Clone Sequence Records
BO11250.3prime Sequence
791 bp (740 high quality bases) assembled on 2006-04-19
> BO11250.3prime
ATGGTCTAGAAAGCTTGCGACGGCGGTGCCATTGATGAGATCGTAGGGAT
CCCTCACCTGACCCATTCCAAATAGACTGGCATGGGATCGCCGTCGCTCC
CGCTCGATCTCGTCCAGGTCGAATGCATCGCTCACAAAACTGGACCTACG
CTGTTGATCGTCGAATGCGTAGCCGCGCTGGAATTTCGGTGGTCCGGAGA
CCGAAGCCGTTGTCCCAGGTGCTCCACTTCCGGATGTTGGAGCTGGGTAA
ATGGGCTGCGGATGCTGTTGATAGCCATTCGAGTAGTTCGACGGCGAGGA
GGGAATCGCCGTGGGCCACTGCACTTGACTCTTGGGCGCCACCACCTGGG
GCAGTGTCAACGTGGAGGACACGAAGCGATTCTGCTGCTGATTCAGCATC
AGCTGGGAGAAACGCTGCTGACTGGAGCCCAATGGATAGCCCTGGGAAGC
CAGCGAATCGGACGACTGTCGCAGAAAGCAGCGCGGCAAGGTGCGACTCT
GGCCGAGATCAGCCGGCTGTGGCAGGGACATTCGCATGCCCGGATAGCCA
CCCGTTCCGGGGAAGCTGAGATCCGTGTGCAGGGACAGATTCGAGTTCAG
TCTGCGCAGCGGCTGTCCCATGGAGTCCACGCACATGGACGTGCGACGCG
GCACCACCAATTGGGCATGGTCTCCCACCACATAGAGATGTTCCTCCTCC
ATGCGGTTGAACTGCCTGAAACCGTGGTCATCGCCATCCGCGTCATCGTC
GTCATCGCGATGCGGATCATCCGGAACTTCCTCCCGCTTGG
BO11250.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11566-PA | 1773 | CG11566-RA | 998..1770 | 791..19 | 3865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11566-RA | 3798 | CG11566-RA | 2729..3501 | 791..19 | 3865 | 100 | Minus |
| stg1-RA | 3798 | CG33670-RA | 2729..3501 | 791..19 | 3865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21110466..21111120 | 673..19 | 3275 | 100 | Minus |
| X | 23542271 | X | 21110232..21110351 | 791..672 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:58:59 has no hits.
BO11250.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:01 Download gff for
BO11250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11566-PA | 998..1773 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:07 Download gff for
BO11250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11566-PA | 998..1773 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:59:03 Download gff for
BO11250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 2729..3505 | 14..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:46 Download gff for
BO11250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 2729..3505 | 14..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:46 Download gff for
BO11250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21110232..21110351 | 672..791 | 100 | -> | Minus |
| X | 21110468..21111124 | 14..671 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:59:03 Download gff for
BO11250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20981259..20981378 | 672..791 | 100 | -> | Minus |
| arm_X | 20981495..20982151 | 14..671 | 99 | | Minus |
BO11250.5prime Sequence
796 bp (786 high quality bases) assembled on 2006-04-19
> BO11250.5prime
GAAGTTATCAGTCGGACATGCAAGCGTCGCCGGATGCGTCCTTCGGGATT
AGCTGCATCTTCTGCTGCGCTCTCTGTGTTCTTCACATACTTTATTTCCA
TACGTACATTTCCCTCCAGCGCTTGCCCTGTTTTAGTGTGGCAAACATCC
ACGCCAAGTTAAAGGAGGGCCAGCATCCGTTGAGTGATTCCTACAAGCGG
TACAAGCAGCCCGGCATCACCACAGCCAGCCAGGAAGGACTTAGTAGCGC
GGGTCAAGGTCAACAGGGTCACCAGAGTCACCACCCGACGCACCAACCGC
ATCCGACGGCGCAGCCACCACATGGAATCCTGAGGAGTGGCAATTCCCGA
CTCCATCAGGTCTACGATGCGGGACGAGGACACCCTGGAATGACCGGACA
GATTGGCCATTCCGGACAGACGCAAACACTACCAGGAGCATGTCGCAAGC
ATCCGAATGCCGGATCGAACTTAAATCTCTATCTGCATAATGACCTGGAG
AGGCGTTTTTACTTCGAAAAGCCAGCTGTGTCCAAGTGTAATCTGCACTC
GCGCAGCTTCGCCAAGTCGTTGAATGAGCTTTGCACGGATACGTCCGTGT
CCTCCACCCATGTTCCCGCACCCCTTCTCCCTTCCGCTGCCGACCCATTA
CCTGCCCCCGCCCTGTTCGCCGACTTGCCTCAGGAATTTCCACTCACCCG
ATCCGTATCTACGGCCACGGAAATATATCCAGCTTCATCTTCGGCTCCAG
CTCCGCCCTCCGCTCAAATGAAACGAAAGCAACAGCGGAACCTGGC
BO11250.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11566-PA | 1773 | CG11566-RA | 1..774 | 18..791 | 3845 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11566-RA | 3798 | CG11566-RA | 1732..2510 | 18..796 | 3865 | 99.7 | Plus |
| stg1-RA | 3798 | CG33670-RA | 1732..2510 | 18..796 | 3865 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21108783..21109270 | 18..505 | 2440 | 100 | Plus |
| X | 23542271 | X | 21109722..21110013 | 505..796 | 1430 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:05:37 has no hits.
BO11250.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:02 Download gff for
BO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11566-PA | 1..779 | 18..796 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:09 Download gff for
BO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11566-PA | 1..779 | 18..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:05:59 Download gff for
BO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1732..2510 | 18..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:57:12 Download gff for
BO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1732..2510 | 18..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:57:12 Download gff for
BO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21108784..21109270 | 19..505 | 100 | -> | Plus |
| X | 21109723..21110013 | 506..796 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:05:59 Download gff for
BO11250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20979811..20980297 | 19..505 | 100 | -> | Plus |
| arm_X | 20980750..20981040 | 506..796 | 99 | | Plus |
BO11250.complete Sequence
1805 bp assembled on 2008-08-14
GenBank Submission: FJ632041
> BO11250.complete
GAAGTTATCAGTCGGACATGCAAGCGTCGCCGGATGCGTCCTTCGGGATT
AGCTGCATCTTCTGCTGCGCTCTCTGTGTTCTTCACATACTTTATTTCCA
TACGTACATTTCCCTCCAGCGCTTGCCCTGTTTTAGTGTGGCAAACATCC
ACGCCAAGTTAAAGGAGGGCCAGCATCCGTTGAGTGATTCCTACAAGCGG
TACAAGCAGCCCGGCATCACCACAGCCAGCCAGGAAGGACTTAGTAGCGC
GGGTCAAGGTCAACAGGGTCACCAGAGTCACCACCCGACGCACCAACCGC
ATCCGACGGCGCAGCCACCACATGGAATCCTGAGGAGTGGCAATTCCCGA
CTCCATCAGGTCTACGATGCGGGACGAGGACACCCTGGAATGACCGGACA
GATTGGCCATTCCGGACAGACGCAAACACTACCAGGAGCATGTCGCAAGC
ATCCGAATGCCGGATCGAACTTAAATCTCTATCTGCATAATGACCTGGAG
AGGCGTTTTTACTTCGAAAAGCCAGCTGTGTCCAAGTGTAATCTGCACTC
GCGCAGCTTCGCCAAGTCGTTGAATGAGCTTTGCACGGATACGTCCGTGT
CCTCCACCCATGTTCCCGCACCCCTTCTCCCTTCCGCTGCCGACCCATTA
CCTGCCCCCGCCCTGTTCGCCGACTTGCCTCAGGAATTTCCACTCACCCG
ATCCGTATCTACGGCCACGGAAATATATCCAGCTTCATCTTCGGCTCCAG
CTCCGCCCTCCGCTCAAATGAAACGAAAGCAGCAGCGGAACATGGCCACT
AATACGAACACGAAGATCTCCAACAATCCCCCATCCTCCAACTCGCAGAT
GGCAGATCAGTCGCGTCTTTGTGGCCTGAAGCGTGGCCTCCGGAAGACCA
AGGATGAGCTATTCCAGGAGTTCTGTCGGCGAGCTGGTATGCGCAGCAAG
CCAAAGAACATCTACTACATCAGTGGCGGGGATGAGGCGGAGGAGGAGGA
GCAGGAGGATCAGGCCAAGCGGGAGGAAGTTCCGGATGATCCGCATCGCG
ATGACGACGATGACGCGGATGGCGATGACCACGGTTTCAGGCAGTTCAAC
CGCATGGAGGAGGAACATCTCTATGTGGTGGGAGACCATGCCCAATTGGT
GGTGCCGCGTCGCACGTCCATGTGCGTGGACTCCATGGGACAGCCGCTGC
GCAGACTGAACTCGAATCTGTCCCTGCACACGGATCTCAGCTTCCCCGGA
ACGGGTGGCTATCCGGGCATGCGAATGTCCCTGCCACAGCCGGCTGATCT
CGGCCAGAGTCGCACCTTGCCGCGCTGCTTTCTGCGACAGTCGTCCGATT
CGCTGGCTTCCCAGGGCTATCCATTGGGCTCCAGTCAGCAGCGTTTCTCC
CAGCTGATGCTGAATCAGCAGCAGAATCGCTTCGTGTCCTCCACGTTGAC
ACTGCCCCAGGTGGTGGCGCCCAAGAGTCAAGTGCAGTGGCCCACGGCGA
TTCCCTCCTCGCCGTCGAACTACTCGAATGGCTATCAACAGCATCCGCAG
CCCATTTACCCAGCTCCAACATCCGGAAGTGGAGCACCTGGGACAACGGC
TTCGGTCTCCGGACCACCGAAATTCCAGCGCGGCTACGCATTCGACGATC
AACAGCGTAGGTCCAGTTTTGTGAGCGATGCATTCGACCTGGACGAGATC
GAGCGGGAGCGACGGCGATCCCATGCCAGTCTATTTGGAATGGGTCAGGT
GAGGGATCCCTACGATCTCATCAATGGCACCGCCGTCGCAAGCTTTCTAG
ACCAT
BO11250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11566-RA | 1773 | CG11566-PA | 1..1770 | 18..1787 | 8850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11566-RA | 3798 | CG11566-RA | 1732..3501 | 18..1787 | 8850 | 100 | Plus |
| stg1-RA | 3798 | CG33670-RA | 1732..3501 | 18..1787 | 8850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21110466..21111120 | 1133..1787 | 3275 | 100 | Plus |
| X | 23542271 | X | 21109722..21110351 | 505..1134 | 3150 | 100 | Plus |
| X | 23542271 | X | 21108783..21109270 | 18..505 | 2440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:32:13 has no hits.
BO11250.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:50 Download gff for
BO11250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1732..3505 | 18..1792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:50 Download gff for
BO11250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1731..3501 | 17..1789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:16 Download gff for
BO11250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1731..3501 | 17..1789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:21 Download gff for
BO11250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stg1-RA | 1731..3501 | 17..1789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:21 Download gff for
BO11250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21108782..21109270 | 17..505 | 99 | -> | Plus |
| X | 21109723..21110351 | 506..1134 | 100 | -> | Plus |
| X | 21110468..21111120 | 1135..1789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:50 Download gff for
BO11250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20979809..20980297 | 17..505 | 99 | -> | Plus |
| arm_X | 20980750..20981378 | 506..1134 | 100 | -> | Plus |
| arm_X | 20981495..20982147 | 1135..1789 | 99 | | Plus |
BO11250.pep Sequence
Translation from 17 to 1805
> BO11250.pep
MQASPDASFGISCIFCCALCVLHILYFHTYISLQRLPCFSVANIHAKLKE
GQHPLSDSYKRYKQPGITTASQEGLSSAGQGQQGHQSHHPTHQPHPTAQP
PHGILRSGNSRLHQVYDAGRGHPGMTGQIGHSGQTQTLPGACRKHPNAGS
NLNLYLHNDLERRFYFEKPAVSKCNLHSRSFAKSLNELCTDTSVSSTHVP
APLLPSAADPLPAPALFADLPQEFPLTRSVSTATEIYPASSSAPAPPSAQ
MKRKQQRNMATNTNTKISNNPPSSNSQMADQSRLCGLKRGLRKTKDELFQ
EFCRRAGMRSKPKNIYYISGGDEAEEEEQEDQAKREEVPDDPHRDDDDDA
DGDDHGFRQFNRMEEEHLYVVGDHAQLVVPRRTSMCVDSMGQPLRRLNSN
LSLHTDLSFPGTGGYPGMRMSLPQPADLGQSRTLPRCFLRQSSDSLASQG
YPLGSSQQRFSQLMLNQQQNRFVSSTLTLPQVVAPKSQVQWPTAIPSSPS
NYSNGYQQHPQPIYPAPTSGSGAPGTTASVSGPPKFQRGYAFDDQQRRSS
FVSDAFDLDEIERERRRSHASLFGMGQVRDPYDLINGTAVASFLDH
BO11250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11566-PA | 590 | CG11566-PA | 1..590 | 1..590 | 3141 | 100 | Plus |
