Clone BO11242 Report

Search the DGRC for BO11242

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG3655-RA
Protein status:BO11242.pep: Imported from assembly
Sequenced Size:1723

Clone Sequence Records

BO11242.3prime Sequence

788 bp (737 high quality bases) assembled on 2006-04-19

> BO11242.3prime
ATGGTCTAGAAAGCTTGCCCGCTCCGTGGAGTGGGTGGTGCCCAATCCGC
TGCTGCTGCTCCCAGAACCGGAAGCGGAATTCAATCCTTGGCGGCGGAAG
AAGCCGAGGGTGTCCAGCGCCTTAATAGTGCGTCGGATTAGCTCGTCCTT
GTATTTCCAAATGGTTTTGTCCTCGACTGAATGCTCCCGATACTCCTCAC
AGCTCTTCTTCAGCGTCTTGACGCAGTCCGCCCGATAGTGCTGCAGCTGG
GCGTCCTTGGTGTCCACAGGATACGACTTGCAGACGCCGCCCAAGCAGCT
CAGTGGAAAGTGATTGTGGAGGGTGAGCACGCGCTCCGGATCGTGGAAGC
ATTTCACATACTGATTCGGCTTGGTGTAGTTCTTCGCACGATGGACGTGC
TGCAGCATGTGCATGTACTTGGGTATGTCCTTGTGCCAGCCGTGTTCGTG
CTGCTGGTCGTCCAAGAAGTACACGTTGCGGAAGTTGTAGCTGTGGAATC
CGTCCGGCTTGATCTTGCGCGACTCTGGACGCACTTTGTCCATCAACTCG
GACCATAAAACCGCTCCGCCTTTGGGCATGATCACCTCGTCAATGTCCAG
CAGTGCAATGTAGTCGTACAGATAGAGATTTTTGTACAGACAGTCGTTGT
ACGGAATAACCTCGTTCTGGCGCTTGTGGTTCGTCTTCTTAGTTAGGTAA
AGGTGCTGGAATCCCGGCACGTTTGGCTGCCCACCGGGCAATGTCAGCGG
GATCACTTGGACCTTGCCCTCCTGTTCGTAGTGATTAA

BO11242.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-PA 1692 CG3655-RA 922..1689 786..19 3815 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-RD 4325 CG3655-RD 1958..2725 786..19 3825 99.9 Minus
CG3655-RC 4766 CG3655-RC 2399..3166 786..19 3825 99.9 Minus
CG3655-RB 4995 CG3655-RB 1763..2530 786..19 3825 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1075506..1076273 19..786 3825 99.9 Plus
Blast to na_te.dros performed on 2015-02-03 17:14:50 has no hits.

BO11242.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:50 Download gff for BO11242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-PA 922..1692 16..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:50 Download gff for BO11242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-PA 922..1692 16..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:33:35 Download gff for BO11242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 1761..2530 19..788 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:00:32 Download gff for BO11242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 1761..2530 19..788 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:00:32 Download gff for BO11242.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1075506..1076275 19..788 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:33:35 Download gff for BO11242.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 969539..970308 19..788 99   Plus

BO11242.5prime Sequence

881 bp (764 high quality bases) assembled on 2006-04-19

> BO11242.5prime
GAAGTTATCAGTCGACATGGCTCACTCCAAGGTGATCCTTAAGATCCTGT
TTTCGCTGTGCGTCTGGTCCTTCGTCATCATAGGACTGTTCAAGATGCAC
GGTACTAATCTGGTGCCCCAGGAGTACCAGCAGGTGCCACTCAACGGACG
CATCCTGCTGCAGAAAGACATTCGCTATGCGGAAACCACCTCCACGACCA
CGGATCACTTCGATCCCAGCGAGATACTGGTGGACAATCGAACAGCCATG
GACGACGACCAGTTGGTCCGAGACGTGGAGTCCCGCATCCCCTCTCTGCC
GATCGCCTACTGGAGCAAGAATAAGAACTTCCTGCAGCAGAAGTCGTCGA
CCTGCGCGAAGTACCCCTCCATTTTCGAGCTGGAATTCAACAACATCTAC
TGGCAGACGCTGCGCACGTCGAACGGAACGTTCCAGCTTTTTGGGGCTTA
TTACGACATCCGCCGCACCTCGTTGCTGGGACCCACTGTGCGGATCCTTG
GAATGATCGACAGGATTGAGCCCAAGGTGAAGACCTACTGCCAGTTCTGG
TTTGACGGCCAAAAGGAGCCGTTCATCGTGAAAACGTTTGAGTACAAGTA
CATCTGGTACAACAAGTGGGGCAACTACAAGCAGGGCATCTACCAGCCAT
ATCTGATCGCATGCCAGATTCCCAAGCCCTTTCACGGCGTGGTGCCCAGC
TCCGTGTCGATGGTGGAGAAGGAGTGTGATACGGCCACGAACAATCTGCG
GGTCATCTACAACCGACCGCCCGACGACCAAAAGAAGGGATTTGCTGTCT
GCGTCAAGGGATTGGACTTCCTCTACGACGACCTGAGTGTGCGGCTGATT
GAGTGGATCGAAATGCTCAATATCCTTGGGG

BO11242.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-PA 1692 CG3655-RA 1..865 17..881 4300 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-RD 4325 CG3655-RD 1029..1901 9..881 4320 99.7 Plus
CG3655-RC 4766 CG3655-RC 1470..2342 9..881 4320 99.7 Plus
CG3655-RB 4995 CG3655-RB 834..1706 9..881 4320 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1076462..1077100 881..243 3180 99.8 Minus
X 23542271 X 1077210..1077446 245..9 1155 99.2 Minus
Blast to na_te.dros performed on 2015-02-11 18:41:04 has no hits.

BO11242.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:51 Download gff for BO11242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:52 Download gff for BO11242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:38:05 Download gff for BO11242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 829..1706 3..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:29:47 Download gff for BO11242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 829..1706 3..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:29:47 Download gff for BO11242.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1077210..1077451 3..245 98   Minus
X 1076462..1077097 246..881 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:38:05 Download gff for BO11242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 970495..971130 246..881 99 <- Minus
arm_X 971243..971484 3..245 98   Minus

BO11242.complete Sequence

1723 bp assembled on 2009-08-24

GenBank Submission: KX798251

> BO11242.complete
GAAGTTATCAGTCGACATGGCTCACTCCAAGGTGATCCTTAAGATCCTGT
TTTCGCTGTGCGTCTGGTCCTTCGTCATCATAGGACTGTTCAAGATGCAC
GGTACTAATCTGGTGCCCCAGGAGTACCAGCAGGTGCCACTCAACGGACG
CATCCTGCTGCAGAAAGACATTCGCTATGCGGAAACCACCTCCACGACCA
CGGATCACTTCGATCCCAGCGAGATACTGGTGGACAATCGAACAGCCATG
GACGACGACCAGTTGGTCCGAGACGTGGAGTCCCGCATCCCCTCTCTGCC
GATCGCCTACTGGAGCAAGAATAAGAACTTCCTGCAGCAGAAGTCGTCGA
CCTGCGCGAAGTACCCCTCCATTTTCGAGCTGGAATTCAACAACATCTAC
TGGCAGACGCTGCGCACGTCGAACGGAACGTTCCAGCTTTTTGGGGCTTA
TTACGACATCCGCCGCACCTCGTTGCTGGGACCCACTGTGCGGATCCTTG
GAATGATCGACAGGATTGAGCCCAAGGTGAAGACCTACTGCCAGTTCTGG
TTTGACGGCCAAAAGGAGCCGTTCATCGTGAAAACGTTTGAGTACAAGTA
CATCTGGTACAACAAGTGGGGCAACTACAAGCAGGGCATCTACCAGCCAT
ATCTGATCGCATGCCAGATTCCCAAGCCCTTTCACGGCGTGGTGCCCAGC
TCCGTGTCGATGGTGGAGAAGGAGTGTGATACGGCCACGAACAATCTGCG
GGTCATCTACAACCGACCGCCCGACGACCAGAAGAAGGGATTTGCTGTCT
GCGTCAAGGGATTGGACTTCCTCTACGACGACCTGAGTGTGCGGCTGATT
GAGTGGATCGAAATGCTCAATATCCTTGGGGCGGACAAAATCTACTTCTA
CAATCTTCAGGTCCATCCCAACATCACCAAAGTGCTTAATCACTACGAAC
AGGAGGGCAAGGTCCAAGTGATCCCGCTGACATTGCCCGGTGGGCAGCCA
AACGTGCCGGGATTCCAGCACCTTTACCTAACTAAGAAGACGAACCACAA
GCGCCAGAACGAGGTTATTCCGTACAACGACTGTCTGTACAAAAATCTCT
ATCTGTACGACTACATTGCACTGCTGGACATTGACGAGGTGATCATGCCC
AAAGGCGGAGCGGTTTTATGGTCCGAGTTGATGGACAAAGTGCGTCCAGA
GTCGCGCAAGATCAAGCCGGACGGATTCCACAGCTACAACTTCCGCAACG
TGTACTTCTTGGACGACCAGCAGCACGAACACGGCTGGCACAAGGACATA
CCCAAGTACATGCACATGCTGCAGCACGTCCATCGTGCGAAGAACTACAC
CAAGCCGAATCAGTATGTGAAATGCTTCCACGATCCGGAGCGCGTGCTCA
CCCTCCACAATCACTTTCCACTGAGCTGCTTGGGCGGCGTCTGCAAGTCG
TATCCTGTGGACACCAAGGACGCCCAGCTGCAGCACTATCGGGCGGACTG
CGTCAAGACGCTGAAGAAGAGCTGTGAGGAGTATCGGGAGCATTCAGTCG
AGGACAAAACCATTTGGAAATACAAGGACGAGCTAATCCGACGCACTATT
AAGGCGCTGGACACCCTCGGCTTCTTCCGCCGCCAAGGATTGAATTCCGC
TTCCGGTTCTGGGAGCAGCAGCAGCGGATTGGGCACCACCCACTCCACGG
AGCGGGCAAGCTTTCTAGACCAT

BO11242.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-RD 1692 CG3655-PD 1..1689 17..1705 8415 99.9 Plus
CG3655-RC 1791 CG3655-PC 1..1689 17..1705 8415 99.9 Plus
CG3655-RB 1692 CG3655-PB 1..1689 17..1705 8415 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-RD 4325 CG3655-RD 1029..2725 9..1705 8425 99.8 Plus
CG3655-RC 4766 CG3655-RC 1470..3166 9..1705 8425 99.8 Plus
CG3655-RB 4995 CG3655-RB 834..2530 9..1705 8425 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1075506..1076303 1705..908 3960 99.7 Minus
X 23542271 X 1076431..1077100 912..243 3350 100 Minus
X 23542271 X 1077210..1077446 245..9 1155 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 01:33:44 has no hits.

BO11242.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:08 Download gff for BO11242.complete
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 655..2343 17..1707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:08 Download gff for BO11242.complete
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 842..2530 17..1707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:28 Download gff for BO11242.complete
Subject Subject Range Query Range Percent Splice Strand
CG3655-RB 842..2530 17..1707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:28 Download gff for BO11242.complete
Subject Subject Range Query Range Percent Splice Strand
X 1075503..1076300 911..1707 99 <- Minus
X 1076433..1077097 246..910 100 <- Minus
X 1077210..1077438 17..245 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:08 Download gff for BO11242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 969536..970333 911..1707 99 <- Minus
arm_X 970466..971130 246..910 100 <- Minus
arm_X 971243..971471 17..245 100   Minus

BO11242.pep Sequence

Translation from 16 to 1723

> BO11242.pep
MAHSKVILKILFSLCVWSFVIIGLFKMHGTNLVPQEYQQVPLNGRILLQK
DIRYAETTSTTTDHFDPSEILVDNRTAMDDDQLVRDVESRIPSLPIAYWS
KNKNFLQQKSSTCAKYPSIFELEFNNIYWQTLRTSNGTFQLFGAYYDIRR
TSLLGPTVRILGMIDRIEPKVKTYCQFWFDGQKEPFIVKTFEYKYIWYNK
WGNYKQGIYQPYLIACQIPKPFHGVVPSSVSMVEKECDTATNNLRVIYNR
PPDDQKKGFAVCVKGLDFLYDDLSVRLIEWIEMLNILGADKIYFYNLQVH
PNITKVLNHYEQEGKVQVIPLTLPGGQPNVPGFQHLYLTKKTNHKRQNEV
IPYNDCLYKNLYLYDYIALLDIDEVIMPKGGAVLWSELMDKVRPESRKIK
PDGFHSYNFRNVYFLDDQQHEHGWHKDIPKYMHMLQHVHRAKNYTKPNQY
VKCFHDPERVLTLHNHFPLSCLGGVCKSYPVDTKDAQLQHYRADCVKTLK
KSCEEYREHSVEDKTIWKYKDELIRRTIKALDTLGFFRRQGLNSASGSGS
SSSGLGTTHSTERASFLDH

BO11242.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3655-PD 563 CG3655-PD 1..563 1..563 3056 100 Plus
CG3655-PC 596 CG3655-PC 1..563 1..563 3056 100 Plus
CG3655-PB 563 CG3655-PB 1..563 1..563 3056 100 Plus
CG3655-PA 563 CG3655-PA 1..563 1..563 3056 100 Plus
CG11384-PA 588 CG11384-PA 68..533 81..523 820 37.6 Plus