Clone BO11253 Report

Search the DGRC for BO11253

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG34360-RB
Protein status:BO11253.pep:
Sequenced Size:1597

Clone Sequence Records

BO11253.3prime Sequence

676 bp (641 high quality bases) assembled on 2006-04-19

> BO11253.3prime
ATGGTCTAGAAAGCTTGCGTCGCCGAAGCGACTGCACGCCTTCTTCCACC
GGCACTGGGTGCACCACTGGTCGCGTTTCTCCATGCCGTACACCTTGCGG
CACTTTTTGTTCTCGCCACGCGTCCTCTTGCCGGGCGAATGGGGCGTATG
CTTGACGGCTACCTGTTGCGCCATGTGCTGTTGCTGCTGCAGCGGATTGC
TTCCGTTGCTGTGGTTGTTACTGTTGTTTTGGGCAACCATGTTGCCGGCA
GTTGTCTGTGGATGCTGCTGCTGGTGGCCGCGCATCGGTTGGTGGTGGTG
CTGCTGCTGCGCCGGATGGAAATTGGGCGTGATCGTCACACTGGACAGGA
GATGTTGCTGCTGCTGTTGGTGGCTGTGTTGCTGCTGCTGCTGGTGGTGT
TGCTGCTGCTGCAGTTGCTGCTGCTGCTGGCTGTGGTGCGCCGTCACTGT
GACGTTCTGCTGCGACAGCTGCTGCAGCATGTTGTTGGCACTGCTATTGC
TGTGGATCACTGGACTGCTGCTGCTGCTGCTGTTGCTGCTGCCGCTGCTG
CCGGCGTAATTGTGGTGGTGCGTGTGTTGGTGGTGCTGCTGTTGCTGGAC
GTACGTCGGCGATGGATATGGCGCTACCGAGTGGGTCGGACGGGAGGACG
ACGAGCGAGCGTGCTTGCCGATCGGC

BO11253.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG33975-PA 1566 CG33975-RA 906..1563 676..19 3290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Glut4EF-RH 10796 CG34360-RH 2560..3217 676..19 3290 100 Minus
Glut4EF-RG 4308 CG34360-RG 2560..3217 676..19 3290 100 Minus
Glut4EF-RA 4308 CG34360-RA 2560..3217 676..19 3290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9987128..9987785 676..19 3290 100 Minus
Blast to na_te.dros performed 2015-02-09 03:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2660 575..239 453 64.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6951 437..207 376 66.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2641 524..176 354 62 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2512 463..257 326 66 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2643..2985 597..251 309 60.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2633 482..163 304 60.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2242..2551 494..196 299 60 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6952 404..163 296 61.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2597..2972 542..166 288 58.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6913 548..163 238 56.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6891 536..176 232 57.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6449..6864 600..176 229 55.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2506 382..176 219 59.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2488 309..164 216 67.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6858 308..164 198 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2494 318..164 175 60 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2425 291..176 173 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1604 309..227 127 67 Minus
roo 9092 roo DM_ROO 9092bp 1054..1154 397..288 124 61.8 Minus
Fw3 3132 Fw3 FW3 3132bp 1206..1253 206..157 119 74 Minus

BO11253.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:07 Download gff for BO11253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33975-PA 906..1566 16..676 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:15 Download gff for BO11253.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33975-PA 906..1566 16..676 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:54:46 Download gff for BO11253.3prime
Subject Subject Range Query Range Percent Splice Strand
Glut4EF-RA 2560..3224 13..676 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:26:33 Download gff for BO11253.3prime
Subject Subject Range Query Range Percent Splice Strand
Glut4EF-RA 2560..3224 13..676 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:26:33 Download gff for BO11253.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9987128..9987792 13..676 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:54:46 Download gff for BO11253.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5812850..5813514 13..676 99   Minus

BO11253.5prime Sequence

851 bp (714 high quality bases) assembled on 2006-04-19

> BO11253.5prime
GAAGTTATCAGTCGACATGAGTGGCGAACGCCGCAGAACCACCACACACA
GTATTGAGGTGCCATCGCAGCTGACGGCGCAGCACAATTCCCGGAAACGT
CCGCCCAGCGATCACCAGGACTACGGCAACTATCTGGAAACATGCCGTGC
CGCCGAGATTCTGTCATCGATGAAGTTGCAGAGTCCGCATGGCTCAATGG
CCGACAAGTGCTCGAGTCCCGGCAGCAGCTCTTCGGCTTCCTGGAGCTCC
GGTTCCCCGTCGCCGCCATTGAGTGACGACGGCCACGCCCACCACAGCCC
ACACAATATCATGTCGCCCCACGATGCGGACAACGCACGCACACGCACAG
CATCCGTGTCCACGTCGGACGAGGGCATTGTCATCGACTACAAGGAGGAG
CGCAAGAAAAAGTCCAAAAAGTTCCGATGCGTCTATCGAGGATGTGTTGG
CGTGGTAGACGATCTCAATGGAGTCGTGCGTCACATTAGGAAAACACATT
TGGGAAAGGACTCCCATCGCTCCGCGGATGATGACGGAAATGAGGAGGAC
TTCTACCTCGAGGATGCCGACGACGACGTCGAGCAGGTGAAGCCCACTCT
GGCCTCCGAGCCGACTCTGAGTCACCGGGACATGGCGCGTCCGCCGCACG
AGGATCCCGAGTACCAGAAGCAGATTGTTGGGAACTTCAAGCAAGGACGC
GGCGGTAGCCACTATAACCATCTAGCGCAGTCGCACGGACGCACCATCAG
TGGCAGCAACATCCCGAGCACCCACCAGCAGCAGCTGCAAAACAACAACA
CCAGCTGCATCCCCACTTCGCACCTAGCCCACCACAACTACCACATGCCC
G

BO11253.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG33975-PA 1566 CG33975-RA 1..825 17..841 4075 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Glut4EF-RH 10796 CG34360-RH 1651..2488 13..851 4140 99.6 Plus
Glut4EF-RG 4308 CG34360-RG 1651..2488 13..851 4140 99.6 Plus
Glut4EF-RA 4308 CG34360-RA 1651..2488 13..851 4140 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9943677..9943894 195..412 1090 100 Plus
3R 32079331 3R 9986647..9986834 504..691 925 99.5 Plus
3R 32079331 3R 9986897..9987047 691..841 740 99.3 Plus
3R 32079331 3R 9943481..9943587 88..194 535 100 Plus
3R 32079331 3R 9982277..9982370 411..504 470 100 Plus
3R 32079331 3R 9930471..9930545 13..87 375 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:47:26 has no hits.

BO11253.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:08 Download gff for BO11253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33975-PA 1..834 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:17 Download gff for BO11253.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33975-PA 1..834 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:22:41 Download gff for BO11253.5prime
Subject Subject Range Query Range Percent Splice Strand
Glut4EF-RA 1647..2488 8..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:10 Download gff for BO11253.5prime
Subject Subject Range Query Range Percent Splice Strand
Glut4EF-RA 1647..2488 8..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:10 Download gff for BO11253.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9986897..9987056 691..851 98   Plus
3R 9930467..9930545 8..87 97 -> Plus
3R 9943481..9943587 88..194 100 -> Plus
3R 9943677..9943894 195..412 100 -> Plus
3R 9982279..9982370 413..504 100 -> Plus
3R 9986648..9986833 505..690 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:22:41 Download gff for BO11253.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5812619..5812778 691..851 98   Plus
arm_3R 5756189..5756267 8..87 97 -> Plus
arm_3R 5769203..5769309 88..194 100 -> Plus
arm_3R 5769399..5769616 195..412 100 -> Plus
arm_3R 5808001..5808092 413..504 100 -> Plus
arm_3R 5812370..5812555 505..690 99 -> Plus

BO11253.complete Sequence

1597 bp assembled on 2008-01-16

GenBank Submission: FJ632042

> BO11253.complete
GAAGTTATCAGTCGACATGAGTGGCGAACGCCGCAGAACCACCACACACA
GTATTGAGGTGCCATCGCAGCTGACGGCGCAGCACAATTCCCGGAAACGT
CCGCCCAGCGATCACCAGGACTACGGCAACTATCTGGAAACATGCCGTGC
CGCCGAGATTCTGTCATCGATGAAGTTGCAGAGTCCGCATGGCTCAATGG
CCGACAAGTGCTCGAGTCCCGGCAGCAGCTCTTCGGCTTCCTGGAGCTCC
GGTTCCCCGTCGCCGCCATTGAGTGACGACGGCCACGCCCACCACAGCCC
ACACAATATCATGTCGCCCCACGATGCGGACAACGCACGCACACGCACAG
CATCCGTGTCCACGTCGGACGAGGGCATTGTCATCGACTACAAGGAGGAG
CGCAAGAAAAAGTCCAAAAAGTTCCGATGCGTCTATCGAGGATGTGTTGG
CGTGGTAGACGATCTCAATGGAGTCGTGCGTCACATTAGGAAAACACATT
TGGGAAAGGACTCCCATCGCTCCGCGGATGATGACGGAAATGAGGAGGAC
TTCTACCTCGAGGATGCCGACGACGACGTCGAGCAGGTGAAGCCCACTCT
GGCCTCCGAGCCGACTCTGAGTCACCGGGACATGGCGCGTCCGCCGCACG
AGGATCCCGAGTACCAGAAGCAGATTGTTGGCAACTTCAAGCAAGGACGC
GGCGGTAGCCACTATAACCATCTAGCGCAGTCGCACGGACGCACCATCAG
TGGCAGCAACATCCCGAGCACCCACCAGCAGCAGCTGCAGAACAACAACA
CCAGCTGCATCCCCACTTCGCACCTAGCCCACCACAACTACACATGCCCG
GCGGCGACGGCGACAGTGGGCAGCTACTCCTCCACGGGGACGGGGTCGGT
GGCGGCCAGTTCATCAGCCTCGCCGATCGGCAAGCACGCTCGCTCGTCGT
CCTCCCGTCCGACCCACTCGGTAGCGCCATATCCATCGCCGACGTACGTC
CAGCAACAGCAGCACCACCAACACACGCACCACCACAATTACGCCGGCAG
CAGCGGCAGCAGCAACAGCAGCAGCAGCAGCAGTCCAGTGATCCACAGCA
ATAGCAGTGCCAACAACATGCTGCAGCAGCTGTCGCAGCAGAACGTCACA
GTGACGGCGCACCACAGCCAGCAGCAGCAGCAACTGCAGCAGCAGCAACA
CCACCAGCAGCAGCAGCAACACAGCCACCAACAGCAGCAGCAACATCTCC
TGTCCAGTGTGACGATCACGCCCAATTTCCATCCGGCGCAGCAGCAGCAC
CACCACCAACCGATGCGCGGCCACCAGCAGCAGCATCCACAGACAACTGC
CGGCAACATGGTTGCCCAAAACAACAGTAACAACCACAGCAACGGAAGCA
ATCCGCTGCAGCAGCAACAGCACATGGCGCAACAGGTAGCCGTCAAGCAT
ACGCCCCATTCGCCCGGCAAGAGGACGCGTGGCGAGAACAAAAAGTGCCG
CAAGGTGTACGGCATGGAGAAACGCGACCAGTGGTGCACCCAGTGCCGGT
GGAAGAAGGCGTGCAGTCGCTTCGGCGACGCAAGCTTTCTAGACCAT

BO11253.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Glut4EF-RH 2226 CG34360-PH 657..2223 13..1579 7835 100 Plus
Glut4EF-RG 2853 CG34360-PG 657..2223 13..1579 7835 100 Plus
Glut4EF-RA 2226 CG34360-PA 657..2223 13..1579 7835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
Glut4EF-RH 10796 CG34360-RH 1651..3217 13..1579 7835 100 Plus
Glut4EF-RG 4308 CG34360-RG 1651..3217 13..1579 7835 100 Plus
Glut4EF-RA 4308 CG34360-RA 1651..3217 13..1579 7835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9986897..9987785 691..1579 4445 100 Plus
3R 32079331 3R 9943677..9943894 195..412 1090 100 Plus
3R 32079331 3R 9986647..9986834 504..691 940 100 Plus
3R 32079331 3R 9943481..9943587 88..194 535 100 Plus
3R 32079331 3R 9982277..9982370 411..504 470 100 Plus
3R 32079331 3R 9930471..9930545 13..87 375 100 Plus
Blast to na_te.dros performed 2014-11-27 14:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2660 1023..1359 453 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6951 1161..1391 376 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2276..2985 651..1347 376 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2641 1074..1422 354 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2512 1135..1341 326 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2633 1116..1435 304 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2972 756..1432 301 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2242..2551 1104..1402 299 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6952 1194..1435 296 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6913 1050..1435 238 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6891 1062..1422 232 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6449..6864 998..1422 229 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2506 1216..1422 219 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2488 1289..1434 216 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2494 1280..1434 175 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2425 1307..1422 173 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1604 1289..1371 127 67 Plus
Fw3 3132 Fw3 FW3 3132bp 1206..1253 1392..1441 119 74 Plus

BO11253.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:59 Download gff for BO11253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34360-RA 653..2226 8..1582 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:46 Download gff for BO11253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34360-RB 922..2484 17..1581 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:44 Download gff for BO11253.complete
Subject Subject Range Query Range Percent Splice Strand
Glut4EF-RA 1655..3217 17..1581 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:59 Download gff for BO11253.complete
Subject Subject Range Query Range Percent Splice Strand
CG34360-RB 914..2491 8..1585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:45 Download gff for BO11253.complete
Subject Subject Range Query Range Percent Splice Strand
Glut4EF-RA 1655..3217 17..1581 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:45 Download gff for BO11253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9930475..9930545 17..87 100 -> Plus
3R 9943481..9943587 88..194 100 -> Plus
3R 9943677..9943894 195..412 100 -> Plus
3R 9982279..9982370 413..504 100 -> Plus
3R 9986648..9986833 505..690 100 -> Plus
3R 9986897..9987785 691..1581 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:44 Download gff for BO11253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5756197..5756267 17..87 100 -> Plus
arm_3R 5769203..5769309 88..194 100 -> Plus
arm_3R 5769399..5769616 195..412 100 -> Plus
arm_3R 5808001..5808092 413..504 100 -> Plus
arm_3R 5812370..5812555 505..690 100 -> Plus
arm_3R 5812619..5813507 691..1581 99   Plus

BO11253.pep Sequence

Translation from 16 to 1597

> BO11253.pep
MSGERRRTTTHSIEVPSQLTAQHNSRKRPPSDHQDYGNYLETCRAAEILS
SMKLQSPHGSMADKCSSPGSSSSASWSSGSPSPPLSDDGHAHHSPHNIMS
PHDADNARTRTASVSTSDEGIVIDYKEERKKKSKKFRCVYRGCVGVVDDL
NGVVRHIRKTHLGKDSHRSADDDGNEEDFYLEDADDDVEQVKPTLASEPT
LSHRDMARPPHEDPEYQKQIVGNFKQGRGGSHYNHLAQSHGRTISGSNIP
STHQQQLQNNNTSCIPTSHLAHHNYTCPAATATVGSYSSTGTGSVAASSS
ASPIGKHARSSSSRPTHSVAPYPSPTYVQQQQHHQHTHHHNYAGSSGSSN
SSSSSSPVIHSNSSANNMLQQLSQQNVTVTAHHSQQQQQLQQQQHHQQQQ
QHSHQQQQQHLLSSVTITPNFHPAQQQHHHQPMRGHQQQHPQTTAGNMVA
QNNSNNHSNGSNPLQQQQHMAQQVAVKHTPHSPGKRTRGENKKCRKVYGM
EKRDQWCTQCRWKKACSRFGDASFLDH

BO11253.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Glut4EF-PH 741 CG34360-PH 221..741 1..521 2817 100 Plus
Glut4EF-PG 950 CG34360-PG 221..741 1..521 2817 100 Plus
Glut4EF-PA 741 CG34360-PA 221..741 1..521 2817 100 Plus
Glut4EF-PF 521 CG34360-PF 1..521 1..521 2817 100 Plus
Glut4EF-PB 521 CG34360-PB 1..521 1..521 2817 100 Plus