Clone Sequence Records
BO11254.3prime Sequence
753 bp (673 high quality bases) assembled on 2006-04-19
> BO11254.3prime
ATGGTCTAGAAAGCTTGCGAGCTTCGATTCGCTTGTCTTCTGGGGGAACT
GCGGATGTCCCTCTTCCTGTTGCGGACTCGCCAGTGTCTTGATGATCTTG
GGCACTATGGTGATCGGCTGATCCTCGTCGTCCTCGGCATCTTCGCCCTG
CTCCTCGTCGATGGGTGTGAGCGTTTCCACATGCACAGGAGTCTCCTCCG
AGGGACTGCATCTCTTCAAGCAGGGCGCCAGGAAACTGGTTATCGTGGAG
ATGCCGAACAACGCACCGGCCATGTAAAAGGGCAGGTCGTAGGTGTGCGT
CATGTCGTAGATGGCTCCCGCCAAGGGCGTTCCGATCAGGGCGGCAAATC
CTCTGAACAGGATCAGCAGTCCGAAGGCATTTGTTAGCTTGTCCAGGCCG
AGGAGGTCGACCAGGATAATTGACGTCAGCGAGATGTAGCCCGAGATGGC
CAGTCCGAAGAATATGGACATGGTTATGTAGGCCGCGTAGCTGTAGCACA
ATGGGGTCAAAGTCACGGCTATGGTGGACACCAGCAGGCAGCAGTTGTTG
AGCAGTAGCGAGTTCACTTGCGGCAGGTCCGCTACCCAGCCGCAGAAGAC
ACGGCCCACGGTGTTGGTGATGCCAATGATGGACAGAAGCATGGCTGCAT
CGTTCTTTGGTATGTCGTGTTCCTTGGCCGCATCCACCAGGTAGACGAAG
GGCACGTACAGTCCGGCCATGCCAAAAATATTCGAGACTCCGATAAGCAT
GAA
BO11254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13907-PA | 2451 | CG13907-RA | 1714..2448 | 753..19 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13907-RB | 3755 | CG13907-RB | 1856..2590 | 753..19 | 3675 | 100 | Minus |
| CG13907-RA | 4723 | CG13907-RA | 2824..3558 | 753..19 | 3675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 878456..879190 | 19..753 | 3675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:11:45 has no hits.
BO11254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:09 Download gff for
BO11254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-PA | 1716..2451 | 15..751 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:18 Download gff for
BO11254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-PA | 1716..2451 | 15..751 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:50:55 Download gff for
BO11254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-RA | 2824..3562 | 14..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:42 Download gff for
BO11254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-RA | 2824..3562 | 14..753 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:42 Download gff for
BO11254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 878452..879190 | 14..753 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:50:55 Download gff for
BO11254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 878452..879190 | 14..753 | 99 | | Plus |
BO11254.5prime Sequence
797 bp (712 high quality bases) assembled on 2006-04-19
> BO11254.5prime
GAAGTTATCAGTCGACATGGTGGATACAAACAGTTCAAATCCGGGAATCG
TGGGTGGAAACTCCGCCTCGTCCGCCAGGCTGAGGAGATTCGAGCGGACG
GACAGTGAGCTGGCCTGCGAGGAGGCGGCCAGGCTGACGGCGGAACAGAG
TCCGGAGGACGAGGACAATCAGGACAACGACGAGGATGACGACGACGAGG
AGAGCGTGTACGGGGAACTGCCGCCTCCGCCGGACGGAGGATACGGCTGG
GTCATCTGCTTCGCCAGCTTCATGTGCAACATGATCGTGGACGGTATCGC
CTACACGTTCGGCATCTTCCTGGAGGAGTTCGTGGCCTACTTCCACGAGG
GCAAGGGTACGGTGGCCTGGGTGGGCAGTCTTCTGTCAGGAGTCTACCTC
AGCGCCGGACCTATCGTTTCCGCCCTGGCCAACAAGTACGGATGCCGAGC
CGTCTGCATAGCCGGGAGCATAATCGCCTGCATAGCCTTCGTCTTGAGTA
CGTTCAGTACCAACGTGAGCATGCTGATGGCCACCTATGGCTTCATGGGG
GGATTCGGGTTCGGCATGATTTATCTGCCTGCTGTAGTGGCCGTGGGCTA
TTACTTTGAAACCAAGCGGAGTCTGGCCACAGGAATTGCGGTCTGCGGCT
CTGGCTTTGGCACCTTCGCCTTTGCCCCGCTGGCCACCTATCTCCTGGAG
GAGTACGGCTGGAAAAACGCCCTGCTCATCTTTGCTGGCCTGATCCTCAA
CTGCGCCATCTTCGGAGCCATGATGCGGCCACTGACCTACCCGAAAA
BO11254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13907-PA | 2451 | CG13907-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13907-RB | 3755 | CG13907-RB | 141..923 | 15..797 | 3915 | 100 | Plus |
| CG13907-RA | 4723 | CG13907-RA | 1109..1891 | 15..797 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 880123..880905 | 797..15 | 3915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:24:47 has no hits.
BO11254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:10 Download gff for
BO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:19 Download gff for
BO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:31:49 Download gff for
BO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-RA | 1109..1887 | 15..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:35 Download gff for
BO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-RA | 1109..1887 | 15..793 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:35 Download gff for
BO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 880127..880905 | 15..793 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:31:49 Download gff for
BO11254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 880127..880905 | 15..793 | 100 | | Minus |
BO11254.complete Sequence
2482 bp assembled on 2008-01-16
GenBank Submission: FJ632043
> BO11254.complete
GAAGTTATCAGTCGACATGGTGGATACAAACAGTTCAAATCCGGGAATCG
TGGGTGGAAACTCCGCCTCGTCCGCCAGGCTGAGGAGATTCGAGCGGACG
GACAGTGAGCTGGCCTGCGAGGAGGCGGCCAGGCTGACGGCGGAACAGAG
TCCGGAGGACGAGGACAATCAGGACAACGACGAGGATGACGACGACGAGG
AGAGCGTGTACGGGGAACTGCCGCCTCCGCCGGACGGAGGATACGGCTGG
GTCATCTGCTTCGCCAGCTTCATGTGCAACATGATCGTGGACGGTATCGC
CTACACGTTCGGCATCTTCCTGGAGGAGTTCGTGGCCTACTTCCACGAGG
GCAAGGGTACGGTGGCCTGGGTGGGCAGTCTTCTGTCAGGAGTCTACCTC
AGCGCCGGACCTATCGTTTCCGCCCTGGCCAACAAGTACGGATGCCGAGC
CGTCTGCATAGCCGGGAGCATAATCGCCTGCATAGCCTTCGTCTTGAGTA
CGTTCAGTACCAACGTGAGCATGCTGATGGCCACCTATGGCTTCATGGGG
GGATTCGGGTTCGGCATGATTTATCTGCCTGCTGTAGTGGCCGTGGGCTA
TTACTTTGAAACCAAGCGGAGTCTGGCCACAGGAATTGCGGTCTGCGGCT
CTGGCTTTGGCACCTTCGCCTTTGCCCCGCTGGCCACCTATCTCCTGGAG
GAGTACGGCTGGAAAAACGCCCTGCTCATCTTTGCTGGCCTGATCCTCAA
CTGCGCCATCTTCGGAGCCATGATGCGGCCACTGACCTACCCGAAAAAGA
AGAAGCAGAAGCCCTTGATGCAAAGGATGTACGAGGAGAAGCAGCTGCAG
CTGGAAAGGGGTTCCTTTGCGGGCTCCCACTTCATGGTGCAGTTACCGGA
TGGAACCATCGAGCGGAAACTGAAGATGCCGCTCAATGCGGATCCCGGTG
TGCATTCCAGCTTGAATCTGGAGCTGCTGGCCCAACAGGCAGGCGGCGGA
GGTCTGCATCCCGTCTCTACCCTGCCCACCATCACGGAGTCCAAAGTGGT
GGATGTTCATCGACAGAACGGCGCGCAATCTCCACCAAATGGCGACAGCA
ATGGCCAGTTATCCGCTCGATCCGCCGCAGGTGCCGTCGGCCGCCGTCCT
CACAGGAACTCGGAGTCGGAGAATAGTCCGTACCACTCGCAGGATGCCAT
GACCCGGAACGCATCGCAGCCCGCCTTCCTGGCCGGAGATCATCAGAGTT
TGCCCAAAAACGGATCCGTGCCGGCATTCAACACGCGAGTTAGGAAAACC
TCCGCCTCGGAGCGCTTCCAGCCTTCGCTGGCCGCCATCAGGGCCACTTC
TCGCGGAGATTTGGAGGCAGGAGCAGGCGGTGACTTCGCCTCCTCGAAGT
TGTCGCTTTCACAACGGCAGGGCGGCAGTCAAACTGGAAGCAGCGGCAGG
ATGGTGCGACCCATGTCCCGCAAGGATATCTTCTACTCGGGATCCGTGAC
GAACCTGCCGCAATATCAGTCCCAGAAGTCCTTGGCCAACTACAGGAATT
CGGTGCTGTCGCTAACCAAGTACGAGAAGAGCATGCAGAGTGTGGCTAAA
TTGGATCCCTTGGCCGAGGCTGAGAAGCATCGCGAGGAGTATGACCTGTG
TCCCTGCCTTGGCATTCCCGATTCCGTGAAGTCCGTGGTTAACACCATGT
TGGATGTTAGCCTTCTGAAGGATCCCGTCTTCATGCTTATCGGAGTCTCG
AATATTTTTGGCATGGCCGGACTGTACGTGCCCTTCGTCTACCTGGTGGA
TGCGGCCAAGGAACACGACATACCAAAGAACGATGCAGCCATGCTTCTGT
CCATCATTGGCATCACCAACACCGTGGGCCGTGTCTTCTGCGGCTGGGTA
GCGGACCTGCCGCAAGTGAACTCGCTACTGCTCAACAACTGCTGCCTGCT
GGTGTCCACCATAGCCGTGACTTTGACCCCATTGTGCTACAGCTACGCGG
CCTACATAACCATGTCCATATTCTTCGGACTGGCCATCTCGGGCTACATC
TCGCTGACGTCAATTATCCTGGTCGACCTCCTCGGCCTGGACAAGCTAAC
AAATGCCTTCGGACTGCTGATCCTGTTCAGAGGATTTGCCGCCCTGATCG
GAACGCCCTTGGCGGGAGCCATCTACGACATGACGCACACCTACGACCTG
CCCTTTTACATGGCCGGTGCGTTGTTCGGCATCTCCACGATAACCAGTTT
CCTGGCGCCCTGCTTGAAGAGATGCAGTCCCTCGGAGGAGACTCCTGTGC
ATGTGGAAACGCTCACACCCATCGACGAGGAGCAGGGCGAAGATGCCGAG
GACGACGAGGATCAGCCGATCACCATAGTGCCCAAGATCATCAAGACACT
GGCGAGTCCGCAACAGGAAGAGGGACATCCGCAGTTCCCCCAGAAGACAA
GCGAATCGAAGCTCGCAAGCTTTCTAGACCAT
BO11254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13907-RB | 2451 | CG13907-PB | 1..2448 | 17..2464 | 12240 | 100 | Plus |
| CG13907-RA | 2451 | CG13907-PA | 1..2448 | 17..2464 | 12240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13907-RB | 3755 | CG13907-RB | 141..2590 | 15..2464 | 12250 | 100 | Plus |
| CG13907-RA | 4723 | CG13907-RA | 1109..3558 | 15..2464 | 12250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 878456..880905 | 2464..15 | 12250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:48:47 has no hits.
BO11254.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:00 Download gff for
BO11254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-RA | 1..2451 | 17..2468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:08 Download gff for
BO11254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-RA | 971..3418 | 17..2466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:05 Download gff for
BO11254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-RA | 1111..3558 | 17..2466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:00 Download gff for
BO11254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-RA | 969..3422 | 15..2469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:00 Download gff for
BO11254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13907-RA | 1111..3558 | 17..2466 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:00 Download gff for
BO11254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 878454..880903 | 17..2466 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:05 Download gff for
BO11254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 878454..880903 | 17..2466 | 99 | | Minus |
BO11254.pep Sequence
Translation from 16 to 2482
> BO11254.pep
MVDTNSSNPGIVGGNSASSARLRRFERTDSELACEEAARLTAEQSPEDED
NQDNDEDDDDEESVYGELPPPPDGGYGWVICFASFMCNMIVDGIAYTFGI
FLEEFVAYFHEGKGTVAWVGSLLSGVYLSAGPIVSALANKYGCRAVCIAG
SIIACIAFVLSTFSTNVSMLMATYGFMGGFGFGMIYLPAVVAVGYYFETK
RSLATGIAVCGSGFGTFAFAPLATYLLEEYGWKNALLIFAGLILNCAIFG
AMMRPLTYPKKKKQKPLMQRMYEEKQLQLERGSFAGSHFMVQLPDGTIER
KLKMPLNADPGVHSSLNLELLAQQAGGGGLHPVSTLPTITESKVVDVHRQ
NGAQSPPNGDSNGQLSARSAAGAVGRRPHRNSESENSPYHSQDAMTRNAS
QPAFLAGDHQSLPKNGSVPAFNTRVRKTSASERFQPSLAAIRATSRGDLE
AGAGGDFASSKLSLSQRQGGSQTGSSGRMVRPMSRKDIFYSGSVTNLPQY
QSQKSLANYRNSVLSLTKYEKSMQSVAKLDPLAEAEKHREEYDLCPCLGI
PDSVKSVVNTMLDVSLLKDPVFMLIGVSNIFGMAGLYVPFVYLVDAAKEH
DIPKNDAAMLLSIIGITNTVGRVFCGWVADLPQVNSLLLNNCCLLVSTIA
VTLTPLCYSYAAYITMSIFFGLAISGYISLTSIILVDLLGLDKLTNAFGL
LILFRGFAALIGTPLAGAIYDMTHTYDLPFYMAGALFGISTITSFLAPCL
KRCSPSEETPVHVETLTPIDEEQGEDAEDDEDQPITIVPKIIKTLASPQQ
EEGHPQFPQKTSESKLASFLDH
BO11254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13907-PB | 816 | CG13907-PB | 1..816 | 1..816 | 4212 | 100 | Plus |
| CG13907-PA | 816 | CG13907-PA | 1..816 | 1..816 | 4212 | 100 | Plus |
| CG8468-PB | 678 | CG8468-PB | 11..675 | 35..769 | 973 | 34.9 | Plus |
| CG8468-PA | 678 | CG8468-PA | 11..675 | 35..769 | 973 | 34.9 | Plus |
| CG8468-PC | 678 | CG8468-PC | 11..675 | 35..769 | 973 | 34.9 | Plus |
