Clone BO11243 Report

Search the DGRC for BO11243

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptVinc-RA
Protein status:BO11243.pep:
Sequenced Size:2917

Clone Sequence Records

BO11243.3prime Sequence

739 bp (662 high quality bases) assembled on 2006-04-19

> BO11243.3prime
ATGGTCTAGAAAGCTTGCGTACTGGTACCACGGCTGTCGGCGCACCCACT
GCAAACGATTGCTGGTTTGATCCGACCGGATCTTGATGCTGGCTCCTTCG
GCGGCGCGCACCGTCTCCTTCACGCTCTGCATCAGGTTCTGGGCATTGCC
CACAAGCATCTCGGTGGCCTCGCGATCCTCGTCGGATCCCTGGGCGCCCA
GCATCGTGGCCTTCACGGTGGACAGGATTTTCAGCTGGGTGCCGATGGTG
GGGATGCGTTCGCACACTTGGAGCAGGTTGGTGCGGATGCGTCGATCAGT
GCACTGGCGGGCCAACTCCTTAGCCAATCGGGTCACGTCCTCGGAGGCCT
CGGCGATCTTCTTGGCGGTGGCGATCAGCTCCCGCTTGCTGCCCCTCGAA
TCGGACAGCACTAGCTCGCTGAGGCGGGCCATCAGGATCGCCATGCGCTT
GGCGGCCGCAATGATCTCGTTGTCCTTGGACGACCACTGGCGCACCTCCT
GGTGCAAGCCACGGGCGGCGATCAAGATGGGCTGGTTGGCATGTGGCATC
GTGCGGAAGACGCCCTCGTCTTCATCATCCGTTTCCGGAGGTGGCGGACG
CACTGGCGCCAATCCTTCTCTTGGCAGTGGTGGGCGTGGAGGCGCACGCT
CGGCATTCTGGTTGGAAAGATGCAAGGCACTCAGCTCCGGAATGGGTGGC
GGCAGGGAAGTGGGCAGTGGTGGTGGCTGCGGTGGCGCA

BO11243.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3299-PA 2886 Vinc-RA 2163..2883 739..19 3580 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
Vinc-RC 3838 CG3299-RC 2447..3167 739..19 3590 99.9 Minus
Vinc-RB 3744 CG3299-RB 2353..3073 739..19 3590 99.9 Minus
Vinc-RA 3766 CG3299-RA 2375..3095 739..19 3590 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2215253..2215654 122..523 2010 100 Plus
X 23542271 X 2215713..2215844 523..654 660 100 Plus
X 23542271 X 2215018..2215122 19..123 525 100 Plus
X 23542271 X 2215905..2215990 654..739 415 98.8 Plus
Blast to na_te.dros performed on 2015-02-12 04:08:36 has no hits.

BO11243.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:52 Download gff for BO11243.3prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-PA 2164..2886 18..738 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:53 Download gff for BO11243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3299-PA 2164..2886 18..738 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:22:34 Download gff for BO11243.3prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 2376..3100 13..738 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:18 Download gff for BO11243.3prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 2376..3100 13..738 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:18 Download gff for BO11243.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2215013..2215122 13..123 97 <- Plus
X 2215255..2215653 124..522 100 <- Plus
X 2215713..2215843 523..653 100 <- Plus
X 2215905..2215989 654..738 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:22:34 Download gff for BO11243.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2109046..2109155 13..123 97 <- Plus
arm_X 2109288..2109686 124..522 100 <- Plus
arm_X 2109746..2109876 523..653 100 <- Plus
arm_X 2109938..2110022 654..738 98   Plus

BO11243.5prime Sequence

838 bp (681 high quality bases) assembled on 2006-04-19

> BO11243.5prime
GAAGTTATCAGTCGACATGCCCGTCTTTCACACAAAAACCATCGAGAGCA
TTCTAGATCCTGTTGCCCAACAGGTATCTCGTCTGGTGATCCTGCACGAG
GAGGCCGAGGATGGCAACGCGATGCCGGACCTCAGTCGACCGGTGCAGGT
GGTGTCGGCGGCAGTGGCTAATCTCGTGAAGGTGGGCCGCGATACGATCA
ACAGCTCCGACGACAAGATCCTGCGCCAGGACATGCCCTCGGCATTGCAC
CGCGTGGAGGGTGCCTCGCAGCTGCTGGAGGAGGCGTCCGATATGCTCCG
CTCCGACCCGTACTCGGGTCCGGCGCGCAAGAAGCTAATCGAGGGAAGCC
GCGGCATTCTGCAGGGCACCTCCTCGCTGCTGCTTTGCTTCGACGAGAGT
GAGGTGCGGAAGATCATCCAGGAGTGCAAGAGGGTACTGGACTACTTAGC
CGTGGCGGAGGTGATAAACACCATGGAACAGCTGGTGCAGTTCCTCAAGG
ACCTCTCGCCCTGTCTGAGCAAGGTGCACCGGGAGGTGGGCGCCCGCGAG
AAGGAGCTGACCCACCAGGTGCACAGCGAGATATTGGTGCGATGCTTGGA
GCAAGTGAAGACCCTGGCCCCAATCCTCATCTGCAGTATGAAGGTCTACA
TCCACATTGTGGAGCAGCAGGGCCGCGGAGCTGAGGAAGCGGCTGAGAAC
AGGAACTACCTGGCCGCCAGGATGAGCGACGAGCTGCAAGAGATCATCCG
CGTGCTGCAGCTGACTACCTACGATGAGGACACCAGCGAGCTGGACAACC
TCACTGTGCTGAAAAAGCTCTCCAATGCCATTTCCAAC

BO11243.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3299-PA 2886 Vinc-RA 1..822 17..838 4085 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
Vinc-RC 3838 CG3299-RC 285..1106 17..838 4095 99.9 Plus
Vinc-RB 3744 CG3299-RB 191..1012 17..838 4095 99.9 Plus
Vinc-RA 3766 CG3299-RA 213..1034 17..838 4095 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2217331..2218098 838..71 3825 99.9 Minus
X 23542271 X 2220370..2220429 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:39:36 has no hits.

BO11243.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:52 Download gff for BO11243.5prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-PA 1..822 17..838 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:55 Download gff for BO11243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3299-PA 1..822 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:48:06 Download gff for BO11243.5prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 205..1034 9..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:06:58 Download gff for BO11243.5prime
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 205..1034 9..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:06:58 Download gff for BO11243.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2217331..2218095 74..838 99 <- Minus
X 2220373..2220437 9..73 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:48:06 Download gff for BO11243.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2111364..2112128 74..838 99 <- Minus
arm_X 2114406..2114470 9..73 95   Minus

BO11243.complete Sequence

2917 bp assembled on 2008-01-16

GenBank Submission: FJ632038

> BO11243.complete
GAAGTTATCAGTCGACATGCCCGTCTTTCACACAAAAACCATCGAGAGCA
TTCTAGATCCTGTTGCCCAACAGGTATCTCGTCTGGTGATCCTGCACGAG
GAGGCCGAGGATGGCAACGCGATGCCGGACCTCAGTCGACCGGTGCAGGT
GGTGTCGGCGGCAGTGGCTAATCTCGTGAAGGTGGGCCGCGATACGATCA
ACAGCTCCGACGACAAGATCCTGCGCCAGGACATGCCCTCGGCATTGCAC
CGCGTGGAGGGTGCCTCGCAGCTGCTGGAGGAGGCGTCCGATATGCTCCG
CTCCGACCCGTACTCGGGTCCGGCGCGCAAGAAGCTAATCGAGGGAAGCC
GCGGCATTCTGCAGGGCACCTCCTCGCTGCTGCTTTGCTTCGACGAGAGT
GAGGTGCGGAAGATCATCCAGGAGTGCAAGAGGGTACTGGACTACTTAGC
CGTGGCGGAGGTGATAAACACCATGGAACAGCTGGTGCAGTTCCTCAAGG
ACCTCTCGCCCTGTCTGAGCAAGGTGCACCGGGAGGTGGGCGCCCGCGAG
AAGGAGCTGACCCACCAGGTGCACAGCGAGATATTGGTGCGATGCTTGGA
GCAAGTGAAGACCCTGGCCCCAATCCTCATCTGCAGTATGAAGGTCTACA
TCCACATTGTGGAGCAGCAGGGCCGCGGAGCTGAGGAAGCGGCTGAGAAC
AGGAACTACCTGGCCGCCAGGATGAGCGACGAGCTGCAGGAGATCATCCG
CGTGCTGCAGCTGACTACCTACGATGAGGACACCAGCGAGCTGGACAACC
TCACTGTGCTGAAAAAGCTCTCCAATGCCATTTCCAACAAAATGGAGCAG
GCCAACGAGTGGCTATCGAATCCCTATGCCTTGCGAGGCGGCGTGGGCGA
GAAGGCTCTGCGCCAAGTGATCGATAATGCTACGGAGATCTCAGAGCGCT
GTCTGCCCCAGGACTCTTATCCCATCCGCAAGCTGGCTGATGAGGTGACG
GCTATGGCCAACACCTTGTGCGAGCTGCGCCAGGAGGGCAAGGGCCAGAG
TCCCCAAGCGGAGTCCCTGGTCAGGGGCATACGCGATCGCATGGGAGAGC
TCAAATCCCTGGTGCACCAGGCGGTGCTCGGCGTGGATAAGGCTGGAGTT
CAACAGACGGCCCACACCATCCAGGGTCGATTAGAGCAGGCGGTGAAGTG
GCTTCAGCACCCGGAAATCAACGATGGTGGCCTCGGAGAGCGGGCTATTA
ACCTGATTGTGGAGGAGGGTCGCAAGGTAGCCGAGGGCTGCCCCGGCCAC
CAGAAGGCCGAGATCCAGCAGCTGTGTGACGAAGTGGAGCGCCTCAAACG
CCAGGCAGCCGGATCCGGCCCGGCGGCCAAGCAGGCCGCCAAGCAGCTCA
CCCAGAAGCTCTACGAGCTGAAGGCGGCTATCCAGAATGCCCTGGTCAAT
CGCATTGTGCAGGACTTCATGGACGTGAGCACCCCGCTAAAACAGTTTAC
GGAGGCGGTGCTCCAGCCAGAGGGAACACCCGGACGGGAGCAGAACTTCA
ACCAGAAGTCCAACAACCTGCAGGCCTTCAGCGATCGCGCCTCGAAGACC
TCCAGAATGGTGGCCGCCGGTGGAGCCTGCGGCAATAAGAAGATCGCCGA
GATTCTGCTCTCTTCCGCCGCCCAGGTGGACTCCCTCACACCTCAGCTTA
TCAGCGCTGGTCGCATCCGAATGAACTATCCGGGCAGCAAGGCCGCGGAC
GAGCATCTGCAGAACCTGAAGCAGCAGTACGCGGATACCGTGCTGCGCAT
GCGCACCCTCTGCGACCAGGCCACGGACCCGGCGGACTTCATTAAAACAT
CCGAGGAGCACATGCAGGTTTACGCCAAGCTCTGTGAGGATGCTATCCAT
GCCCGCCAGCCGCAGAAGATGGTGGACAACACCTCGAACATTGCCCGCCT
GATCAATAGGGTCTTGTTGGTAGCTAAACAGGAGGCGGATAACTCTGAGG
ATCCGGTGTTCACGGAGCGCTTGAATGCCGCCGCCAACCGGTTGGAGCGT
TCGCTGCCCGCCATGGTTGGCGACGCAAAGCTGGTGGCCACCAACATTGC
CGATCCGGCGGCAGCGGCCGCTTGGAAGAACTCCTTCCAGCGGCTCCTGG
GCGATGTGCGTGAGGTGCGAGACGCTATTGCGCCACCGCAGCCACCACCA
CTGCCCACTTCCCTGCCGCCACCCATTCCGGAGCTGAGTGCCCTGCATCT
TTCCAACCAGAATGCCGAGCGTGCGCCTCCACGCCCACCACTGCCAAGAG
AAGGATTGGCGCCAGTGCGTCCGCCACCTCCGGAAACGGATGATGAAGAC
GAGGGCGTCTTCCGCACGATGCCACATGCCAACCAGCCCATCTTGATCGC
CGCCCGTGGCTTGCACCAGGAGGTGCGCCAGTGGTCGTCCAAGGACAACG
AGATCATTGCGGCCGCCAAGCGCATGGCGATCCTGATGGCCCGCCTCAGC
GAGCTAGTGCTGTCCGATTCGAGGGGCAGCAAGCGGGAGCTGATCGCCAC
CGCCAAGAAGATCGCCGAGGCCTCCGAGGACGTGACCCGATTGGCTAAGG
AGTTGGCCCGCCAGTGCACTGATCGACGCATCCGCACCAACCTGCTCCAA
GTGTGCGAACGCATCCCCACCATCGGCACCCAGCTGAAAATCCTGTCCAC
CGTGAAGGCCACGATGCTGGGCGCCCAGGGATCCGACGAGGATCGCGAGG
CCACCGAGATGCTTGTGGGCAATGCCCAGAACCTGATGCAGAGCGTGAAG
GAGACGGTGCGCGCCGCCGAAGGAGCCAGCATCAAGATCCGGTCGGATCA
AACCAGCAATCGTTTGCAGTGGGTGCGCCGACAGCCGTGGTACCAGTACG
CAAGCTTTCTAGACCAT

BO11243.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Vinc-RC 2886 CG3299-PC 1..2883 17..2899 14415 100 Plus
Vinc-RB 2886 CG3299-PB 1..2883 17..2899 14415 100 Plus
Vinc-RA 2886 CG3299-PA 1..2883 17..2899 14415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
Vinc-RC 3838 CG3299-RC 285..3167 17..2899 14415 100 Plus
Vinc-RB 3744 CG3299-RB 191..3073 17..2899 14415 100 Plus
Vinc-RA 3766 CG3299-RA 213..3095 17..2899 14415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2215905..2218098 2264..71 10970 100 Minus
X 23542271 X 2215253..2215654 2796..2395 2010 100 Minus
X 23542271 X 2215713..2215844 2395..2264 660 100 Minus
X 23542271 X 2215018..2215122 2899..2795 525 100 Minus
X 23542271 X 2220370..2220429 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:10:50 has no hits.

BO11243.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:54 Download gff for BO11243.complete
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 1..2886 17..2900 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:42 Download gff for BO11243.complete
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 324..3206 17..2901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:45 Download gff for BO11243.complete
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 213..3095 17..2901 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:54 Download gff for BO11243.complete
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 316..3211 9..2905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:43 Download gff for BO11243.complete
Subject Subject Range Query Range Percent Splice Strand
Vinc-RA 213..3095 17..2901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:43 Download gff for BO11243.complete
Subject Subject Range Query Range Percent Splice Strand
X 2215016..2215122 2795..2901 98 <- Minus
X 2215255..2215653 2396..2794 100 <- Minus
X 2215713..2215843 2265..2395 100 <- Minus
X 2215905..2218095 74..2264 100 <- Minus
X 2220373..2220429 17..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:45 Download gff for BO11243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2109049..2109155 2795..2901 98 <- Minus
arm_X 2109288..2109686 2396..2794 100 <- Minus
arm_X 2109746..2109876 2265..2395 100 <- Minus
arm_X 2109938..2112128 74..2264 100 <- Minus
arm_X 2114406..2114462 17..73 100   Minus

BO11243.pep Sequence

Translation from 16 to 2917

> BO11243.pep
MPVFHTKTIESILDPVAQQVSRLVILHEEAEDGNAMPDLSRPVQVVSAAV
ANLVKVGRDTINSSDDKILRQDMPSALHRVEGASQLLEEASDMLRSDPYS
GPARKKLIEGSRGILQGTSSLLLCFDESEVRKIIQECKRVLDYLAVAEVI
NTMEQLVQFLKDLSPCLSKVHREVGAREKELTHQVHSEILVRCLEQVKTL
APILICSMKVYIHIVEQQGRGAEEAAENRNYLAARMSDELQEIIRVLQLT
TYDEDTSELDNLTVLKKLSNAISNKMEQANEWLSNPYALRGGVGEKALRQ
VIDNATEISERCLPQDSYPIRKLADEVTAMANTLCELRQEGKGQSPQAES
LVRGIRDRMGELKSLVHQAVLGVDKAGVQQTAHTIQGRLEQAVKWLQHPE
INDGGLGERAINLIVEEGRKVAEGCPGHQKAEIQQLCDEVERLKRQAAGS
GPAAKQAAKQLTQKLYELKAAIQNALVNRIVQDFMDVSTPLKQFTEAVLQ
PEGTPGREQNFNQKSNNLQAFSDRASKTSRMVAAGGACGNKKIAEILLSS
AAQVDSLTPQLISAGRIRMNYPGSKAADEHLQNLKQQYADTVLRMRTLCD
QATDPADFIKTSEEHMQVYAKLCEDAIHARQPQKMVDNTSNIARLINRVL
LVAKQEADNSEDPVFTERLNAAANRLERSLPAMVGDAKLVATNIADPAAA
AAWKNSFQRLLGDVREVRDAIAPPQPPPLPTSLPPPIPELSALHLSNQNA
ERAPPRPPLPREGLAPVRPPPPETDDEDEGVFRTMPHANQPILIAARGLH
QEVRQWSSKDNEIIAAAKRMAILMARLSELVLSDSRGSKRELIATAKKIA
EASEDVTRLAKELARQCTDRRIRTNLLQVCERIPTIGTQLKILSTVKATM
LGAQGSDEDREATEMLVGNAQNLMQSVKETVRAAEGASIKIRSDQTSNRL
QWVRRQPWYQYASFLDH

BO11243.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Vinc-PC 961 CG3299-PC 1..961 1..961 4839 100 Plus
Vinc-PB 961 CG3299-PB 1..961 1..961 4839 100 Plus
Vinc-PA 961 CG3299-PA 1..961 1..961 4839 100 Plus
alpha-Cat-PA 917 CG17947-PA 252..874 326..957 348 24.5 Plus