Clone Sequence Records
BO11242.3prime Sequence
788 bp (737 high quality bases) assembled on 2006-04-19
> BO11242.3prime
ATGGTCTAGAAAGCTTGCCCGCTCCGTGGAGTGGGTGGTGCCCAATCCGC
TGCTGCTGCTCCCAGAACCGGAAGCGGAATTCAATCCTTGGCGGCGGAAG
AAGCCGAGGGTGTCCAGCGCCTTAATAGTGCGTCGGATTAGCTCGTCCTT
GTATTTCCAAATGGTTTTGTCCTCGACTGAATGCTCCCGATACTCCTCAC
AGCTCTTCTTCAGCGTCTTGACGCAGTCCGCCCGATAGTGCTGCAGCTGG
GCGTCCTTGGTGTCCACAGGATACGACTTGCAGACGCCGCCCAAGCAGCT
CAGTGGAAAGTGATTGTGGAGGGTGAGCACGCGCTCCGGATCGTGGAAGC
ATTTCACATACTGATTCGGCTTGGTGTAGTTCTTCGCACGATGGACGTGC
TGCAGCATGTGCATGTACTTGGGTATGTCCTTGTGCCAGCCGTGTTCGTG
CTGCTGGTCGTCCAAGAAGTACACGTTGCGGAAGTTGTAGCTGTGGAATC
CGTCCGGCTTGATCTTGCGCGACTCTGGACGCACTTTGTCCATCAACTCG
GACCATAAAACCGCTCCGCCTTTGGGCATGATCACCTCGTCAATGTCCAG
CAGTGCAATGTAGTCGTACAGATAGAGATTTTTGTACAGACAGTCGTTGT
ACGGAATAACCTCGTTCTGGCGCTTGTGGTTCGTCTTCTTAGTTAGGTAA
AGGTGCTGGAATCCCGGCACGTTTGGCTGCCCACCGGGCAATGTCAGCGG
GATCACTTGGACCTTGCCCTCCTGTTCGTAGTGATTAA
BO11242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3655-PA | 1692 | CG3655-RA | 922..1689 | 786..19 | 3815 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3655-RD | 4325 | CG3655-RD | 1958..2725 | 786..19 | 3825 | 99.9 | Minus |
CG3655-RC | 4766 | CG3655-RC | 2399..3166 | 786..19 | 3825 | 99.9 | Minus |
CG3655-RB | 4995 | CG3655-RB | 1763..2530 | 786..19 | 3825 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1075506..1076273 | 19..786 | 3825 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:14:50 has no hits.
BO11242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:50 Download gff for
BO11242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-PA | 922..1692 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:50 Download gff for
BO11242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-PA | 922..1692 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:33:35 Download gff for
BO11242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-RB | 1761..2530 | 19..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:00:32 Download gff for
BO11242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-RB | 1761..2530 | 19..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:00:32 Download gff for
BO11242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1075506..1076275 | 19..788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:33:35 Download gff for
BO11242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 969539..970308 | 19..788 | 99 | | Plus |
BO11242.5prime Sequence
881 bp (764 high quality bases) assembled on 2006-04-19
> BO11242.5prime
GAAGTTATCAGTCGACATGGCTCACTCCAAGGTGATCCTTAAGATCCTGT
TTTCGCTGTGCGTCTGGTCCTTCGTCATCATAGGACTGTTCAAGATGCAC
GGTACTAATCTGGTGCCCCAGGAGTACCAGCAGGTGCCACTCAACGGACG
CATCCTGCTGCAGAAAGACATTCGCTATGCGGAAACCACCTCCACGACCA
CGGATCACTTCGATCCCAGCGAGATACTGGTGGACAATCGAACAGCCATG
GACGACGACCAGTTGGTCCGAGACGTGGAGTCCCGCATCCCCTCTCTGCC
GATCGCCTACTGGAGCAAGAATAAGAACTTCCTGCAGCAGAAGTCGTCGA
CCTGCGCGAAGTACCCCTCCATTTTCGAGCTGGAATTCAACAACATCTAC
TGGCAGACGCTGCGCACGTCGAACGGAACGTTCCAGCTTTTTGGGGCTTA
TTACGACATCCGCCGCACCTCGTTGCTGGGACCCACTGTGCGGATCCTTG
GAATGATCGACAGGATTGAGCCCAAGGTGAAGACCTACTGCCAGTTCTGG
TTTGACGGCCAAAAGGAGCCGTTCATCGTGAAAACGTTTGAGTACAAGTA
CATCTGGTACAACAAGTGGGGCAACTACAAGCAGGGCATCTACCAGCCAT
ATCTGATCGCATGCCAGATTCCCAAGCCCTTTCACGGCGTGGTGCCCAGC
TCCGTGTCGATGGTGGAGAAGGAGTGTGATACGGCCACGAACAATCTGCG
GGTCATCTACAACCGACCGCCCGACGACCAAAAGAAGGGATTTGCTGTCT
GCGTCAAGGGATTGGACTTCCTCTACGACGACCTGAGTGTGCGGCTGATT
GAGTGGATCGAAATGCTCAATATCCTTGGGG
BO11242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3655-PA | 1692 | CG3655-RA | 1..865 | 17..881 | 4300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3655-RD | 4325 | CG3655-RD | 1029..1901 | 9..881 | 4320 | 99.7 | Plus |
CG3655-RC | 4766 | CG3655-RC | 1470..2342 | 9..881 | 4320 | 99.7 | Plus |
CG3655-RB | 4995 | CG3655-RB | 834..1706 | 9..881 | 4320 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1076462..1077100 | 881..243 | 3180 | 99.8 | Minus |
X | 23542271 | X | 1077210..1077446 | 245..9 | 1155 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:41:04 has no hits.
BO11242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:51 Download gff for
BO11242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:52 Download gff for
BO11242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:38:05 Download gff for
BO11242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-RB | 829..1706 | 3..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:29:47 Download gff for
BO11242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-RB | 829..1706 | 3..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:29:47 Download gff for
BO11242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1077210..1077451 | 3..245 | 98 | | Minus |
X | 1076462..1077097 | 246..881 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:38:05 Download gff for
BO11242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 970495..971130 | 246..881 | 99 | <- | Minus |
arm_X | 971243..971484 | 3..245 | 98 | | Minus |
BO11242.complete Sequence
1723 bp assembled on 2009-08-24
GenBank Submission: KX798251
> BO11242.complete
GAAGTTATCAGTCGACATGGCTCACTCCAAGGTGATCCTTAAGATCCTGT
TTTCGCTGTGCGTCTGGTCCTTCGTCATCATAGGACTGTTCAAGATGCAC
GGTACTAATCTGGTGCCCCAGGAGTACCAGCAGGTGCCACTCAACGGACG
CATCCTGCTGCAGAAAGACATTCGCTATGCGGAAACCACCTCCACGACCA
CGGATCACTTCGATCCCAGCGAGATACTGGTGGACAATCGAACAGCCATG
GACGACGACCAGTTGGTCCGAGACGTGGAGTCCCGCATCCCCTCTCTGCC
GATCGCCTACTGGAGCAAGAATAAGAACTTCCTGCAGCAGAAGTCGTCGA
CCTGCGCGAAGTACCCCTCCATTTTCGAGCTGGAATTCAACAACATCTAC
TGGCAGACGCTGCGCACGTCGAACGGAACGTTCCAGCTTTTTGGGGCTTA
TTACGACATCCGCCGCACCTCGTTGCTGGGACCCACTGTGCGGATCCTTG
GAATGATCGACAGGATTGAGCCCAAGGTGAAGACCTACTGCCAGTTCTGG
TTTGACGGCCAAAAGGAGCCGTTCATCGTGAAAACGTTTGAGTACAAGTA
CATCTGGTACAACAAGTGGGGCAACTACAAGCAGGGCATCTACCAGCCAT
ATCTGATCGCATGCCAGATTCCCAAGCCCTTTCACGGCGTGGTGCCCAGC
TCCGTGTCGATGGTGGAGAAGGAGTGTGATACGGCCACGAACAATCTGCG
GGTCATCTACAACCGACCGCCCGACGACCAGAAGAAGGGATTTGCTGTCT
GCGTCAAGGGATTGGACTTCCTCTACGACGACCTGAGTGTGCGGCTGATT
GAGTGGATCGAAATGCTCAATATCCTTGGGGCGGACAAAATCTACTTCTA
CAATCTTCAGGTCCATCCCAACATCACCAAAGTGCTTAATCACTACGAAC
AGGAGGGCAAGGTCCAAGTGATCCCGCTGACATTGCCCGGTGGGCAGCCA
AACGTGCCGGGATTCCAGCACCTTTACCTAACTAAGAAGACGAACCACAA
GCGCCAGAACGAGGTTATTCCGTACAACGACTGTCTGTACAAAAATCTCT
ATCTGTACGACTACATTGCACTGCTGGACATTGACGAGGTGATCATGCCC
AAAGGCGGAGCGGTTTTATGGTCCGAGTTGATGGACAAAGTGCGTCCAGA
GTCGCGCAAGATCAAGCCGGACGGATTCCACAGCTACAACTTCCGCAACG
TGTACTTCTTGGACGACCAGCAGCACGAACACGGCTGGCACAAGGACATA
CCCAAGTACATGCACATGCTGCAGCACGTCCATCGTGCGAAGAACTACAC
CAAGCCGAATCAGTATGTGAAATGCTTCCACGATCCGGAGCGCGTGCTCA
CCCTCCACAATCACTTTCCACTGAGCTGCTTGGGCGGCGTCTGCAAGTCG
TATCCTGTGGACACCAAGGACGCCCAGCTGCAGCACTATCGGGCGGACTG
CGTCAAGACGCTGAAGAAGAGCTGTGAGGAGTATCGGGAGCATTCAGTCG
AGGACAAAACCATTTGGAAATACAAGGACGAGCTAATCCGACGCACTATT
AAGGCGCTGGACACCCTCGGCTTCTTCCGCCGCCAAGGATTGAATTCCGC
TTCCGGTTCTGGGAGCAGCAGCAGCGGATTGGGCACCACCCACTCCACGG
AGCGGGCAAGCTTTCTAGACCAT
BO11242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3655-RD | 1692 | CG3655-PD | 1..1689 | 17..1705 | 8415 | 99.9 | Plus |
CG3655-RC | 1791 | CG3655-PC | 1..1689 | 17..1705 | 8415 | 99.9 | Plus |
CG3655-RB | 1692 | CG3655-PB | 1..1689 | 17..1705 | 8415 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3655-RD | 4325 | CG3655-RD | 1029..2725 | 9..1705 | 8425 | 99.8 | Plus |
CG3655-RC | 4766 | CG3655-RC | 1470..3166 | 9..1705 | 8425 | 99.8 | Plus |
CG3655-RB | 4995 | CG3655-RB | 834..2530 | 9..1705 | 8425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1075506..1076303 | 1705..908 | 3960 | 99.7 | Minus |
X | 23542271 | X | 1076431..1077100 | 912..243 | 3350 | 100 | Minus |
X | 23542271 | X | 1077210..1077446 | 245..9 | 1155 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:33:44 has no hits.
BO11242.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:08 Download gff for
BO11242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-RB | 655..2343 | 17..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:08 Download gff for
BO11242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-RB | 842..2530 | 17..1707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:28 Download gff for
BO11242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3655-RB | 842..2530 | 17..1707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:28 Download gff for
BO11242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1075503..1076300 | 911..1707 | 99 | <- | Minus |
X | 1076433..1077097 | 246..910 | 100 | <- | Minus |
X | 1077210..1077438 | 17..245 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:08 Download gff for
BO11242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 969536..970333 | 911..1707 | 99 | <- | Minus |
arm_X | 970466..971130 | 246..910 | 100 | <- | Minus |
arm_X | 971243..971471 | 17..245 | 100 | | Minus |
BO11242.pep Sequence
Translation from 16 to 1723
> BO11242.pep
MAHSKVILKILFSLCVWSFVIIGLFKMHGTNLVPQEYQQVPLNGRILLQK
DIRYAETTSTTTDHFDPSEILVDNRTAMDDDQLVRDVESRIPSLPIAYWS
KNKNFLQQKSSTCAKYPSIFELEFNNIYWQTLRTSNGTFQLFGAYYDIRR
TSLLGPTVRILGMIDRIEPKVKTYCQFWFDGQKEPFIVKTFEYKYIWYNK
WGNYKQGIYQPYLIACQIPKPFHGVVPSSVSMVEKECDTATNNLRVIYNR
PPDDQKKGFAVCVKGLDFLYDDLSVRLIEWIEMLNILGADKIYFYNLQVH
PNITKVLNHYEQEGKVQVIPLTLPGGQPNVPGFQHLYLTKKTNHKRQNEV
IPYNDCLYKNLYLYDYIALLDIDEVIMPKGGAVLWSELMDKVRPESRKIK
PDGFHSYNFRNVYFLDDQQHEHGWHKDIPKYMHMLQHVHRAKNYTKPNQY
VKCFHDPERVLTLHNHFPLSCLGGVCKSYPVDTKDAQLQHYRADCVKTLK
KSCEEYREHSVEDKTIWKYKDELIRRTIKALDTLGFFRRQGLNSASGSGS
SSSGLGTTHSTERASFLDH
BO11242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3655-PD | 563 | CG3655-PD | 1..563 | 1..563 | 3056 | 100 | Plus |
CG3655-PC | 596 | CG3655-PC | 1..563 | 1..563 | 3056 | 100 | Plus |
CG3655-PB | 563 | CG3655-PB | 1..563 | 1..563 | 3056 | 100 | Plus |
CG3655-PA | 563 | CG3655-PA | 1..563 | 1..563 | 3056 | 100 | Plus |
CG11384-PA | 588 | CG11384-PA | 68..533 | 81..523 | 820 | 37.6 | Plus |