Clone Sequence Records
BO11243.3prime Sequence
739 bp (662 high quality bases) assembled on 2006-04-19
> BO11243.3prime
ATGGTCTAGAAAGCTTGCGTACTGGTACCACGGCTGTCGGCGCACCCACT
GCAAACGATTGCTGGTTTGATCCGACCGGATCTTGATGCTGGCTCCTTCG
GCGGCGCGCACCGTCTCCTTCACGCTCTGCATCAGGTTCTGGGCATTGCC
CACAAGCATCTCGGTGGCCTCGCGATCCTCGTCGGATCCCTGGGCGCCCA
GCATCGTGGCCTTCACGGTGGACAGGATTTTCAGCTGGGTGCCGATGGTG
GGGATGCGTTCGCACACTTGGAGCAGGTTGGTGCGGATGCGTCGATCAGT
GCACTGGCGGGCCAACTCCTTAGCCAATCGGGTCACGTCCTCGGAGGCCT
CGGCGATCTTCTTGGCGGTGGCGATCAGCTCCCGCTTGCTGCCCCTCGAA
TCGGACAGCACTAGCTCGCTGAGGCGGGCCATCAGGATCGCCATGCGCTT
GGCGGCCGCAATGATCTCGTTGTCCTTGGACGACCACTGGCGCACCTCCT
GGTGCAAGCCACGGGCGGCGATCAAGATGGGCTGGTTGGCATGTGGCATC
GTGCGGAAGACGCCCTCGTCTTCATCATCCGTTTCCGGAGGTGGCGGACG
CACTGGCGCCAATCCTTCTCTTGGCAGTGGTGGGCGTGGAGGCGCACGCT
CGGCATTCTGGTTGGAAAGATGCAAGGCACTCAGCTCCGGAATGGGTGGC
GGCAGGGAAGTGGGCAGTGGTGGTGGCTGCGGTGGCGCA
BO11243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3299-PA | 2886 | Vinc-RA | 2163..2883 | 739..19 | 3580 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vinc-RC | 3838 | CG3299-RC | 2447..3167 | 739..19 | 3590 | 99.9 | Minus |
Vinc-RB | 3744 | CG3299-RB | 2353..3073 | 739..19 | 3590 | 99.9 | Minus |
Vinc-RA | 3766 | CG3299-RA | 2375..3095 | 739..19 | 3590 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2215253..2215654 | 122..523 | 2010 | 100 | Plus |
X | 23542271 | X | 2215713..2215844 | 523..654 | 660 | 100 | Plus |
X | 23542271 | X | 2215018..2215122 | 19..123 | 525 | 100 | Plus |
X | 23542271 | X | 2215905..2215990 | 654..739 | 415 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:08:36 has no hits.
BO11243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:52 Download gff for
BO11243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-PA | 2164..2886 | 18..738 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:53 Download gff for
BO11243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3299-PA | 2164..2886 | 18..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:22:34 Download gff for
BO11243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-RA | 2376..3100 | 13..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:18 Download gff for
BO11243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-RA | 2376..3100 | 13..738 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:18 Download gff for
BO11243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2215013..2215122 | 13..123 | 97 | <- | Plus |
X | 2215255..2215653 | 124..522 | 100 | <- | Plus |
X | 2215713..2215843 | 523..653 | 100 | <- | Plus |
X | 2215905..2215989 | 654..738 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:22:34 Download gff for
BO11243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2109046..2109155 | 13..123 | 97 | <- | Plus |
arm_X | 2109288..2109686 | 124..522 | 100 | <- | Plus |
arm_X | 2109746..2109876 | 523..653 | 100 | <- | Plus |
arm_X | 2109938..2110022 | 654..738 | 98 | | Plus |
BO11243.5prime Sequence
838 bp (681 high quality bases) assembled on 2006-04-19
> BO11243.5prime
GAAGTTATCAGTCGACATGCCCGTCTTTCACACAAAAACCATCGAGAGCA
TTCTAGATCCTGTTGCCCAACAGGTATCTCGTCTGGTGATCCTGCACGAG
GAGGCCGAGGATGGCAACGCGATGCCGGACCTCAGTCGACCGGTGCAGGT
GGTGTCGGCGGCAGTGGCTAATCTCGTGAAGGTGGGCCGCGATACGATCA
ACAGCTCCGACGACAAGATCCTGCGCCAGGACATGCCCTCGGCATTGCAC
CGCGTGGAGGGTGCCTCGCAGCTGCTGGAGGAGGCGTCCGATATGCTCCG
CTCCGACCCGTACTCGGGTCCGGCGCGCAAGAAGCTAATCGAGGGAAGCC
GCGGCATTCTGCAGGGCACCTCCTCGCTGCTGCTTTGCTTCGACGAGAGT
GAGGTGCGGAAGATCATCCAGGAGTGCAAGAGGGTACTGGACTACTTAGC
CGTGGCGGAGGTGATAAACACCATGGAACAGCTGGTGCAGTTCCTCAAGG
ACCTCTCGCCCTGTCTGAGCAAGGTGCACCGGGAGGTGGGCGCCCGCGAG
AAGGAGCTGACCCACCAGGTGCACAGCGAGATATTGGTGCGATGCTTGGA
GCAAGTGAAGACCCTGGCCCCAATCCTCATCTGCAGTATGAAGGTCTACA
TCCACATTGTGGAGCAGCAGGGCCGCGGAGCTGAGGAAGCGGCTGAGAAC
AGGAACTACCTGGCCGCCAGGATGAGCGACGAGCTGCAAGAGATCATCCG
CGTGCTGCAGCTGACTACCTACGATGAGGACACCAGCGAGCTGGACAACC
TCACTGTGCTGAAAAAGCTCTCCAATGCCATTTCCAAC
BO11243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3299-PA | 2886 | Vinc-RA | 1..822 | 17..838 | 4085 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vinc-RC | 3838 | CG3299-RC | 285..1106 | 17..838 | 4095 | 99.9 | Plus |
Vinc-RB | 3744 | CG3299-RB | 191..1012 | 17..838 | 4095 | 99.9 | Plus |
Vinc-RA | 3766 | CG3299-RA | 213..1034 | 17..838 | 4095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2217331..2218098 | 838..71 | 3825 | 99.9 | Minus |
X | 23542271 | X | 2220370..2220429 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:39:36 has no hits.
BO11243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:52 Download gff for
BO11243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:23:55 Download gff for
BO11243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3299-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:48:06 Download gff for
BO11243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-RA | 205..1034 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:06:58 Download gff for
BO11243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-RA | 205..1034 | 9..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:06:58 Download gff for
BO11243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2217331..2218095 | 74..838 | 99 | <- | Minus |
X | 2220373..2220437 | 9..73 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:48:06 Download gff for
BO11243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2111364..2112128 | 74..838 | 99 | <- | Minus |
arm_X | 2114406..2114470 | 9..73 | 95 | | Minus |
BO11243.complete Sequence
2917 bp assembled on 2008-01-16
GenBank Submission: FJ632038
> BO11243.complete
GAAGTTATCAGTCGACATGCCCGTCTTTCACACAAAAACCATCGAGAGCA
TTCTAGATCCTGTTGCCCAACAGGTATCTCGTCTGGTGATCCTGCACGAG
GAGGCCGAGGATGGCAACGCGATGCCGGACCTCAGTCGACCGGTGCAGGT
GGTGTCGGCGGCAGTGGCTAATCTCGTGAAGGTGGGCCGCGATACGATCA
ACAGCTCCGACGACAAGATCCTGCGCCAGGACATGCCCTCGGCATTGCAC
CGCGTGGAGGGTGCCTCGCAGCTGCTGGAGGAGGCGTCCGATATGCTCCG
CTCCGACCCGTACTCGGGTCCGGCGCGCAAGAAGCTAATCGAGGGAAGCC
GCGGCATTCTGCAGGGCACCTCCTCGCTGCTGCTTTGCTTCGACGAGAGT
GAGGTGCGGAAGATCATCCAGGAGTGCAAGAGGGTACTGGACTACTTAGC
CGTGGCGGAGGTGATAAACACCATGGAACAGCTGGTGCAGTTCCTCAAGG
ACCTCTCGCCCTGTCTGAGCAAGGTGCACCGGGAGGTGGGCGCCCGCGAG
AAGGAGCTGACCCACCAGGTGCACAGCGAGATATTGGTGCGATGCTTGGA
GCAAGTGAAGACCCTGGCCCCAATCCTCATCTGCAGTATGAAGGTCTACA
TCCACATTGTGGAGCAGCAGGGCCGCGGAGCTGAGGAAGCGGCTGAGAAC
AGGAACTACCTGGCCGCCAGGATGAGCGACGAGCTGCAGGAGATCATCCG
CGTGCTGCAGCTGACTACCTACGATGAGGACACCAGCGAGCTGGACAACC
TCACTGTGCTGAAAAAGCTCTCCAATGCCATTTCCAACAAAATGGAGCAG
GCCAACGAGTGGCTATCGAATCCCTATGCCTTGCGAGGCGGCGTGGGCGA
GAAGGCTCTGCGCCAAGTGATCGATAATGCTACGGAGATCTCAGAGCGCT
GTCTGCCCCAGGACTCTTATCCCATCCGCAAGCTGGCTGATGAGGTGACG
GCTATGGCCAACACCTTGTGCGAGCTGCGCCAGGAGGGCAAGGGCCAGAG
TCCCCAAGCGGAGTCCCTGGTCAGGGGCATACGCGATCGCATGGGAGAGC
TCAAATCCCTGGTGCACCAGGCGGTGCTCGGCGTGGATAAGGCTGGAGTT
CAACAGACGGCCCACACCATCCAGGGTCGATTAGAGCAGGCGGTGAAGTG
GCTTCAGCACCCGGAAATCAACGATGGTGGCCTCGGAGAGCGGGCTATTA
ACCTGATTGTGGAGGAGGGTCGCAAGGTAGCCGAGGGCTGCCCCGGCCAC
CAGAAGGCCGAGATCCAGCAGCTGTGTGACGAAGTGGAGCGCCTCAAACG
CCAGGCAGCCGGATCCGGCCCGGCGGCCAAGCAGGCCGCCAAGCAGCTCA
CCCAGAAGCTCTACGAGCTGAAGGCGGCTATCCAGAATGCCCTGGTCAAT
CGCATTGTGCAGGACTTCATGGACGTGAGCACCCCGCTAAAACAGTTTAC
GGAGGCGGTGCTCCAGCCAGAGGGAACACCCGGACGGGAGCAGAACTTCA
ACCAGAAGTCCAACAACCTGCAGGCCTTCAGCGATCGCGCCTCGAAGACC
TCCAGAATGGTGGCCGCCGGTGGAGCCTGCGGCAATAAGAAGATCGCCGA
GATTCTGCTCTCTTCCGCCGCCCAGGTGGACTCCCTCACACCTCAGCTTA
TCAGCGCTGGTCGCATCCGAATGAACTATCCGGGCAGCAAGGCCGCGGAC
GAGCATCTGCAGAACCTGAAGCAGCAGTACGCGGATACCGTGCTGCGCAT
GCGCACCCTCTGCGACCAGGCCACGGACCCGGCGGACTTCATTAAAACAT
CCGAGGAGCACATGCAGGTTTACGCCAAGCTCTGTGAGGATGCTATCCAT
GCCCGCCAGCCGCAGAAGATGGTGGACAACACCTCGAACATTGCCCGCCT
GATCAATAGGGTCTTGTTGGTAGCTAAACAGGAGGCGGATAACTCTGAGG
ATCCGGTGTTCACGGAGCGCTTGAATGCCGCCGCCAACCGGTTGGAGCGT
TCGCTGCCCGCCATGGTTGGCGACGCAAAGCTGGTGGCCACCAACATTGC
CGATCCGGCGGCAGCGGCCGCTTGGAAGAACTCCTTCCAGCGGCTCCTGG
GCGATGTGCGTGAGGTGCGAGACGCTATTGCGCCACCGCAGCCACCACCA
CTGCCCACTTCCCTGCCGCCACCCATTCCGGAGCTGAGTGCCCTGCATCT
TTCCAACCAGAATGCCGAGCGTGCGCCTCCACGCCCACCACTGCCAAGAG
AAGGATTGGCGCCAGTGCGTCCGCCACCTCCGGAAACGGATGATGAAGAC
GAGGGCGTCTTCCGCACGATGCCACATGCCAACCAGCCCATCTTGATCGC
CGCCCGTGGCTTGCACCAGGAGGTGCGCCAGTGGTCGTCCAAGGACAACG
AGATCATTGCGGCCGCCAAGCGCATGGCGATCCTGATGGCCCGCCTCAGC
GAGCTAGTGCTGTCCGATTCGAGGGGCAGCAAGCGGGAGCTGATCGCCAC
CGCCAAGAAGATCGCCGAGGCCTCCGAGGACGTGACCCGATTGGCTAAGG
AGTTGGCCCGCCAGTGCACTGATCGACGCATCCGCACCAACCTGCTCCAA
GTGTGCGAACGCATCCCCACCATCGGCACCCAGCTGAAAATCCTGTCCAC
CGTGAAGGCCACGATGCTGGGCGCCCAGGGATCCGACGAGGATCGCGAGG
CCACCGAGATGCTTGTGGGCAATGCCCAGAACCTGATGCAGAGCGTGAAG
GAGACGGTGCGCGCCGCCGAAGGAGCCAGCATCAAGATCCGGTCGGATCA
AACCAGCAATCGTTTGCAGTGGGTGCGCCGACAGCCGTGGTACCAGTACG
CAAGCTTTCTAGACCAT
BO11243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vinc-RC | 2886 | CG3299-PC | 1..2883 | 17..2899 | 14415 | 100 | Plus |
Vinc-RB | 2886 | CG3299-PB | 1..2883 | 17..2899 | 14415 | 100 | Plus |
Vinc-RA | 2886 | CG3299-PA | 1..2883 | 17..2899 | 14415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vinc-RC | 3838 | CG3299-RC | 285..3167 | 17..2899 | 14415 | 100 | Plus |
Vinc-RB | 3744 | CG3299-RB | 191..3073 | 17..2899 | 14415 | 100 | Plus |
Vinc-RA | 3766 | CG3299-RA | 213..3095 | 17..2899 | 14415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2215905..2218098 | 2264..71 | 10970 | 100 | Minus |
X | 23542271 | X | 2215253..2215654 | 2796..2395 | 2010 | 100 | Minus |
X | 23542271 | X | 2215713..2215844 | 2395..2264 | 660 | 100 | Minus |
X | 23542271 | X | 2215018..2215122 | 2899..2795 | 525 | 100 | Minus |
X | 23542271 | X | 2220370..2220429 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:10:50 has no hits.
BO11243.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:54 Download gff for
BO11243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-RA | 1..2886 | 17..2900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:42 Download gff for
BO11243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-RA | 324..3206 | 17..2901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:45 Download gff for
BO11243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-RA | 213..3095 | 17..2901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:54 Download gff for
BO11243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-RA | 316..3211 | 9..2905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:43 Download gff for
BO11243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vinc-RA | 213..3095 | 17..2901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:43 Download gff for
BO11243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2215016..2215122 | 2795..2901 | 98 | <- | Minus |
X | 2215255..2215653 | 2396..2794 | 100 | <- | Minus |
X | 2215713..2215843 | 2265..2395 | 100 | <- | Minus |
X | 2215905..2218095 | 74..2264 | 100 | <- | Minus |
X | 2220373..2220429 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:45 Download gff for
BO11243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2109049..2109155 | 2795..2901 | 98 | <- | Minus |
arm_X | 2109288..2109686 | 2396..2794 | 100 | <- | Minus |
arm_X | 2109746..2109876 | 2265..2395 | 100 | <- | Minus |
arm_X | 2109938..2112128 | 74..2264 | 100 | <- | Minus |
arm_X | 2114406..2114462 | 17..73 | 100 | | Minus |
BO11243.pep Sequence
Translation from 16 to 2917
> BO11243.pep
MPVFHTKTIESILDPVAQQVSRLVILHEEAEDGNAMPDLSRPVQVVSAAV
ANLVKVGRDTINSSDDKILRQDMPSALHRVEGASQLLEEASDMLRSDPYS
GPARKKLIEGSRGILQGTSSLLLCFDESEVRKIIQECKRVLDYLAVAEVI
NTMEQLVQFLKDLSPCLSKVHREVGAREKELTHQVHSEILVRCLEQVKTL
APILICSMKVYIHIVEQQGRGAEEAAENRNYLAARMSDELQEIIRVLQLT
TYDEDTSELDNLTVLKKLSNAISNKMEQANEWLSNPYALRGGVGEKALRQ
VIDNATEISERCLPQDSYPIRKLADEVTAMANTLCELRQEGKGQSPQAES
LVRGIRDRMGELKSLVHQAVLGVDKAGVQQTAHTIQGRLEQAVKWLQHPE
INDGGLGERAINLIVEEGRKVAEGCPGHQKAEIQQLCDEVERLKRQAAGS
GPAAKQAAKQLTQKLYELKAAIQNALVNRIVQDFMDVSTPLKQFTEAVLQ
PEGTPGREQNFNQKSNNLQAFSDRASKTSRMVAAGGACGNKKIAEILLSS
AAQVDSLTPQLISAGRIRMNYPGSKAADEHLQNLKQQYADTVLRMRTLCD
QATDPADFIKTSEEHMQVYAKLCEDAIHARQPQKMVDNTSNIARLINRVL
LVAKQEADNSEDPVFTERLNAAANRLERSLPAMVGDAKLVATNIADPAAA
AAWKNSFQRLLGDVREVRDAIAPPQPPPLPTSLPPPIPELSALHLSNQNA
ERAPPRPPLPREGLAPVRPPPPETDDEDEGVFRTMPHANQPILIAARGLH
QEVRQWSSKDNEIIAAAKRMAILMARLSELVLSDSRGSKRELIATAKKIA
EASEDVTRLAKELARQCTDRRIRTNLLQVCERIPTIGTQLKILSTVKATM
LGAQGSDEDREATEMLVGNAQNLMQSVKETVRAAEGASIKIRSDQTSNRL
QWVRRQPWYQYASFLDH
BO11243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vinc-PC | 961 | CG3299-PC | 1..961 | 1..961 | 4839 | 100 | Plus |
Vinc-PB | 961 | CG3299-PB | 1..961 | 1..961 | 4839 | 100 | Plus |
Vinc-PA | 961 | CG3299-PA | 1..961 | 1..961 | 4839 | 100 | Plus |
alpha-Cat-PA | 917 | CG17947-PA | 252..874 | 326..957 | 348 | 24.5 | Plus |