Clone Sequence Records
BO11248.3prime Sequence
763 bp (715 high quality bases) assembled on 2006-04-19
> BO11248.3prime
ATGGTCTAGAAAGCTTGCTTCGCTGCGCAGTTTCTTTAGATCCGGTGACT
TCTCCCCCACGCCCACACCCACTCCGCCGGCGTTCTTCAGCTCCATATCG
CAGTGCAGGGCAGTACGCTTCTGTCCAATGGCTGGTGCCGAGTCTGCACC
CGCTGCTACCGGTGAAACCGCATCCACCGCCTTGTTCGCCGCCAGCTGCT
GCAGTTTACTGTCCCTCACAATGCCGTTGCTGCTATTGCTCTCGTCAGCC
TCTAGCTCCGCCTCATTATCCTCCTCCTCGTCCAGCTCATCTTCCTCCTC
GTCCTCCGCCTCATCCTCATCCTCGTCGCCCAGGACGCCGTTCCCGTTAC
CATTTCCATTGGCTGGTGCTGCAGTCGCTTTGCTGGCTGGCTGTGGTGCT
GCTGTAACCGCTTCCTCTTCTGCCAAAGGAGCAGGCTGACCGTTGTTGGT
GATCGAATTGTTAGTTTTGTGGGGCTGGCTCGGCGACTGCTTTTGATTCT
GATTCTGGCTCGAGTGCTGTGTGGGAGTCAGGATGGGCAGGCTGTTGGTC
TTGGGCGGCGCCTCCTGATTGCTTTCAGAGTCCGAGGCGAGCGGTGTTCC
ACTCGAACCGATGCCAATGCCAATGTCTAGGGCGATGGGCTCACCGTCCT
CTGTGGAAGTGGTGGCCGTTGTCTGTGTGGTGCCATCGTTGTCATCGATG
ATCGGCTCCTGGGAGGTGGAATCGTTCGAAACAAAGTTGGAGTCACCGTC
CTGCAGGGCGGCG
BO11248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2446-PB | 1653 | CG2446-RB | 906..1650 | 763..19 | 3725 | 100 | Minus |
| CG2446-PD | 1653 | CG2446-RD | 906..1650 | 763..19 | 3725 | 100 | Minus |
| CG2446-PC | 1653 | CG2446-RC | 906..1650 | 763..19 | 3725 | 100 | Minus |
| CG2446-PE | 1653 | CG2446-RE | 906..1650 | 763..19 | 3725 | 100 | Minus |
| CG2446-PA | 1653 | CG2446-RA | 906..1650 | 763..19 | 3725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amun-RK | 3028 | CG2446-RK | 1595..2339 | 763..19 | 3725 | 100 | Minus |
| Amun-RJ | 2658 | CG2446-RJ | 1225..1969 | 763..19 | 3725 | 100 | Minus |
| Amun-RL | 2622 | CG2446-RL | 1189..1933 | 763..19 | 3725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11711513..11712257 | 19..763 | 3725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:04:55 has no hits.
BO11248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:57 Download gff for
BO11248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2446-PC | 906..1653 | 16..763 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:02 Download gff for
BO11248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2446-PA | 906..1653 | 16..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:09:09 Download gff for
BO11248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amun-RI | 1553..2303 | 13..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:12 Download gff for
BO11248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amun-RL | 1189..1939 | 13..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:12 Download gff for
BO11248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11711507..11712257 | 13..763 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:09:09 Download gff for
BO11248.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11605540..11606290 | 13..763 | 99 | | Plus |
BO11248.5prime Sequence
804 bp (751 high quality bases) assembled on 2006-04-19
> BO11248.5prime
GAAGTTATCAGTCGACATGTCCAACGGCAAGGCGACGGTCTCGTTCTTCG
AGACCGGGAGCACCAAACAGTTCGAGTACTGCTACCAGCTCTATCCCCAG
GTTCTTAAGCTAAAGGCCGAGAAGCGCTGCAAGAAGCCGCAAGAGCTGAT
CCGCCTGGATCAGTGGTATCAGAATGAACTGCCCAAATTGATTAAGGCAC
GCGGCAAGGACGCGCATATGGTATACGATGAGCTCGTCCAGTCGATGAAG
TGGAAGCAGTCGCGCGGCAAATTCTATCCGCAGCTATCCTACCTGGTCAA
GGTCAACACACCGCGCGCCGTCATCCAGGAGACAAAGAAGGCCTTCCGCA
AGCTGCCCAATCTGGAGCAGGCGATCACAGCTTTATCGAACCTCAAGGGC
GTTGGCACCACAATGGCCAGTGCACTGCTGGCAGCCGCAGCTCCCGATTC
GGCACCATTCATGGCCGACGAGTGCCTGATGGCCATACCAGAGATCGAGG
GCATCGATTACACCACCAAGGAGTACCTCAACTTCGTCAATCACATTCAG
GCCACCGTGGAGCGCCTCAATGCGGAGGTGGGCGGGGATACGCCGCACTG
GTCGCCTCATCGCGTGGAGCTGGCCCTCTGGTCACACTATGTGGCCAATG
ATCTCAGTCCCGAGATGCTCGACGATATGCCGCCGCCTGGATCCGGCGCC
TCCACTGGCACCGGTTCACTCAGCACAAACGGCAACAGCAGCAAGGTGCT
CGATGGCGACGATACCAACGATGGTGTGGGTGTTGATTTGGACGACGAAA
GCCA
BO11248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2446-PB | 1653 | CG2446-RB | 1..788 | 17..804 | 3940 | 100 | Plus |
| CG2446-PD | 1653 | CG2446-RD | 1..788 | 17..804 | 3940 | 100 | Plus |
| CG2446-PC | 1653 | CG2446-RC | 1..788 | 17..804 | 3940 | 100 | Plus |
| CG2446-PE | 1653 | CG2446-RE | 1..788 | 17..804 | 3940 | 100 | Plus |
| CG2446-PA | 1653 | CG2446-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amun-RK | 3028 | CG2446-RK | 690..1477 | 17..804 | 3940 | 100 | Plus |
| Amun-RJ | 2658 | CG2446-RJ | 320..1107 | 17..804 | 3940 | 100 | Plus |
| Amun-RL | 2622 | CG2446-RL | 284..1071 | 17..804 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11712777..11713564 | 804..17 | 3940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:38:59 has no hits.
BO11248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:01:58 Download gff for
BO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2446-PC | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:04 Download gff for
BO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2446-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:48:31 Download gff for
BO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amun-RI | 642..1434 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:12 Download gff for
BO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amun-RL | 278..1070 | 9..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:12 Download gff for
BO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11712778..11713570 | 9..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:48:31 Download gff for
BO11248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11606811..11607603 | 9..803 | 99 | | Minus |
BO11248.complete Sequence
1684 bp assembled on 2008-01-16
GenBank Submission: FJ632040
> BO11248.complete
GAAGTTATCAGTCGACATGTCCAACGGCAAGGCGACGGTCTCGTTCTTCG
AGACCGGGAGCACCAAACAGTTCGAGTACTGCTACCAGCTCTATCCCCAG
GTTCTTAAGCTAAAGGCCGAGAAGCGCTGCAAGAAGCCGCAAGAGCTGAT
CCGCCTGGATCAGTGGTATCAGAATGAACTGCCCAAATTGATTAAGGCAC
GCGGCAAGGACGCGCATATGGTATACGATGAGCTCGTCCAGTCGATGAAG
TGGAAGCAGTCGCGCGGCAAATTCTATCCGCAGCTATCCTACCTGGTCAA
GGTCAACACACCGCGCGCCGTCATCCAGGAGACAAAGAAGGCCTTCCGCA
AGCTGCCCAATCTGGAGCAGGCGATCACAGCTTTATCGAACCTCAAGGGC
GTTGGCACCACAATGGCCAGTGCACTGCTGGCAGCCGCAGCTCCCGATTC
GGCACCATTCATGGCCGACGAGTGCCTGATGGCCATACCAGAGATCGAGG
GCATCGATTACACCACCAAGGAGTACCTCAACTTCGTCAATCACATTCAG
GCCACCGTGGAGCGCCTCAATGCGGAGGTGGGCGGGGATACGCCGCACTG
GTCGCCTCATCGCGTGGAGCTGGCCCTCTGGTCACACTATGTGGCCAATG
ATCTCAGTCCCGAGATGCTCGACGATATGCCGCCGCCTGGATCCGGCGCC
TCCACTGGCACCGGTTCACTCAGCACAAACGGCAACAGCAGCAAGGTGCT
CGATGGCGACGATACCAACGATGGTGTGGGTGTTGATTTGGACGACGAAA
GCCAAGGAGCAGGCGGTCGCAACACTGCTACAGAATCGGAGACAGAGAAT
GAGAACACCAACCCGGCTGCTCTGACGCCTCTACAGTCGGGCGAGGCCAA
GAACAACGCAGCTGCCGTTGGCGCCGCCCTGCAGGACGGTGACTCCAACT
TTGTTTCGAACGATTCCACCTCCCAGGAGCCGATCATCGATGACAACGAT
GGCACCACACAGACAACGGCCACCACTTCCACAGAGGACGGTGAGCCCAT
CGCCCTAGACATTGGCATTGGCATCGGTTCGAGTGGAACACCGCTCGCCT
CGGACTCTGAAAGCAATCAGGAGGCGCCGCCCAAGACCAACAGCCTGCCC
ATCCTGACTCCCACACAGCACTCGAGCCAGAATCAGAATCAAAAGCAGTC
GCCGAGCCAGCCCCACAAAACTAACAATTCGATCACCAACAACGGTCAGC
CTGCTCCTTTGGCAGAAGAGGAAGCGGTTACAGCAGCACCACAGCCAGCC
AGCAAAGCGACTGCAGCACCAGCCAATGGAAATGGTAACGGGAACGGCGT
CCTGGGCGACGAGGATGAGGATGAGGCGGAGGACGAGGAGGAAGATGAGC
TGGACGAGGAGGAGGATAATGAGGCGGAGCTAGAGGCTGACGAGAGCAAT
AGCAGCAACGGCATTGTGAGGGACAGTAAACTGCAGCAGCTGGCGGCGAA
CAAGGCGGTGGATGCGGTTTCACCGGTAGCAGCGGGTGCAGACTCGGCAC
CAGCCATTGGACAGAAGCGTACTGCCCTGCACTGCGATATGGAGCTGAAG
AACGCCGGCGGAGTGGGTGTGGGCGTGGGGGAGAAGTCACCGGATCTAAA
GAAACTGCGCAGCGAAGCAAGCTTTCTAGACCAT
BO11248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amun-RK | 1653 | CG2446-PK | 1..1650 | 17..1666 | 8250 | 100 | Plus |
| Amun-RJ | 1653 | CG2446-PJ | 1..1650 | 17..1666 | 8250 | 100 | Plus |
| Amun-RL | 1653 | CG2446-PL | 1..1650 | 17..1666 | 8250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amun-RK | 3028 | CG2446-RK | 690..2339 | 17..1666 | 8250 | 100 | Plus |
| Amun-RJ | 2658 | CG2446-RJ | 320..1969 | 17..1666 | 8250 | 100 | Plus |
| Amun-RL | 2622 | CG2446-RL | 284..1933 | 17..1666 | 8250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11711513..11712369 | 1666..810 | 4285 | 100 | Minus |
| X | 23542271 | X | 11712768..11713564 | 813..17 | 3985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:03:47 has no hits.
BO11248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:56 Download gff for
BO11248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2446-RC | 1..1653 | 17..1669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:41 Download gff for
BO11248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2446-RC | 672..2321 | 17..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:03 Download gff for
BO11248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amun-RI | 648..2297 | 17..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:56 Download gff for
BO11248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2446-RC | 666..2327 | 9..1672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:35 Download gff for
BO11248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amun-RL | 284..1933 | 17..1668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:35 Download gff for
BO11248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11711510..11712366 | 813..1668 | 99 | <- | Minus |
| X | 11712769..11713564 | 17..812 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:03 Download gff for
BO11248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11605543..11606399 | 813..1668 | 99 | <- | Minus |
| arm_X | 11606802..11607597 | 17..812 | 100 | | Minus |
BO11248.pep Sequence
Translation from 16 to 1684
> BO11248.pep
MSNGKATVSFFETGSTKQFEYCYQLYPQVLKLKAEKRCKKPQELIRLDQW
YQNELPKLIKARGKDAHMVYDELVQSMKWKQSRGKFYPQLSYLVKVNTPR
AVIQETKKAFRKLPNLEQAITALSNLKGVGTTMASALLAAAAPDSAPFMA
DECLMAIPEIEGIDYTTKEYLNFVNHIQATVERLNAEVGGDTPHWSPHRV
ELALWSHYVANDLSPEMLDDMPPPGSGASTGTGSLSTNGNSSKVLDGDDT
NDGVGVDLDDESQGAGGRNTATESETENENTNPAALTPLQSGEAKNNAAA
VGAALQDGDSNFVSNDSTSQEPIIDDNDGTTQTTATTSTEDGEPIALDIG
IGIGSSGTPLASDSESNQEAPPKTNSLPILTPTQHSSQNQNQKQSPSQPH
KTNNSITNNGQPAPLAEEEAVTAAPQPASKATAAPANGNGNGNGVLGDED
EDEAEDEEEDELDEEEDNEAELEADESNSSNGIVRDSKLQQLAANKAVDA
VSPVAAGADSAPAIGQKRTALHCDMELKNAGGVGVGVGEKSPDLKKLRSE
ASFLDH
BO11248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amun-PK | 550 | CG2446-PK | 1..550 | 1..550 | 2836 | 100 | Plus |
| Amun-PJ | 550 | CG2446-PJ | 1..550 | 1..550 | 2836 | 100 | Plus |
| Amun-PL | 550 | CG2446-PL | 1..550 | 1..550 | 2836 | 100 | Plus |
| Amun-PI | 550 | CG2446-PI | 1..550 | 1..550 | 2836 | 100 | Plus |
| Amun-PH | 550 | CG2446-PH | 1..550 | 1..550 | 2836 | 100 | Plus |
