Clone Sequence Records
BO11255.3prime Sequence
756 bp (753 high quality bases) assembled on 2006-04-19
> BO11255.3prime
ATGGTCTAGAAAGCTTGCCAGCATGCCGAAGCCCTTCGAGTAGTTGATGG
CCTTCATCAGGCGCTCCTCCAGCTTCTCGCGGCTGCTGTACTCGGGCAGG
AGGAGAACGTTGAAGCAGGTGTGCGAGGTAGGCAACCGATCGCTATCCGG
ACCGTGACGCGTGATTAGCAGACGCAGGCATTTCAGGCCGCCAACCGGAA
CACGCGCCGATCCCGTCGTGAATTCGAGCAGCTTGTGCTTGTCCTCGCTG
GGCATCGCATGCACTATGCTCCAGAAGTCCTGGATGTACTGGCTCTTCTC
CGTGTAGCCGCCCTCGTACACAGTGGAGTTTTCCAGTTCCACAAAGTCGA
ATTCACGACTGCCGCAGACCAGCATTTCAATCTCCTCTGGACGGAAGAGC
AGCTTCAGTGGCGATTCGTCCGTAACCATTTCGAAGCCCTTGCGGAAAGC
ATTGAACTGCTGTTCGATATTCGTGTTAAGCAGGAAATCACTGTACAGGT
TGACAAACAGTTCCTTGTTGTGCTGCCCCACCAGTACATCCTGGCCGTTC
GGCACCAGTTCGTGTTGTACCACATCACCGAAAACATCGCTATAGCTAAT
CTTGAAGGTCTGTTCGAATACCTCCTCCATATCCTGGCCCTGATAGTCCA
GCATGGACTTCAGACTCTTGTACAGCGCCGGACTCCAGTCGCTGAGGTCT
GCGAACGTGCCGCAATAGCCTATCAACTTGCGATAGACCACCATGGGGAA
GTTTAC
BO11255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6190-PA | 2922 | As-RA | 2182..2919 | 756..19 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ube3a-RA | 3674 | CG6190-RA | 2559..3296 | 756..19 | 3690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11207197..11207599 | 354..756 | 2015 | 100 | Plus |
| 3L | 28110227 | 3L | 11206800..11207135 | 19..354 | 1680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:00:31 has no hits.
BO11255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:02:11 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:21 Download gff for
BO11255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6190-PA | 2182..2922 | 18..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:51:45 Download gff for
BO11255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ube3a-RA | 2559..3296 | 19..756 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:24:30 Download gff for
BO11255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ube3a-RA | 2559..3296 | 19..756 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:24:30 Download gff for
BO11255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11206800..11207135 | 19..354 | 100 | <- | Plus |
| 3L | 11207198..11207599 | 355..756 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:51:45 Download gff for
BO11255.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11199900..11200235 | 19..354 | 100 | <- | Plus |
| arm_3L | 11200298..11200699 | 355..756 | 100 | | Plus |
BO11255.5prime Sequence
811 bp (709 high quality bases) assembled on 2006-04-19
> BO11255.5prime
GAAGTTATCAGTCGACATGAACGGTGGCGGGGGTGGCGAGGATGATCAGC
ATCTGCCAGGTGTTTCCAGTGCATCAGGATCTGCAGCTGGAGCGGTGGGC
GGGCGAGCCACGCCCGAAATGAAGCGTTCGGCGGTGCGCAGCCTAATCAA
GCGATACTTCCACCAACTACAATCCGGCTGTGGGAACGCCAACTGCAGCA
ATGCCAATTGCGCCTCCAGCGGCAAGGTGGCGCCCATGACGCCCAACGAG
GTGGCCGCCAGAGCACTGCAGCTCTTTTCACAGGATGCACAGCTCTGCGA
GGCGTTCACATCGGAGGCCAACAGCCCCCAGGACGTGGACATGCTTTCGC
CGAACGACAGTAGCAGTAGTAGCAGCGGCAGCTCGACAAGCACAATTACC
TCAGCCAGTACCACCACGACAACCAGCAGACAATCGCAGTCAACGCCAGC
TGCCGTTGTAGTGCCCGTATCCAGTCCATATCTTACCCAGAGTGTGCCGC
AACTGGATATCGCCGGCGCTGAACACTCCTCCGGCGACTCGGAACCGTGT
ACACCCACCCTGGCGCCAGTCCACAGCTTGGATGCCAACAGTCTGATAGC
GCTCTATGAGCAATGTAGGGCGGCTGACAGTTACGACAGGATTTGCCACG
CAATCGGCGTTGTGTTCTCCAGCGTAGATAGACTGGGCAAGAGCTTCATT
CGCAGCGCAGAACCAGCGGCTTCTAGTAGTCTCCAGGAGCTGCTGGCCAA
TTCACCGGGGGCTTTAAACAAAGAGCAGCTACGAACTTTGGAAGGGGAAC
ACGATAAAGAC
BO11255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6190-PA | 2922 | As-RA | 1..795 | 17..811 | 3950 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ube3a-RA | 3674 | CG6190-RA | 378..1172 | 17..811 | 3960 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11209245..11209733 | 811..323 | 2430 | 99.8 | Minus |
| 3L | 28110227 | 3L | 11209836..11210093 | 324..67 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 11210154..11210206 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:00:30 has no hits.
BO11255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:02:12 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:22 Download gff for
BO11255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6190-PA | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:04:47 Download gff for
BO11255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ube3a-RA | 367..1172 | 5..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:26 Download gff for
BO11255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ube3a-RA | 367..1172 | 5..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:26 Download gff for
BO11255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11209245..11209731 | 325..811 | 99 | <- | Minus |
| 3L | 11209836..11210090 | 70..324 | 100 | <- | Minus |
| 3L | 11210154..11210217 | 5..69 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:04:47 Download gff for
BO11255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11202345..11202831 | 325..811 | 99 | <- | Minus |
| arm_3L | 11202936..11203190 | 70..324 | 100 | <- | Minus |
| arm_3L | 11203254..11203317 | 5..69 | 93 | | Minus |
BO11255.complete Sequence
2953 bp assembled on 2008-01-16
GenBank Submission: FJ632044
> BO11255.complete
GAAGTTATCAGTCGACATGAACGGTGGCGGGGGTGGCGAGGATGATCAGC
ATCTGCCAGGTGTTTCCAGTGCATCAGGATCTGCAGCTGGAGCGGTGGGC
GGGCGAGCCACGCCCGAAATGAAGCGTTCGGCGGTGCGCAGCCTAATCAA
GCGATACTTCCACCAACTACAATCCGGCTGTGGGAACGCCAACTGCAGCA
ATGCCAATTGCGCCTCCAGCGGCAAGGTGGCGCCCATGACGCCCAACGAG
GTGGCCGCCAGAGCACTGCAGCTCTTTTCACAGGATGCACAGCTCTGCGA
GGCGTTCACATCGGAGGCCAACAGCCCCCAGGACGTGGACATGCTTTCGC
CGAACGACAGTAGCAGTAGTAGCAGCGGCAGCTCGACAAGCACAATTACC
TCAGCCAGTACCACCACGACAACCAGCAGACAATCGCAGTCAACGCCAGC
TGCCGTTGTAGTGCCCGTATCCAGTCCATATCTTACCCAGAGTGTGCCGC
AACTGGATATCGCCGGCGCTGAACACTCCTCCGGCGACTCGGAACCGTGT
ACACCCACCCTGGCGCCAGTCCACAGCTTGGATGCCAACAGTCTGATAGC
GCTCTATGAGCAATGTAGGGCGGCTGACAGTTACGACAGGATTTGCCACG
CAATCGGCGTTGTGTTCTCCAGCGTAGATAGACTGGGCAAGAGCTTCATT
CGCAGCGCAGAACCAGCGGCTTCTAGTAGTCTCCAGGAGCTGCTGGCCAA
TTCACCGGGGGCTTTAAACAAGGAGCAGCTACGAACTTTGGAAGGGGAAC
ACGATAAAGACGAAGACAGTACACAACAGGTGGACGAACAATCAGAATCG
GCGGCTAATGCTACTGCTACTGCAGAATCAGTCGAATCAGAGGCGGAGCC
CGAAGAAGAGGACGATGATGTGTGTTCATCCCAAAGCAGCGACACACTGG
TGGATCTGCCCGGTTTGCGACGAGTGCAGCGTCTCCTTTTTGGCTGTCAA
ATACGAGCTATAACGGAGAAGCTTACCAGCAGCGTTATTCAGCTGTCTGA
CTGGGTGATTTACATGCGTACGGATTGGGAGAGGGTCATTCACTGTCTGG
TCATCTGCTTTGATCTAGCCACCAATACCAATAACAGTGTGGTGGACATG
GACTATCTGGACAGGGTGCTGCCAAAATTGTGCCAAGCGGCGTCGGCCAT
GCCAGTGCCGGCACAGGCGCGCCTGGCCAGGATCTGGGCTGCTCATTGTT
CAGATCAGCTGCATTCGTTGATCGCAGCCTGCCAGCAGCAAATTACTCTA
CAGGTGCTTTTGGACGAGGAATCCATGCGCGAGAACGAATCCATAATCAG
TGTCACCAAAGTTTTAAAGATTGTCTTCTACGCGAACATTCTGGCTAGCG
AGCTGGAGCGACCGTCGTGTCGGGTGCCGCTGGAGGATCGAACGGAAGCG
GCGACCGCATCTGGCAGCGCAGCAGTGGAGGACGACCTATTCGTCTACAA
CTCTTTGTTGGAGCCGCACATGCCCAAATTCGCCGAGGATCAGTTTGAAA
AGGAGCTGCAGGTGTCGGCAATCGATTGCCGGAAACCACTGATACCACTT
GAGGAGTTCTACAACGAGGCACTCAGTGAAAACATTCAGATGCACCACGA
CTACCTGTCCTACAAGACGTTAGCCATGGAGAGCGAGATTGGTTCCGGCC
ACGCGAACTATTTTTCGTTCATGCTGTACGCCTTTATCCTCACGCCGTCA
ACAAAAGTGGATGCCTTGTACTATGACAGTCGAATGAGGATGTATAGCGA
GCGCTACTCCTCCCTTCACTCCATCCTCAACAATATTGGCCAGGTAGGAC
AGGAAGATAATCCTCGGCCGGATCTTAAGCTGACGGTGCGAAGGGACCAG
CTCATCAACGACGCACTTATTGGGCTGGAAATGGTGGCCATGAGCAATCC
AAAGGATCTCAAGAAGCAGTTGGTGGTGGAGTTTGTCGGCGAGCAGGGGA
TCGATGAAGGCGGCGTATCCAAAGAGTTCTTCCAGCTAATCGTGGAGGAG
ATATTTAACCCGGCTTTTGGAATGTTTATACAGCAAGAGGAGACCAACAA
TATGTGGTTCAATGCCACACCATTTGAGAACGGAGCGCAATTCACTCTGA
TTGGTATAATTATTGGCCTGGCGATCTATAACAACGTCACCCTGGCCGTA
AACTTCCCCATGGTGGTCTATCGCAAGTTGATAGGCTATTGCGGCACGTT
CGCAGACCTCAGCGACTGGAGTCCGGCGCTGTACAAGAGTCTGAAGTCCA
TGCTGGACTATCAGGGCCAGGATATGGAGGAGGTATTCGAACAGACCTTC
AAGATTAGCTATAGCGATGTTTTCGGTGATGTGGTACAACACGAACTGGT
GCCGAACGGCCAGGATGTACTGGTGGGGCAGCACAACAAGGAACTGTTTG
TCAACCTGTACAGTGATTTCCTGCTTAACACGAATATCGAACAGCAGTTC
AATGCTTTCCGCAAGGGCTTCGAAATGGTTACGGACGAATCGCCACTGAA
GCTGCTCTTCCGTCCAGAGGAGATTGAAATGCTGGTCTGCGGCAGTCGTG
AATTCGACTTTGTGGAACTGGAAAACTCCACTGTGTACGAGGGCGGCTAC
ACGGAGAAGAGCCAGTACATCCAGGACTTCTGGAGCATAGTGCATGCGAT
GCCCAGCGAGGACAAGCACAAGCTGCTCGAATTCACGACGGGATCGGCGC
GTGTTCCGGTTGGCGGCCTGAAATGCCTGCGTCTGCTAATCACGCGTCAC
GGTCCGGATAGCGATCGGTTGCCTACCTCGCACACCTGCTTCAACGTTCT
CCTCCTGCCCGAGTACAGCAGCCGCGAGAAGCTGGAGGAGCGCCTGATGA
AGGCCATCAACTACTCGAAGGGCTTCGGCATGCTGGCAAGCTTTCTAGAC
CAT
BO11255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ube3a-RA | 2922 | CG6190-PA | 1..2919 | 17..2935 | 14595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ube3a-RA | 3674 | CG6190-RA | 378..3296 | 17..2935 | 14595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11208929..11209733 | 1127..323 | 4025 | 100 | Minus |
| 3L | 28110227 | 3L | 11208005..11208561 | 1924..1368 | 2785 | 100 | Minus |
| 3L | 28110227 | 3L | 11207197..11207691 | 2600..2106 | 2475 | 100 | Minus |
| 3L | 28110227 | 3L | 11206800..11207135 | 2935..2600 | 1680 | 100 | Minus |
| 3L | 28110227 | 3L | 11209836..11210093 | 324..67 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 11208625..11208866 | 1369..1128 | 1210 | 100 | Minus |
| 3L | 28110227 | 3L | 11207755..11207939 | 2108..1924 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 11210154..11210206 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:14:32 has no hits.
BO11255.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:01 Download gff for
BO11255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| As-RA | 1..2922 | 17..2936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:37 Download gff for
BO11255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| As-RA | 375..3293 | 17..2937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:03 Download gff for
BO11255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ube3a-RA | 378..3296 | 17..2937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:01 Download gff for
BO11255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| As-RA | 364..3293 | 5..2935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:49 Download gff for
BO11255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ube3a-RA | 378..3296 | 17..2937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:49 Download gff for
BO11255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11206798..11207135 | 2600..2937 | 99 | <- | Minus |
| 3L | 11207198..11207690 | 2107..2599 | 100 | <- | Minus |
| 3L | 11207757..11207938 | 1925..2106 | 100 | <- | Minus |
| 3L | 11208005..11208559 | 1370..1924 | 100 | <- | Minus |
| 3L | 11208625..11208866 | 1128..1369 | 100 | <- | Minus |
| 3L | 11208929..11209731 | 325..1127 | 100 | <- | Minus |
| 3L | 11209836..11210090 | 70..324 | 100 | <- | Minus |
| 3L | 11210154..11210206 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:03 Download gff for
BO11255.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11199898..11200235 | 2600..2937 | 99 | <- | Minus |
| arm_3L | 11200298..11200790 | 2107..2599 | 100 | <- | Minus |
| arm_3L | 11200857..11201038 | 1925..2106 | 100 | <- | Minus |
| arm_3L | 11201105..11201659 | 1370..1924 | 100 | <- | Minus |
| arm_3L | 11201725..11201966 | 1128..1369 | 100 | <- | Minus |
| arm_3L | 11202029..11202831 | 325..1127 | 100 | <- | Minus |
| arm_3L | 11202936..11203190 | 70..324 | 100 | <- | Minus |
| arm_3L | 11203254..11203306 | 17..69 | 100 | | Minus |
BO11255.pep Sequence
Translation from 16 to 2953
> BO11255.pep
MNGGGGGEDDQHLPGVSSASGSAAGAVGGRATPEMKRSAVRSLIKRYFHQ
LQSGCGNANCSNANCASSGKVAPMTPNEVAARALQLFSQDAQLCEAFTSE
ANSPQDVDMLSPNDSSSSSSGSSTSTITSASTTTTTSRQSQSTPAAVVVP
VSSPYLTQSVPQLDIAGAEHSSGDSEPCTPTLAPVHSLDANSLIALYEQC
RAADSYDRICHAIGVVFSSVDRLGKSFIRSAEPAASSSLQELLANSPGAL
NKEQLRTLEGEHDKDEDSTQQVDEQSESAANATATAESVESEAEPEEEDD
DVCSSQSSDTLVDLPGLRRVQRLLFGCQIRAITEKLTSSVIQLSDWVIYM
RTDWERVIHCLVICFDLATNTNNSVVDMDYLDRVLPKLCQAASAMPVPAQ
ARLARIWAAHCSDQLHSLIAACQQQITLQVLLDEESMRENESIISVTKVL
KIVFYANILASELERPSCRVPLEDRTEAATASGSAAVEDDLFVYNSLLEP
HMPKFAEDQFEKELQVSAIDCRKPLIPLEEFYNEALSENIQMHHDYLSYK
TLAMESEIGSGHANYFSFMLYAFILTPSTKVDALYYDSRMRMYSERYSSL
HSILNNIGQVGQEDNPRPDLKLTVRRDQLINDALIGLEMVAMSNPKDLKK
QLVVEFVGEQGIDEGGVSKEFFQLIVEEIFNPAFGMFIQQEETNNMWFNA
TPFENGAQFTLIGIIIGLAIYNNVTLAVNFPMVVYRKLIGYCGTFADLSD
WSPALYKSLKSMLDYQGQDMEEVFEQTFKISYSDVFGDVVQHELVPNGQD
VLVGQHNKELFVNLYSDFLLNTNIEQQFNAFRKGFEMVTDESPLKLLFRP
EEIEMLVCGSREFDFVELENSTVYEGGYTEKSQYIQDFWSIVHAMPSEDK
HKLLEFTTGSARVPVGGLKCLRLLITRHGPDSDRLPTSHTCFNVLLLPEY
SSREKLEERLMKAINYSKGFGMLASFLDH
BO11255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ube3a-PA | 973 | CG6190-PA | 1..973 | 1..973 | 4990 | 100 | Plus |
| CG9153-PA | 1058 | CG9153-PA | 587..1058 | 479..973 | 730 | 34.9 | Plus |
| CG9153-PB | 1058 | CG9153-PB | 587..1058 | 479..973 | 730 | 34.9 | Plus |
| CG9153-PC | 1062 | CG9153-PC | 592..1062 | 479..973 | 730 | 35.1 | Plus |
| Su(dx)-PF | 949 | CG4244-PF | 594..946 | 620..970 | 455 | 32.2 | Plus |
