Clone Sequence Records
BO11257.complete Sequence
4096 bp assembled on 2009-09-17
GenBank Submission: FJ632045
> BO11257.complete
GAAGTTATCAGTCGACATGGCCACCAGCGGTATTGTCGAGTCATTTCCCA
CGGGCGCACTGGTGCCCAAGGCGGAGACGGGAGTCCTGAACTTTCTGCAG
AAGTACCCGGAGTACGATGGACGCGACGTCACCATAGCCATCTTCGATTC
CGGCGTCGATCCCCGGGCAACGGGACTGGAGACGCTGTGCGATGGAAAGA
CCGTTAAAGTAATAGAGCGGTACGACTGTTCCGGATGCGGCGACGTGGAC
ATGAAGAAGAAGGTGACGCCGGACGAGAACGGCAACATTAAGGGCCTGTC
CGGAAACTCGCTCAAGCTGAGTCCGGAGCTGATGGCTCTGAACACAGATC
CGGAGAAGGCGGTGCGGGTAGGCCTCAAGAGCTTCAGCGATTTGTTGCCC
TCCAAGGTGCGGAACAACATTGTGGCCCAGGCCAAGCTGAAGCACTGGGA
CAAGCCGCACAAGACGGCCACTGCAAACGCCAGTCGCAAGATTGTTGAAT
TTGAGTCACAAAATCCAGGAGAAGCCTCAAAACTGCCCTGGGACAAGAAG
ATATTGAAAGAGAATCTAGACTTTGAGCTAGAGATGTTGAATAGCTACGA
GAAGGTGTACGGCGACATTAAGACCTCCTACGATTGCATCCTTTTTCCCA
CGGCCGACGGATGGCTGACAATCGTCGACACCACGGAGCAGGGCGATCTG
GATCAGGCTCTGCGCATTGGCGAGTATTCCCGCACGCACGAGACCCGCAA
TGTGGACGACTTTCTTTCCATATCGGTAAACGTCCACGACGAGGGCAACG
TACTGGAGGTGGTCGGCATGAGCTCACCCCACGGCACCCACGTATCGTCT
ATTGCCAGCGGCAACCATAGCTCCCGGGACGTGGATGGCGTGGCGCCGAA
TGCTAAGATCGTTTCTATGACCATCGGTGATGGTCGACTTGGGTCTATGG
AGACCGGCACGGCACTAGTGCGTGCCATGACTAAGGTGATGGAACTATGT
CGCGATGGCAGACGCATCGATGTGATCAACATGAGCTATGGCGAGCATGC
CAATTGGTCAAATTCCGGCCGCATTGGGGAGCTCATGAACGAGGTTGTCA
ACAAGTATGGCGTGGTGTGGGTGGCATCGGCCGGCAACCATGGTCCGGCA
CTTTGTACTGTGGGAACTCCGCCGGACATCAGCCAGCCCAGTTTGATCGG
CGTGGGCGCGTACGTATCACCCCAAATGATGGAGGCCGAGTATGCGATGC
GAGAAAAGCTGCCCGGGAACGTGTACACCTGGACATCGCGAGATCCCTGC
ATCGACGGAGGTCAAGGCGTTACCGTATGCGCTCCGGGCGGAGCCATTGC
GTCCGTGCCACAGTTTACTATGAGCAAGTCCCAGCTGATGAACGGTACCA
GCATGGCGGCACCTCACGTCGCCGGCGCAGTGGCGCTGCTCATCTCCGGT
CTGAAGCAACAGAACATCGAGTATTCGCCGTACAGTATTAAGCGAGCGAT
CAGCGTCACTGCCACCAAACTGGGCTATGTAGATCCCTTTGCTCAGGGCC
ATGGCTTGCTCAATGTCGAGAAGGCATTCGAGCATTTGACGGAGCACCGC
CAGTCCAAGGATAATATGCTCAGGTTCTCCGTGCGCGTGGGCAACAACGC
AGACAAGGGCATTCATTTGCGTCAGGGCGTGCAGCGTAACTCCATCGATT
ACAACGTTTATATAGAGCCCATCTTCTACAATGACAAGGAGGCGGATCCC
AAGGACAAGTTTAACTTCAATGTACGGCTAAATCTGATTGCCTCGCAGCC
GTGGGTGCAGTGTGGAGCTTTCTTGGATCTCAGCTATGGCACCCGCTCCA
TTGCCGTGCGCGTCGATCCCACTGGACTCCAGCCAGGCGTTCACAGCGCT
GTGATTCGGGCTTATGACACTGACTGCGTACAGAAGGGTTCTCTCTTTGA
GATTCCTGTCACGGTGGTGCAGCCCCATGTGCTGGAGTCGGATCAGAACA
CGCCCGTCTTCGAACCCGCCTCTTCCAAGGGAGACAACAGCGTGGAGTTT
CAGCCAAACACCATTCAAAGAGACTTCATCCTGGTGCCAGAACGTGCTAC
TTGGGCGGAGTTGCGTATGCGTATAACCGATCCCAATCGTGGCGAGGACA
TTGGAAAGTTCTTTGTACACACGAACCAACTTCTTCCCAAGCAATCCTGT
CGTAAGCTTGAGACCATGAAGATCGTATCGGTTGGCTCGGAAAACGAATC
TATAATGGCTTTTAAAGTTAAGTCTGGCAGGATTCTGGAGCTATGCATTG
CCAAGTACTGGTCCAACTACGGCCAGAGTCACCTGAAGTACAGCTTGCGT
TTCCGTGGCGTGGAAGCGCACAATCCCAATGCCTACGTCATGCATGCGGG
CAGGGGAATTCATAAGCTGGAGATTGAGGCCCTGGTTGCCGAGGATGTGC
AGCCCCAGCTACAGCTAAAGAATGCCGAAGTGGTGCTAAAACCGACCGAG
GCCAAGATCTCGCCGCTAAGCGCCACACGAGACGTCATCCCAGATGGACG
TCAGGTGTATCAGAACCTGCTGGCCTTTAACTTGAACGTGGCCAAGGCCG
CAGATGTGTCGATATACGCACCGATCTTTAACGACTTGTTGTATGAAGCG
GAGTTTGAGTCACAGATGTGGATGCTTTTTGATGCAAACAAGGCCCTGGT
GGCCACCGGCGATGCTCACTCCCACACTTCCTTCACAAAGCTCGATAAGG
GCGAATACACAATCAGACTGCAGGTGCGTCACGAGAAGCGCGACCTGCTG
GAGAAGATCTCGGAGGCAAATCTGGTGGCCTCATTCAAGCTGACTAGCCC
CCTCACCCTTGATTTCTATGAGAACTACAATCAGTGCATAGTGGGAGGTC
GTAAATACGTCTCGAGTCCGCTAAGGCTGTCCACTCGGGTGCTTTATATC
GCTCCTATTACCCAAGAGCGACTTACCAAGGCCAATCTGCCCGCTCAATG
CGCCTGGCTGAGCGGCAATCTGGTATTCCCGCAAGATGAGGTCGGACGGC
GAGTGGCTCAGCATCCATTTACTTACATCCTCAATCCCGCTGAGAAAAAG
TCACACACGAATGGCTCGAGCAACGGTTCCAGCGCTGCAGGATCCACAGC
TACGGCAGCTGCTGTCACCACTGCTAATGGCGCAAAACCGAAAGCTCCGG
CGACTCCACAAGCGGCCACCTCAGTGACCAATCCTGCGGCCGGCGATGGA
ATTTCTGTTCAGAACGACCCGCCTGTGGACAGCAGTGGGAGTCCCGCCTC
ACCCAAAAAGGGCAAGGCCAATGCCGACGATTATGCCGAAAGTTTTCGCG
ACTTTCAATGTTCGCAGATTGTCAAGTGTGAACTGGAAATGGCAGAGAAA
ATCTATAATGATGTAGTCGCTGCCCATCCCAAGCATTTGCAGGCAAACCT
GCTACTTATCCAGAACATCGAGTCCAATCAGCTGAAGTCGCAACTGCCGC
TGACTTTCGTCAATGCTCAAAAGACATCGCCACCAGAGGCAGGCGAGAGC
GCCGACAAGCAAAAGGAGGATCAAAAGAAAGTACGAAGCGCCCTGGAGCG
AATTGTTAAGCTGGCCGACAAGGTGATCCAGGAGACCGATTCCGAGGCAC
TGCTCTCCTACTACGGTCTGAAGAACGACACTCGTGCCGATGCAGCCAAG
ATAAAGACCAACATGGACAAACAGAAAAACACTCTCATTGAGGCGCTAAG
CAAGAAGGGCATTGCTGTGGCAAAGCTGGCTGTATTAGACGACTGTATCA
AGGATAGCCTGGCTGAGATCAACGAGCTGTATACCGAGATTATCAAGTTC
GTGGACGCCAACGACTCCAAGGCCATCCAGTTCGCTCTGTGGCACGCCTA
TGCCCATGGCCACTACGGTCGCATGTACAAGTATGTGGTTAAGCTAATCG
AGGAGAAGCGAACCCGCGATCACTTCGTGGAGCTGGCCGCCATCAACGGC
GCCCTGGGTCACGAGCACATCCGTACTGTCATCAACCGTATGATGATCAC
TGCCTTTCCCAGCAGCTTCCGTTTGTTCGCAAGCTTTCTAGACCAT
BO11257.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-RF | 4065 | CG3991-PF | 1..4062 | 17..4078 | 20310 | 100 | Plus |
| TppII-RA | 4065 | CG3991-PA | 1..4062 | 17..4078 | 20310 | 100 | Plus |
| TppII-RD | 4326 | CG3991-PD | 262..4323 | 17..4078 | 20310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-RF | 4375 | CG3991-RF | 202..4263 | 17..4078 | 20310 | 100 | Plus |
| TppII-RA | 4287 | CG3991-RA | 114..4175 | 17..4078 | 20310 | 100 | Plus |
| TppII-RD | 4641 | CG3991-RD | 468..4529 | 17..4078 | 20310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13153814..13154809 | 3380..2385 | 4980 | 100 | Minus |
| 2R | 25286936 | 2R | 13156074..13156631 | 1625..1068 | 2790 | 100 | Minus |
| 2R | 25286936 | 2R | 13156887..13157439 | 1068..516 | 2765 | 100 | Minus |
| 2R | 25286936 | 2R | 13152997..13153366 | 4078..3709 | 1850 | 100 | Minus |
| 2R | 25286936 | 2R | 13157495..13157834 | 519..180 | 1700 | 100 | Minus |
| 2R | 25286936 | 2R | 13153425..13153753 | 3708..3380 | 1645 | 100 | Minus |
| 2R | 25286936 | 2R | 13155269..13155474 | 2108..1903 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 13155047..13155211 | 2272..2108 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 13158020..13158184 | 181..17 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 13155536..13155694 | 1903..1745 | 795 | 100 | Minus |
| 2R | 25286936 | 2R | 13155748..13155871 | 1745..1622 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 13154870..13154983 | 2384..2271 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:39:28 has no hits.
BO11257.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:08 Download gff for
BO11257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RA | 121..4182 | 17..4080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:57 Download gff for
BO11257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 468..4529 | 17..4080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:15 Download gff for
BO11257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RA | 121..4182 | 17..4080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:50 Download gff for
BO11257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 468..4529 | 17..4080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:50 Download gff for
BO11257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13152994..13153366 | 3709..4080 | 99 | <- | Minus |
| 2R | 13153425..13153752 | 3381..3708 | 100 | <- | Minus |
| 2R | 13153814..13154809 | 2385..3380 | 100 | <- | Minus |
| 2R | 13154870..13154981 | 2273..2384 | 100 | <- | Minus |
| 2R | 13155047..13155210 | 2109..2272 | 100 | <- | Minus |
| 2R | 13155269..13155474 | 1903..2108 | 100 | <- | Minus |
| 2R | 13155537..13155693 | 1746..1902 | 100 | <- | Minus |
| 2R | 13155748..13155869 | 1624..1745 | 100 | <- | Minus |
| 2R | 13156076..13156630 | 1069..1623 | 100 | <- | Minus |
| 2R | 13156887..13157436 | 519..1068 | 100 | <- | Minus |
| 2R | 13157496..13157832 | 182..518 | 100 | <- | Minus |
| 2R | 13158020..13158184 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:57 Download gff for
BO11257.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9040499..9040871 | 3709..4080 | 99 | <- | Minus |
| arm_2R | 9040930..9041257 | 3381..3708 | 100 | <- | Minus |
| arm_2R | 9041319..9042314 | 2385..3380 | 100 | <- | Minus |
| arm_2R | 9042375..9042486 | 2273..2384 | 100 | <- | Minus |
| arm_2R | 9042552..9042715 | 2109..2272 | 100 | <- | Minus |
| arm_2R | 9042774..9042979 | 1903..2108 | 100 | <- | Minus |
| arm_2R | 9043042..9043198 | 1746..1902 | 100 | <- | Minus |
| arm_2R | 9043253..9043374 | 1624..1745 | 100 | <- | Minus |
| arm_2R | 9043581..9044135 | 1069..1623 | 100 | <- | Minus |
| arm_2R | 9044392..9044941 | 519..1068 | 100 | <- | Minus |
| arm_2R | 9045001..9045337 | 182..518 | 100 | <- | Minus |
| arm_2R | 9045525..9045689 | 17..181 | 100 | | Minus |
BO11257.3prime Sequence
825 bp (809 high quality bases) assembled on 2006-04-19
> BO11257.3prime
ATGGTCTAGAAAGCTTGCGAACAAACGGAAGCTGCTGGGAAAGGCAGTGA
TCATCATACGGTTGATGACAGTACGGATGTGCTCGTGACCCAGGGCGCCG
TTGATGGCGGCCAGCTCCACGAAGTGATCGCGGGTTCGCTTCTCCTCGAT
TAGCTTAACCACATACTTGTACATGCGACCGTAGTGGCCATGGGCATAGG
CGTGCCACAGAGCGAACTGGATGGCCTTGGAGTCGTTGGCGTCCACGAAC
TTGATAATCTCGGTATACAGCTCGTTGATCTCAGCCAGGCTATCCTTGAT
ACAGTCGTCTAATACAGCCAGCTTTGCCACAGCAATGCCCTTCTTGCTTA
GCGCCTCAATGAGAGTGTTTTTCTGTTTGTCCATGTTGGTCTTTATCTTG
GCTGCATCGGCACGAGTGTCGTTCTTCAGACCGTAGTAGGAGAGCAGTGC
CTCGGAATCGGTCTCCTGGATCACCTTGTCGGCCAGCTTAACAATTCGCT
CCAGGGCGCTTCGTACTTTCTTTTGATCCTCCTTTTGCTTGTCGGCGCTC
TCGCCTGCCTCTGGTGGCGATGTCTTTTGAGCATTGACGAAAGTCAGCGG
CAGTTGCGACTTCAGCTGATTGGACTCGATGTTCTGGATAAGTAGCAGGT
TTGCCTGCAAATGCTTGGGATGGGCAGCGACTACATCATTATAGATTTTC
TCTGCCATTTCCAGTTCACACTTGACAATCTGCGAACATTGAAAGTCGCG
AAAACTTTCGGCATAATCGTCGGCATTGGCCTTGCCCTTTTTTGGGTGAG
GCGGGACTCCCACTGCTGTCCACAG
BO11257.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3991-PD | 4326 | TppII-RD | 3550..4323 | 792..19 | 3870 | 100 | Minus |
| CG3991-PA | 4065 | TppII-RA | 3289..4062 | 792..19 | 3870 | 100 | Minus |
| CG3991-PD | 4326 | TppII-RD | 3518..3554 | 825..789 | 185 | 100 | Minus |
| CG3991-PA | 4065 | TppII-RA | 3257..3293 | 825..789 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-RE | 4350 | CG3991-RE | 3433..4238 | 825..19 | 4010 | 99.9 | Minus |
| TppII-RF | 4375 | CG3991-RF | 3458..4263 | 825..19 | 4010 | 99.9 | Minus |
| TppII-RA | 4287 | CG3991-RA | 3370..4175 | 825..19 | 4010 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13152997..13153366 | 19..388 | 1850 | 100 | Plus |
| 2R | 25286936 | 2R | 13153425..13153753 | 389..717 | 1645 | 100 | Plus |
| 2R | 25286936 | 2R | 13153814..13153921 | 717..825 | 495 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:20:46 has no hits.
BO11257.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:14 Download gff for
BO11257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-PA | 3257..4065 | 16..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:25 Download gff for
BO11257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3991-PA | 3257..4065 | 16..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:26:29 Download gff for
BO11257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 3724..4534 | 13..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:29 Download gff for
BO11257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RA | 3370..4180 | 13..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:29 Download gff for
BO11257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13152992..13153366 | 13..388 | 99 | <- | Plus |
| 2R | 13153425..13153752 | 389..716 | 100 | <- | Plus |
| 2R | 13153814..13153921 | 717..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:26:29 Download gff for
BO11257.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9040497..9040871 | 13..388 | 99 | <- | Plus |
| arm_2R | 9040930..9041257 | 389..716 | 100 | <- | Plus |
| arm_2R | 9041319..9041426 | 717..825 | 99 | | Plus |
BO11257.5prime Sequence
848 bp (726 high quality bases) assembled on 2006-04-19
> BO11257.5prime
GAAGTTATCAGTCGACATGGCCACCAGCGGTATTGTCGAGTCATTTCCCA
CGGGCGCACTGGTGCCCAAGGCGGAGACGGGAGTCCTGAACTTTCTGCAG
AAGTACCCGGAGTACGATGGACGCGACGTCACCATAGCCATCTTCGATTC
CGGCGTCGATCCCCGGGCAACGGGACTGGAGACGCTGTGCGATGGAAAGA
CCGTTAAAGTAATAGAGCGGTACGACTGTTCCGGATGCGGCGACGTGGAC
ATGAAGAAGAAGGTGACGCCGGACGAGAACGGCAACATTAAGGGCCTGTC
CGGAAACTCGCTCAAGCTGAGTCCGGAGCTGATGGCTCTGAACACAGATC
CGGAGAAGGCGGTGCGGGTAGGCCTCAAGAGCTTCAGCGATTTGTTGCCC
TCCAAGGTGCGGAACAACATTGTGGCCCAGGCCAAGCTGAAGCACTGGGA
CAAGCCGCACAAGACGGCCACTGCAAACGCCAGTCGCAAGATTGTTGAAT
TTGAGTCACAAAATCCAGGAGAAGCCTCAAAACTGCCCTGGGACAAGAAG
ATATTGAAAGAGAATCTAGACTTTGAGCTAGAGATGTTGAATAGCTACGA
GAAGGTGTACGGCGACATTAAGACCTCCTACGATTGCATCCTTTTTCCCA
CGGCCGACGGATGGCTGACAATCGTCGACACCACGGAGCAGGGCGATCTG
GATCAGGCTCTGCGCATTGGCGAGTATTCCCGCACGCACGAGACCCGCAA
TGTGGACGACTTTCTTTTCATATCGGTAAACGTCCACGACGAGGGCAACG
TACTGGAGGTGGTCGGCATGAGCTCACCCCACGGCACCCACGTATCGT
BO11257.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3991-PD | 4326 | TppII-RD | 262..1093 | 17..848 | 4135 | 99.8 | Plus |
| CG3991-PA | 4065 | TppII-RA | 1..832 | 17..848 | 4135 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-RE | 4350 | CG3991-RE | 114..945 | 17..848 | 4145 | 99.9 | Plus |
| TppII-RF | 4375 | CG3991-RF | 202..1033 | 17..848 | 4145 | 99.9 | Plus |
| TppII-RA | 4287 | CG3991-RA | 114..945 | 17..848 | 4145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13157495..13157834 | 519..180 | 1700 | 100 | Minus |
| 2R | 25286936 | 2R | 13157107..13157439 | 848..516 | 1650 | 99.7 | Minus |
| 2R | 25286936 | 2R | 13158020..13158184 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:40:50 has no hits.
BO11257.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:15 Download gff for
BO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:26 Download gff for
BO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3991-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:49:02 Download gff for
BO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 464..1299 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:19 Download gff for
BO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RA | 110..945 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:19 Download gff for
BO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13157496..13157832 | 182..518 | 100 | <- | Minus |
| 2R | 13158020..13158188 | 9..181 | 97 | | Minus |
| 2R | 13157107..13157436 | 519..848 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:49:02 Download gff for
BO11257.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9044612..9044941 | 519..848 | 99 | <- | Minus |
| arm_2R | 9045001..9045337 | 182..518 | 100 | <- | Minus |
| arm_2R | 9045525..9045693 | 9..181 | 97 | | Minus |
BO11257.pep Sequence
Translation from 16 to 4096
> BO11257.pep
MATSGIVESFPTGALVPKAETGVLNFLQKYPEYDGRDVTIAIFDSGVDPR
ATGLETLCDGKTVKVIERYDCSGCGDVDMKKKVTPDENGNIKGLSGNSLK
LSPELMALNTDPEKAVRVGLKSFSDLLPSKVRNNIVAQAKLKHWDKPHKT
ATANASRKIVEFESQNPGEASKLPWDKKILKENLDFELEMLNSYEKVYGD
IKTSYDCILFPTADGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVDDFL
SISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNHSSRDVDGVAPNAKIVS
MTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNS
GRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYV
SPQMMEAEYAMREKLPGNVYTWTSRDPCIDGGQGVTVCAPGGAIASVPQF
TMSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTAT
KLGYVDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIH
LRQGVQRNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCG
AFLDLSYGTRSIAVRVDPTGLQPGVHSAVIRAYDTDCVQKGSLFEIPVTV
VQPHVLESDQNTPVFEPASSKGDNSVEFQPNTIQRDFILVPERATWAELR
MRITDPNRGEDIGKFFVHTNQLLPKQSCRKLETMKIVSVGSENESIMAFK
VKSGRILELCIAKYWSNYGQSHLKYSLRFRGVEAHNPNAYVMHAGRGIHK
LEIEALVAEDVQPQLQLKNAEVVLKPTEAKISPLSATRDVIPDGRQVYQN
LLAFNLNVAKAADVSIYAPIFNDLLYEAEFESQMWMLFDANKALVATGDA
HSHTSFTKLDKGEYTIRLQVRHEKRDLLEKISEANLVASFKLTSPLTLDF
YENYNQCIVGGRKYVSSPLRLSTRVLYIAPITQERLTKANLPAQCAWLSG
NLVFPQDEVGRRVAQHPFTYILNPAEKKSHTNGSSNGSSAAGSTATAAAV
TTANGAKPKAPATPQAATSVTNPAAGDGISVQNDPPVDSSGSPASPKKGK
ANADDYAESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQN
IESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQKKVRSALERIVKLA
DKVIQETDSEALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIA
VAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHY
GRMYKYVVKLIEEKRTRDHFVELAAINGALGHEHIRTVINRMMITAFPSS
FRLFASFLDH
BO11257.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-PF | 1354 | CG3991-PF | 1..1354 | 1..1354 | 6993 | 100 | Plus |
| TppII-PA | 1354 | CG3991-PA | 1..1354 | 1..1354 | 6993 | 100 | Plus |
| TppII-PD | 1441 | CG3991-PD | 88..1441 | 1..1354 | 6993 | 100 | Plus |
| TppII-PE | 1375 | CG3991-PE | 1..1375 | 1..1354 | 6961 | 98.5 | Plus |
| S1P-PA | 1012 | CG7169-PA | 200..431 | 272..528 | 176 | 27.2 | Plus |
