Download gff for
BO11240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 2783..3536 | 15..769 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:20 Download gff for
BO11240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RC | 3087..3840 | 15..769 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:20 Download gff for
BO11240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6669774..6670522 | 19..769 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:35:06 Download gff for
BO11240.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6669774..6670522 | 19..769 | 99 | | Minus |
BO11240.5prime Sequence
833 bp (763 high quality bases) assembled on 2006-04-19
> BO11240.5prime
GAAGTTATCAGTCGACATGGACCCTATGAAAGAGGAGGCGATCGAATTGA
ATGGCCATGCTATGCAAATGGCCGAAGCTGAGCAAGAAAATGGCGCTGGC
GCCCTGAAAATTGCCACCAATGCGGGTGCAACCGATCGTCCAGCGCATCA
GCAGCTTCCGCTGCCAGTCGAAGATCAGCAGGATGAGGTGCTGACCCCCG
CTGAGAAGGGCAAGTTCGAGTACCCGCCCCCTCCACCGCCACCAACTCCA
GTCCAGGCTCCGCTAGCCACCAAGGCCACCGCTCTGAATGCCAGTCAAGA
GCATGACGACGACGAGGCCAACTCCGAGAAGTGGGAGGATCCGTGCGCTC
CGCCCCCGCCTCCTCCGCTGCCGACTAGCGCTTTCCTGGCCACCGGACTG
GGCTACCTCAAGCTGCCCGCCTTCAAGCTGAAGGACGCACTGGAGAAGGC
CATCACCAAGTTGGAGGCCAACAAGCGGACGCTAAAGGCCAGCCCTGAGT
CTTCTCGTTCCATCAAAAACAAGAATGTGGTGGCCCTGGAGATGTTACCC
AGGCGCTCAAACCCAGAAACGATCGGCGATGGATCCATGTTGGCATCCAC
ATCCACGGCTGTTATGCTGCAGACCAAAAAGCCCGCCGTTATTGTGGAGA
TGGAGAGGCGTTGTAAGATCATCAATTTACTGGCCAAACAGAATCAAATC
CTCGAATCCATTTCGGGGGAGGCCATTCCGATGCATGGACCCTCGAAGCA
TCTGCACGAGGACGAGGGTCTGACCCTGCAAGTTCTCTCGGCCCGAGCAT
CCACACCGTACACACAGCCCTCCAGCATGTTGT
BO11240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11181-PA | 3399 | cup-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34310-RD | 4306 | CG34310-RD | 442..1258 | 17..833 | 4085 | 100 | Plus |
| CG34310-RC | 4002 | CG34310-RC | 138..954 | 17..833 | 4085 | 100 | Plus |
| cup-RC | 4306 | CG11181-RC | 442..1258 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6664105..6664587 | 17..499 | 2415 | 100 | Plus |
| 2L | 23513712 | 2L | 6664929..6665264 | 498..833 | 1680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:57:48 has no hits.
BO11240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:49 Download gff for
BO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:49 Download gff for
BO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11181-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:03:51 Download gff for
BO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 128..954 | 7..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:11:43 Download gff for
BO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RC | 432..1258 | 7..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:11:43 Download gff for
BO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6664095..6664587 | 7..499 | 99 | -> | Plus |
| 2L | 6664931..6665264 | 500..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:03:51 Download gff for
BO11240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6664095..6664587 | 7..499 | 99 | -> | Plus |
| arm_2L | 6664931..6665264 | 500..833 | 100 | | Plus |
BO11240.complete Sequence
3430 bp assembled on 2008-01-16
GenBank Submission: FJ632037
> BO11240.complete
GAAGTTATCAGTCGACATGGACCCTATGAAAGAGGAGGCGATCGAATTGA
ATGGCCATGCTATGCAAATGGCCGAAGCTGAGCAAGAAAATGGCGCTGGC
GCCCTGAAAATTGCCACCAATGCGGGTGCAACCGATCGTCCAGCGCATCA
GCAGCTTCCGCTGCCAGTCGAAGATCAGCAGGATGAGGTGCTGACCCCCG
CTGAGAAGGGCAAGTTCGAGTACCCGCCCCCTCCACCGCCACCAACTCCA
GTCCAGGCTCCGCTAGCCACCAAGGCCACCGCTCTGAATGCCAGTCAAGA
GCATGACGACGACGAGGCCAACTCCGAGAAGTGGGAGGATCCGTGCGCTC
CGCCCCCGCCTCCTCCGCTGCCGACTAGCGCTTTCCTGGCCACCGGACTG
GGCTACCTCAAGCTGCCCGCCTTCAAGCTGAAGGACGCACTGGAGAAGGC
CATCACCAAGTTGGAGGCCAACAAGCGGACGCTAAAGGCCAGCCCTGAGT
CTTCTCGTTCCATCAAAAACAAGAATGTGGTGGCCCTGGAGATGTTACCC
AGGCGCTCAAACCCAGAAACGATCGGCGATGGATCCATGTTGGCATCCAC
ATCCACGGCTGTTATGCTGCAGACCAAAAAGCCCGCCGTTATTGTGGAGA
TGGAGAGGCGTTGTAAGATCATCAATTTACTGGCCAAACAGAATCAAATC
CTCGAATCCATTTCGGGGGAGGCCATTCCGATGCATGGACCCTCGAAGCA
TCTGCACGAGGACGAGGGTCTGACCCTGCAAGTTCTCTCGGCCCGAGCAT
CCACACCGTACACACAGCCCTCCAGCATGTTGTCCTGCACGGCCGTTAGT
TGTGACCTGGAGCACGATTCGCCGCGGAAGCAAGTGGCCAGCAAGGAGGC
CGTGCCGGAGCAGCAGTCTAGTCAGGTGCAGCAAAAGCGTCCACCCAGCA
CAGGCATTCACAAGCCAGGAAGTCTGCGAGCACCCAAGGCTGTTCGTCCT
ACTACTGCTCCGGTGGTCAGCAGCAAGCCGGTCAAGAGCTATACCCGCTC
CCGCCTGATGGACATTCGCAACGGGATGTTCAATGCCCTGATGCACAGGT
CCAAGGAGAGCTTTGTGATGCCTCGCATCGCCACCTGCGACGACATTGAG
TTGGAGGGAAGGCTTCGCCGCATGAATATTTGGCGCACCTCGGACGGCAC
AAGATTCCGGACCCGCTCCACCACAGCTAACTTAAACATGAACAACAACA
ACAACAATGAGTGCATGCCTGCCTTCTTCAAAAACAAAAATAAGCCGAAC
CTAATCAGTGACGAGTCCATCATCCAGAGCCAACCGCCCCAGCCGCAAAC
GGAGTTCCAAGATCCGGCCATTGTTAACCAAAGACGCATTGGCAGCGGTC
GCTTAAACCATTCCAAGTGGGGTTACAACGACGAAGACTACCACTCGTAC
CACAATGGCAAGTCGCAGCATATGGAGGAGGTCAACTCGAAGAACAGCAA
AAACATGACGGTGCTGCAGTTCTTCGACAACGGCGAGATCAGCAGTCAGC
CTCAAAGACGGCCGAACACTCCTGTGATGGGGATGTCTATCAATCGATCC
GAGAACGACACCCTGCACTCGAACGAGTCCAGTGAAGATTTGAGTCGCGC
CAACGAGAACTATGTAAAGCGCGTAATGTCTGGATTCCTGGTTGTATCGA
AGCCCAAGTCACGAGATGTCGAGGATAGACATCACCGGCGGTACAGGAAC
CAGAACGAGGAGCCTGAGTGGTTTAGCTGTGGACCCACGTCTAGACTGGA
CACTATAGAGTTGTGTGGGTTCGATGAGGACGAGGAGAAAATGCTAAAGG
AGGGCAACAAAAACCACGGATTAGGCGAAACAGAGCGAGAAACGTCAAAA
CAAAAGATGGACCATAAGTACAAATGGACGCATGCGGAGCCGATGGGTCG
AAGCAAATACATGCCCAAACACGACACTAACAATAATCATAACGTGGAGA
ACATGAATAATGTTATGGCTACCGAGCATCAGCAACAAAAGGAAGAGAAA
CGCCCAGGCAGTGGCCGTTCGTTTCAGTTTGATAAGTTCAATCAAAGCCA
ACAGAATTACGAGAGTAGCAGTTATGTTAATCACCAACAGCCGCCGCAAA
CGCAGCCTCAGCAAATGCAGCAGCAGTCGAACACAAACACGAACAACTCT
AAATTCATGTCATTCTTTGCCAATGAGGGGAACTCCTCGTCTTCTTCGCT
GAACGAGTTTTTCAAGCAGGCCATTAACCAGGGTCATGGCAACAATCCGG
AGCAGCCCAAATCGTTGGGCCACATCGGACAGATGCCTTCGGTGGATCAG
CTGGAGGCCAAATGGCGTCGAAACTCACTGAACAATGTTGGCGAGACTGC
CAACAAGCAGACTGATAACTTCCAGAAGCTAATTGGGTCTCTTTCTTCGG
CTAAGCCACAGTCACAGGCGGTTGGCTATGATGCCATCTCCAACTTTATA
ATGCAGCAACAGCAGTACCAGCAGCAGCAACAGAAGCAGCACCTCATCAT
ACAGCAGCAGCAGCAACATACCGCCTTTTTGGCGAGCCTGCAGCTGAAGG
CGATCCTCGGCCGGGCCGACACCCAATTGCTACTGCTCCGTCTGACTAAA
GGGGAAATATCCAAGCACGGATTGCTGGTGCAGTTGGCCAACCCACGCTT
GACGGACATGGATCGCGAGGCCATCACTGCTGTATTGCAGTTCACCAACA
CCCAGCAGCAGCAGCAGCAGCACAAGCAGCAGCTGGACATGCTCTCAAGC
ACGGTCATCGCCAGCCAGTTGCAGAATCTCCACAACTTGGCCATTGTCCA
GCAGACTCTTGCAGCCAGGCAGCAGCCGCAGCATAATCCACAGACGCAGG
CGCCGCACCAACTGTCGCAGGAGGACTTGCAAGCGCATGCCAATGTGATA
ATGCGAAACGCCGTAATGAAGCGAAAAATTGAGGAGCAGACCTCGAAGCT
TATCAATGGCGGTGCCAAGCATCAGGCACAGCAGCAATATCTAAACCGTG
GCCAGCAACGCCAGGCTCGACCAGATGCCAACTCGAATGCCTTGCTCCAT
GCCTTGATCTCTGGCGGTGGCAATAACCACGCCTCTGGTTATCCTATGAA
TGGACAGCCGCAGAAGCATCATTCCAATTTGAGATTCGGTGATAACCAAA
ACTTCCAATCTTTTGAGTCCAACCAGCCGCACTTCGCCACGCAGTACAAG
CAGCAATACCAACAGTCTCAGCAGCAACATCCCCATCAGCAGCCCCAACA
GCTGAATTCGCTTCATCAGAACAACGCTGGAGCTGTCAATAGCTTCAATA
AGGCCCAAATGCAAGCTCAATCAGCTATTTCCATGCTGCCCAACAGCGGG
GATGAGTTTCATGCAAGCTTTCTAGACCAT
BO11240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cup-RC | 3354 | CG11181-PC | 1..3351 | 62..3412 | 16755 | 100 | Plus |
| cup-RB | 3354 | CG11181-PB | 1..3351 | 62..3412 | 16755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34310-RD | 4306 | CG34310-RD | 442..3837 | 17..3412 | 16980 | 100 | Plus |
| CG34310-RC | 4002 | CG34310-RC | 138..3533 | 17..3412 | 16980 | 100 | Plus |
| cup-RC | 4306 | CG11181-RC | 442..3837 | 17..3412 | 16980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6664929..6665792 | 498..1361 | 4320 | 100 | Plus |
| 2L | 23513712 | 2L | 6669762..6670513 | 2650..3401 | 3760 | 100 | Plus |
| 2L | 23513712 | 2L | 6668944..6669691 | 1905..2652 | 3740 | 100 | Plus |
| 2L | 23513712 | 2L | 6668342..6668887 | 1361..1906 | 2730 | 100 | Plus |
| 2L | 23513712 | 2L | 6664105..6664587 | 17..499 | 2415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2712..2924 | 3170..3377 | 196 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6882 | 3249..3369 | 170 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6890 | 3241..3325 | 166 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6738..6791 | 3249..3302 | 162 | 77.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2517 | 3249..3325 | 153 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6820 | 3245..3351 | 153 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6897 | 3242..3350 | 151 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6852 | 3249..3321 | 149 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1176 | 3241..3324 | 149 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2391 | 3241..3302 | 148 | 71 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1587 | 3237..3317 | 139 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1591 | 3249..3299 | 131 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..6891 | 3249..3306 | 128 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2385 | 3249..3325 | 127 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6826 | 3253..3377 | 125 | 62.2 | Plus |
BO11240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:53 Download gff for
BO11240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 1..3354 | 62..3416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:47 Download gff for
BO11240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 141..3536 | 17..3414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:04 Download gff for
BO11240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 138..3533 | 17..3414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:53 Download gff for
BO11240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RB | 131..3539 | 7..3416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:53 Download gff for
BO11240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cup-RC | 442..3837 | 17..3414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:53 Download gff for
BO11240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6664105..6664587 | 17..499 | 100 | -> | Plus |
| 2L | 6664931..6665791 | 500..1360 | 100 | -> | Plus |
| 2L | 6668342..6668887 | 1361..1906 | 100 | -> | Plus |
| 2L | 6668946..6669690 | 1907..2651 | 100 | -> | Plus |
| 2L | 6669764..6670522 | 2652..3412 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:04 Download gff for
BO11240.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6664105..6664587 | 17..499 | 100 | -> | Plus |
| arm_2L | 6664931..6665791 | 500..1360 | 100 | -> | Plus |
| arm_2L | 6668342..6668887 | 1361..1906 | 100 | -> | Plus |
| arm_2L | 6668946..6669690 | 1907..2651 | 100 | -> | Plus |
| arm_2L | 6669764..6670522 | 2652..3412 | 99 | | Plus |
BO11240.pep Sequence
Translation from 16 to 3430
> BO11240.pep
MDPMKEEAIELNGHAMQMAEAEQENGAGALKIATNAGATDRPAHQQLPLP
VEDQQDEVLTPAEKGKFEYPPPPPPPTPVQAPLATKATALNASQEHDDDE
ANSEKWEDPCAPPPPPPLPTSAFLATGLGYLKLPAFKLKDALEKAITKLE
ANKRTLKASPESSRSIKNKNVVALEMLPRRSNPETIGDGSMLASTSTAVM
LQTKKPAVIVEMERRCKIINLLAKQNQILESISGEAIPMHGPSKHLHEDE
GLTLQVLSARASTPYTQPSSMLSCTAVSCDLEHDSPRKQVASKEAVPEQQ
SSQVQQKRPPSTGIHKPGSLRAPKAVRPTTAPVVSSKPVKSYTRSRLMDI
RNGMFNALMHRSKESFVMPRIATCDDIELEGRLRRMNIWRTSDGTRFRTR
STTANLNMNNNNNNECMPAFFKNKNKPNLISDESIIQSQPPQPQTEFQDP
AIVNQRRIGSGRLNHSKWGYNDEDYHSYHNGKSQHMEEVNSKNSKNMTVL
QFFDNGEISSQPQRRPNTPVMGMSINRSENDTLHSNESSEDLSRANENYV
KRVMSGFLVVSKPKSRDVEDRHHRRYRNQNEEPEWFSCGPTSRLDTIELC
GFDEDEEKMLKEGNKNHGLGETERETSKQKMDHKYKWTHAEPMGRSKYMP
KHDTNNNHNVENMNNVMATEHQQQKEEKRPGSGRSFQFDKFNQSQQNYES
SSYVNHQQPPQTQPQQMQQQSNTNTNNSKFMSFFANEGNSSSSSLNEFFK
QAINQGHGNNPEQPKSLGHIGQMPSVDQLEAKWRRNSLNNVGETANKQTD
NFQKLIGSLSSAKPQSQAVGYDAISNFIMQQQQYQQQQQKQHLIIQQQQQ
HTAFLASLQLKAILGRADTQLLLLRLTKGEISKHGLLVQLANPRLTDMDR
EAITAVLQFTNTQQQQQQHKQQLDMLSSTVIASQLQNLHNLAIVQQTLAA
RQQPQHNPQTQAPHQLSQEDLQAHANVIMRNAVMKRKIEEQTSKLINGGA
KHQAQQQYLNRGQQRQARPDANSNALLHALISGGGNNHASGYPMNGQPQK
HHSNLRFGDNQNFQSFESNQPHFATQYKQQYQQSQQQHPHQQPQQLNSLH
QNNAGAVNSFNKAQMQAQSAISMLPNSGDEFHASFLDH
BO11240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cup-PC | 1117 | CG11181-PC | 1..1117 | 16..1132 | 5841 | 100 | Plus |
| cup-PB | 1117 | CG11181-PB | 1..1117 | 16..1132 | 5841 | 100 | Plus |
| 4E-T-PH | 979 | CG32016-PH | 195..877 | 439..1094 | 204 | 20.7 | Plus |
| 4E-T-PG | 1010 | CG32016-PG | 195..908 | 439..1094 | 185 | 20.9 | Plus |
| 4E-T-PC | 1010 | CG32016-PC | 195..908 | 439..1094 | 185 | 20.9 | Plus |
