Clone Sequence Records
BO11256.5prime Sequence
561 bp (356 high quality bases) assembled on 2006-04-19
> BO11256.5prime
GAAGTTATCAGTCGACATGGCAAGTGCGAGCACTGAAAACGGCGAGGAGC
TGATGAATTACGGCAGCAATTCGGATTCGGAGGAGTCCGAGTACTCGGAG
AACGAGGATACCCAAGTTTGCGACAAGGATTCACAACTGAACAGCAATGC
CGATTCGGGCTATCCACTGGACTCGCCCGAACTACAGGACTCCAAGACGA
CGGGGCAAAAGGGACAGAACAAAAGCGGTAAAACTAGCATCGGTGCAGTG
CATCCGAACTATGGATTCGGCCAACGCTGGTCCAAGTCCGAGGATGTGTT
GCTCAAGCAGCTGGTGGAGACGCACGGTGAGAACTGGGAGATTATCGGAC
CGCATTTCAAGGATCGCCTGGAACAGCAAGTGCAGCAGCGTTGGGCCATA
GTCCTCATTCCGGAGCTAATCTAGGGCCCGTGGACGCGGGACGAGGACGA
CATGGTTATTAAGCTGGTGCGCAACTTCGGGCCCAAGAAATGGACACTAA
TTGCACGATATCTGATCGGACGATTTGCGAAACAGTGCCGCGAGAGATGG
CACAACCACCT
BO11256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9045-PA | 1974 | Myb-RA | 1..545 | 17..561 | 2525 | 98.5 | Plus |
| CG9045-PB | 1974 | Myb-RB | 1..545 | 17..561 | 2525 | 98.5 | Plus |
| CG9045-PD | 1974 | Myb-RD | 1..545 | 17..561 | 2525 | 98.5 | Plus |
| CG9045-PC | 1974 | Myb-RC | 1..545 | 17..561 | 2525 | 98.5 | Plus |
| CG9045-PE | 1974 | Myb-RE | 1..545 | 17..561 | 2525 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myb-RE | 2903 | CG9045-RE | 720..1264 | 17..561 | 2605 | 98.5 | Plus |
| Myb-RD | 2865 | CG9045-RD | 657..1201 | 17..561 | 2605 | 98.5 | Plus |
| Myb-RB | 2732 | CG9045-RB | 549..1093 | 17..561 | 2605 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15856560..15857104 | 561..17 | 2605 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:07:37 has no hits.
BO11256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:13 Download gff for
BO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-PA | 1..545 | 17..561 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:23 Download gff for
BO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9045-PE | 1..545 | 17..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:54:39 Download gff for
BO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RD | 655..1199 | 17..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:56 Download gff for
BO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RB | 549..1093 | 17..561 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:56 Download gff for
BO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15856560..15857104 | 17..561 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:54:39 Download gff for
BO11256.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15750593..15751137 | 17..561 | 98 | | Minus |
BO11256.complete Sequence
2005 bp assembled on 2008-11-10
> BO11256.complete
GAAGTTATCAGTCGACATGGCAAGTGCGAGCACTGAAAACGGCGAGGAGC
TGATGAATTACGGCAGCAATTCGGATTCGGAGGAGTCCGAGTACTCGGAG
AACGAGGATACCCAAGTTTGCGACAAGGATTCACAACAGAACAGCAATGC
CGATTCGGGCTATCCACTGGACTCGCCCGAACTACAGGACTCCAAGACGA
CGGGGCAAAAGGGACAGAACAAAAGCGGTAAAACTAGCATCGGTGCAGTG
CATCCGAACTATGGATTCGGCAAACGCTGGTCCAAGTCCGAGGATGTGTT
GCTCAAGCAGCTGGTGGAGACGCACGGTGAGAACTGGGAGATTATCGGAC
CGCATTTCAAGGATCGCCTGGAACAGCAAGTGCAGCAGCGTTGGGCCAAA
GTCCTCAATCCGGAGCTAATCAAGGGCCCGTGGACGCGGGACGAGGACGA
CATGGTTATTAAGCTGGTGCGCAACTTCGGGCCCAAGAAATGGACACTAA
TTGCACGATATCTGAACGGACGAATTGGGAAACAGTGCCGCGAGAGATGG
CACAACCACCTCAATCCGAATATCAAGAAAACGGCCTGGACCGAAAAGGA
GGACGAGATTATCTACCAGGCTCACTTGGAGCTGGGCAACCAGTGGGCAA
AGATTGCCAAACGTCTGCCCGGACGCACCGATAACGCCATTAAAAACCAT
TGGAATTCAACAATGCGTCGCAAATATGACGTCGAACGCAGATCGGTTAA
TGCATCTGGTAGCGATTTGAAGAGTTCGCGAACCCATCTCATCACGCTGA
TCAAGTCCGGTGGCATCAGCAAGTGTATGAATAATATGCAACATAACAAG
GAATCTGGTGGTGAGGCAGTTAATAAATCCGAAAACGCCGATGGCGCTTC
GGTTACTGCCGTGAAAGGTGGTGATCTGGCACAGGAATCACAAGACGATC
ATCAAAAGGGATCCAATCTGGCACACCTCAGTATGCAGCATCTCATTAAG
TTGACCATGCCGCGCCAAACACCGATCATATTGAAGCGTACACGCAAACA
CATTCCCGAAACTCACCATCAGGCAGGATGTTCATCAAGTGAGACATTCA
ACCAGGAAGAAGCCGCCGGAAACGCCAGGTCGCGACCACCGAGTTCGCCC
GTCATATCGCCCATTAAGTCGCTACCCTTTTCACCGAGTCACTTCCTCAA
GTCGCCTTGCCTGACCACCTTTGAAGATATGGATCTGCGGGCTAGCACGC
CGGTAACCAAGGTCTATAATCGCGTTGGAATGGAGATCAAAAAGGAAATG
GAGACATCGTCGATAGAAACTCCACACAAGAGTCAACTTGGACCACGAAC
ACCAACGCCCTTCAAAAAGGCACTTGCTGCCATCGGCAAGAAGAGGGACG
GTCGTCGATACGAGCCCTCCAGCCCATCCAGTCTGGTGGAGGATCTGGCC
GAAATCATCCATGAAGAGCATCTGAGCAACTCGCTGACCGCAAACAATTC
CAAAATGATGGGCGCCGCCGATCAGAACTCAACGCTAAGCACCGAATACA
ATGCTCAGTCGCCGCCGCATATGAAACGTGCCAGGAAGTCATTGCTCTCA
ACTTGGAGCTCCAATCATCCATACAACGCTGGCTCCGCCAAGAGGATTCA
ACCCTTCGAAACCGAGACGCCCAGCAAGTTTCTCACATCGCCGGGCGATA
TTTTGAAGGACACGCTGTGCAGCGAACAGGACCTGCCGTTCGACGAGGGC
AGAAAGGAGAATCGACCATTCCATAATCGCAGAATTAACAAGTACCGCGG
TGGCTTGACCTACGATCATGTCATTGATCCCAAGTGGGCACGCGTCGCTT
GTGGCAAGTCCAGAGATCAAATGTTTATGGAGGAGCAGGCTTATGCGTGC
CTCAAAAATCTGTCCTGTATTTCGCGCTCCCTGAACTTCGAGAAACAAAA
GTGTTTGGTGAATTCGTTCGACCGCTTTGGTTCGCTCGCAAGCTTTCTAG
ACCAT
BO11256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myb-RE | 1974 | CG9045-PE | 1..1971 | 17..1987 | 9855 | 100 | Plus |
| Myb-RD | 1974 | CG9045-PD | 1..1971 | 17..1987 | 9855 | 100 | Plus |
| Myb-RB | 1974 | CG9045-PB | 1..1971 | 17..1987 | 9855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myb-RE | 2903 | CG9045-RE | 720..2690 | 17..1987 | 9855 | 100 | Plus |
| Myb-RD | 2865 | CG9045-RD | 657..2627 | 17..1987 | 9855 | 100 | Plus |
| Myb-RB | 2732 | CG9045-RB | 549..2519 | 17..1987 | 9855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15855788..15857104 | 1333..17 | 6585 | 100 | Minus |
| X | 23542271 | X | 15855070..15855725 | 1987..1332 | 3280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:51:30 has no hits.
BO11256.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:16 Download gff for
BO11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RD | 655..2631 | 17..1995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:52 Download gff for
BO11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RD | 655..2625 | 17..1989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:53 Download gff for
BO11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RD | 655..2625 | 17..1989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:16 Download gff for
BO11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myb-RB | 549..2519 | 17..1989 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:16 Download gff for
BO11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15855068..15855725 | 1332..1989 | 99 | <- | Minus |
| X | 15855790..15857104 | 17..1331 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:52 Download gff for
BO11256.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15749101..15749758 | 1332..1989 | 99 | <- | Minus |
| arm_X | 15749823..15751137 | 17..1331 | 100 | | Minus |
BO11256.pep Sequence
Translation from 16 to 2005
> BO11256.pep
MASASTENGEELMNYGSNSDSEESEYSENEDTQVCDKDSQQNSNADSGYP
LDSPELQDSKTTGQKGQNKSGKTSIGAVHPNYGFGKRWSKSEDVLLKQLV
ETHGENWEIIGPHFKDRLEQQVQQRWAKVLNPELIKGPWTRDEDDMVIKL
VRNFGPKKWTLIARYLNGRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIY
QAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKYDVERRSVNASGSD
LKSSRTHLITLIKSGGISKCMNNMQHNKESGGEAVNKSENADGASVTAVK
GGDLAQESQDDHQKGSNLAHLSMQHLIKLTMPRQTPIILKRTRKHIPETH
HQAGCSSSETFNQEEAAGNARSRPPSSPVISPIKSLPFSPSHFLKSPCLT
TFEDMDLRASTPVTKVYNRVGMEIKKEMETSSIETPHKSQLGPRTPTPFK
KALAAIGKKRDGRRYEPSSPSSLVEDLAEIIHEEHLSNSLTANNSKMMGA
ADQNSTLSTEYNAQSPPHMKRARKSLLSTWSSNHPYNAGSAKRIQPFETE
TPSKFLTSPGDILKDTLCSEQDLPFDEGRKENRPFHNRRINKYRGGLTYD
HVIDPKWARVACGKSRDQMFMEEQAYACLKNLSCISRSLNFEKQKCLVNS
FDRFGSLASFLDH
BO11256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myb-PE | 657 | CG9045-PE | 1..657 | 1..657 | 3482 | 100 | Plus |
| Myb-PD | 657 | CG9045-PD | 1..657 | 1..657 | 3482 | 100 | Plus |
| Myb-PB | 657 | CG9045-PB | 1..657 | 1..657 | 3482 | 100 | Plus |
| Myb-PA | 657 | CG9045-PA | 1..657 | 1..657 | 3482 | 100 | Plus |
| Cdc5-PB | 814 | CG6905-PB | 9..92 | 137..221 | 164 | 37.6 | Plus |
