Clone Sequence Records
BO11263.3prime Sequence
832 bp (680 high quality bases) assembled on 2006-04-19
> BO11263.3prime
ATGGTCTAGAAAGCTTGCAGTCATATTCCAGGAGGACGAAGACGAGCTAG
AAGAGCAATCGTCGCTCTCAGTCGTTGCGCTGCTGCCGTTGGGCTTCGGT
CCCCAGATTCTCACGGTGGCGTCATCGCTTGCGCTGGCCAGCAGGGACGG
GTACACGGGATTCCAGGACACGCAGTTCACCGTCTTAGTGTGCCCGGCCA
GCTTGGCCAGCGGCTCCTCGCGCTTGATGTGCCAAATGTAGACAACCTTG
TCCTCACTGCCGCTGGCAACGAAGCTCTCGTTAACGCCGCCGAAGCAGGA
GTGGATGGCGAAGTTGCTCTGACGTATTCCCTGGAAACGGCGCACAAGGC
ACTTGTCCTCGATGTCCCAAAGGTGAAGGCCTTGGTTCGAGACGTTCAGC
AAGGCCAAGCGGTCGGCGGAGTTGATACTAAAGGTCATTATGGGATGTGG
CTCCCTCAGAATATCAAAGTCTGAACGCGGGCTATCAAAGTTGTACCCTC
TGATTCGGTAATGATTATCCGCCGCTAAGATCGTTTTGTTGTCCGCCCGA
AAGGCTATGCTGTTTACGCGCACTCCCTCCCAGGAGTCCACGATGGTACC
GTTGAGGTCGCATAGGTAAAGCTGACCCTTCTGGCCGCCGCAGACGAATC
GAGCGCCATCGCGACTGAAGGCACCGCAGGCCCAGCTGTCCTCCAGAGAC
TGCGAGAACTTGACCACTAGCTTGCCGTCGTCCACGTTCCAGATGTAGAG
CTCATGAGAGTCCTCGGTGCCGCCGACCAAGATGAGCTTGGAGTCGGGGC
TCCAGCTGACGAAGCTCACGCTAAGCTGGGCC
BO11263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-PE | 1893 | CG7611-RE | 1077..1890 | 832..19 | 3945 | 99.3 | Minus |
CG7611-PF | 1893 | CG7611-RF | 1077..1890 | 832..19 | 3945 | 99.3 | Minus |
CG7611-PG | 1893 | CG7611-RG | 1077..1890 | 832..19 | 3945 | 99.3 | Minus |
CG7611-PB | 1893 | CG7611-RB | 1077..1890 | 832..19 | 3945 | 99.3 | Minus |
CG7611-PH | 1893 | CG7611-RH | 1077..1890 | 832..19 | 3945 | 99.3 | Minus |
CG7611-PC | 1893 | CG7611-RC | 1077..1890 | 832..19 | 3945 | 99.3 | Minus |
CG7611-PD | 1893 | CG7611-RD | 1077..1890 | 832..19 | 3945 | 99.3 | Minus |
CG7611-PA | 1893 | CG7611-RA | 1077..1890 | 832..19 | 3945 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-RJ | 3001 | CG7611-RJ | 1686..2499 | 832..19 | 3995 | 99.4 | Minus |
CG7611-RI | 4464 | CG7611-RI | 3149..3962 | 832..19 | 3995 | 99.4 | Minus |
CG7611-RA | 3810 | CG7611-RA | 2495..3308 | 832..19 | 3995 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21527183..21527661 | 497..19 | 2395 | 100 | Minus |
3L | 28110227 | 3L | 21526601..21526938 | 832..495 | 1615 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:04:08 has no hits.
BO11263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:26 Download gff for
BO11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-PH | 1077..1893 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:42 Download gff for
BO11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-PA | 1077..1893 | 15..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:33:05 Download gff for
BO11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 2495..3312 | 14..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:33 Download gff for
BO11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 2495..3312 | 14..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:33 Download gff for
BO11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21526601..21526936 | 497..832 | 98 | -> | Minus |
3L | 21527184..21527665 | 14..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:33:05 Download gff for
BO11263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21519701..21520036 | 497..832 | 98 | -> | Minus |
arm_3L | 21520284..21520765 | 14..496 | 99 | | Minus |
BO11263.5prime Sequence
816 bp (770 high quality bases) assembled on 2006-04-19
> BO11263.5prime
GAAGTTATCAGTCGACATGCAGAGCACCAGTTCCACGTCGAGCGGCTCTT
GCTCCAGGCCCCTCGAGGGTTCCACACTCAATTCCGGCGGCAGTGCCGAG
AACGTGGCTCGCGATGGAGGCAGTGGCGATGACAGCGTCGGCATCGGTGA
TGAGAATCCATCGGGCAGCAGCGCCGCCACGAACGGACACGACTCCAAAC
ACAACGGCTTCATTGTCAACAATAACGGCAGCAGCAGTCGCATCGTCGAC
GGCGAGAACAATCGGGAAAACACCAGCTGCAGCGGTGTGCAGCTGGACAA
GTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTCG
GTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTG
GAACACCCCTCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTG
GTCAAAGGCAGATTCAGACCTTAAGGACCTAGAGCCACTAATCGACAATG
GGAAATTGGCAACGATCACCGAAATGAAGTTCATATTGCTGGAGCAAAAG
TATTTAGAGCATTTGGATGATGGCAATCCCTTGGACGCCCTTCACGTCCT
TCGCAGCGAGCTGACTCCCCTGCAGCACAACATAACGCGTGTGCACCAGC
TGTCCTCGTACATGATGTGTTCTACCAACCAAGACCTTTACCAGCGTGCC
AAGTGGGAGGGCAAGGGCATCCTGTCGCGTGCCTTGGTCATGGAGCGCCT
ACAGACATTTATGCCGCCGTCGGTGATGATGTCGCCCCGGGCGCCTGCGC
ACCCTGCTGCAGCAGG
BO11263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-PE | 1893 | CG7611-RE | 1..770 | 17..786 | 3850 | 100 | Plus |
CG7611-PF | 1893 | CG7611-RF | 1..770 | 17..786 | 3850 | 100 | Plus |
CG7611-PG | 1893 | CG7611-RG | 1..770 | 17..786 | 3850 | 100 | Plus |
CG7611-PB | 1893 | CG7611-RB | 1..770 | 17..786 | 3850 | 100 | Plus |
CG7611-PH | 1893 | CG7611-RH | 1..770 | 17..786 | 3850 | 100 | Plus |
CG7611-PC | 1893 | CG7611-RC | 1..770 | 17..786 | 3850 | 100 | Plus |
CG7611-PD | 1893 | CG7611-RD | 1..770 | 17..786 | 3850 | 100 | Plus |
CG7611-PA | 1893 | CG7611-RA | 1..770 | 17..786 | 3850 | 100 | Plus |
CG7611-PE | 1893 | CG7611-RE | 773..799 | 790..816 | 135 | 100 | Plus |
CG7611-PF | 1893 | CG7611-RF | 773..799 | 790..816 | 135 | 100 | Plus |
CG7611-PG | 1893 | CG7611-RG | 773..799 | 790..816 | 135 | 100 | Plus |
CG7611-PB | 1893 | CG7611-RB | 773..799 | 790..816 | 135 | 100 | Plus |
CG7611-PH | 1893 | CG7611-RH | 773..799 | 790..816 | 135 | 100 | Plus |
CG7611-PC | 1893 | CG7611-RC | 773..799 | 790..816 | 135 | 100 | Plus |
CG7611-PD | 1893 | CG7611-RD | 773..799 | 790..816 | 135 | 100 | Plus |
CG7611-PA | 1893 | CG7611-RA | 773..799 | 790..816 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-RJ | 3001 | CG7611-RJ | 609..1408 | 16..816 | 3965 | 99.8 | Plus |
CG7611-RI | 4464 | CG7611-RI | 2072..2871 | 16..816 | 3965 | 99.8 | Plus |
CG7611-RA | 3810 | CG7611-RA | 1418..2217 | 16..816 | 3965 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21525257..21525717 | 16..476 | 2305 | 100 | Plus |
3L | 28110227 | 3L | 21525982..21526323 | 474..816 | 1650 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:47:56 has no hits.
BO11263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:27 Download gff for
BO11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-PG | 1..799 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:43 Download gff for
BO11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-PH | 1..799 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:05:10 Download gff for
BO11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 1411..2217 | 10..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:39:07 Download gff for
BO11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 1411..2217 | 10..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:39:07 Download gff for
BO11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21525250..21525716 | 10..475 | 99 | -> | Plus |
3L | 21525984..21526323 | 476..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:05:10 Download gff for
BO11263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21519084..21519423 | 476..816 | 99 | | Plus |
arm_3L | 21518350..21518816 | 10..475 | 99 | -> | Plus |
BO11263.complete Sequence
1924 bp assembled on 2008-01-16
GenBank Submission: FJ632046
> BO11263.complete
GAAGTTATCAGTCGACATGCAGAGCACCAGTTCCACGTCGAGCGGCTCTT
GCTCCAGGCCCCTCGAGGGTTCCACACTCAATTCCGGCGGCAGTGCCGAG
AACGTGGCTCGCGATGGAGGCAGTGGCGATGACAGCGTCGGCATCGGTGA
TGAGAATCCATCGGGCAGCAGCGCCGCCACGAACGGACACGACTCCAAAC
ACAACGGCTTCATTGTCAACAATAACGGCAGCAGCAGTCGCATCGTCGAC
GGCGAGAACAATCGGGAAAACACCAGCTGCAGCGGTGTGCAGCTGGACAA
GTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTCG
GTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTG
GAACACCCCTCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTG
GTCAAAGGCAGATTCAGACCTTAAGGACCTAGAGCCACTAATCGACAATG
GGAAATTGGCAACGATCACCGAAATGAAGTTCATATTGCTGGAGCAAAAG
TATTTAGAGCATTTGGATGATGGCAATCCCTTGGACGCCCTTCACGTCCT
TCGCAGCGAGCTGACTCCCCTGCAGCACAACATAACGCGTGTGCACCAGC
TGTCCTCGTACATGATGTGTTCTACCAACCAAGACCTTTACCAGCGTGCC
AAGTGGGAGGGCAAGGGCATCCTGTCGCGTGCCTTGGTCATGGAGCGCCT
ACAGACATTTATGCCGCCGTCGGTGATGATGTCGCCACGGCGCCTGCGCA
CCCTGCTGCAGCAGGCCGTGGAGCTGCAGAGCCAACACTGCCCCTGCCAC
GACATGGCGTGGGAGACGAATCTGGAGACAGTCTCGCTGCTCACCGACCA
CTGCTGCACCACGGACGGCTTTCCAATGCAAACTATTCAGATTCTCACCG
ACCATTGCGACGAGGTCTGGTTCTGCAAGTTCTCGCCCGATGGCCTCAAG
CTAGCGACGGGCAGCAAAGACTCCACTGTGATTATCTGGGATGTTGATCC
GTACAAGCTGACCCTTAAGCACCGTCGCGTTCTCGACGGTCAGGCCCAGC
TTAGCGTGAGCTTCGTCAGCTGGAGCCCCGACTCCAAGCTCATCCTTGTC
GGCGGCACCGAGGACTCCCATGAGCTCTACATCTGGAACGTGGACGACGG
CAAGCTAGTGGTCAAGTTCTCGCAGTCTCTGGAGGACAGCCTGGCCTGCG
GTGCCTTCAGTCGCGATGGCGCTCGATTCGTCTGCGGCGGCCAGAAGGGT
CAGCTTTACCTATGCGACCTCAACGGTACCATCGTGGACTCCTGGGAGGG
AGTGCGCGTAAACAGCATAGCCTTTCGGGCGGACAACAAAACGATCTTAG
CGGCGGATAATCATTACCGAATCAGAGGGTACAACTTTGATAGCCCGCGT
TCAGACTTTGATATTCTGAGGGAGCCACATCCCATAATGACCTTTAGTAT
CAACTCCGCCGACCGCTTGGCCTTGCTGAACGTCTCGAACCAAGGCCTTC
ACCTTTGGGACATCGAGGACAAGTGCCTTGTGCGCCGTTTCCAGGGAATA
CGTCAGAGCAACTTCGCCATCCACTCCTGCTTCGGCGGCGTTAACGAGAG
CTTCGTTGCCAGCGGCAGTGAGGACAAGGTTGTCTACATTTGGCACATCA
AGCGCGAGGAGCCGCTGGCCAAGCTGGCCGGGCACACTAAGACGGTGAAC
TGCGTGTCCTGGAATCCCGTGTACCCGTCCCTGCTGGCCAGCGCAAGCGA
TGACGCCACCGTGAGAATCTGGGGACCGAAGCCCAACGGCAGCAGCGCAA
CGACTGAGAGCGACGATTGCTCTTCTAGCTCGTCTTCGTCCTCCTGGAAT
ATGACTGCAAGCTTTCTAGACCAT
BO11263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-RJ | 1893 | CG7611-PJ | 1..1890 | 17..1906 | 9450 | 100 | Plus |
CG7611-RI | 1893 | CG7611-PI | 1..1890 | 17..1906 | 9450 | 100 | Plus |
CG7611-RA | 1893 | CG7611-PA | 1..1890 | 17..1906 | 9450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-RJ | 3001 | CG7611-RJ | 609..2499 | 16..1906 | 9455 | 100 | Plus |
CG7611-RI | 4464 | CG7611-RI | 2072..3962 | 16..1906 | 9455 | 100 | Plus |
CG7611-RA | 3810 | CG7611-RA | 1418..3308 | 16..1906 | 9455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21525982..21526938 | 474..1430 | 4785 | 100 | Plus |
3L | 28110227 | 3L | 21527183..21527661 | 1428..1906 | 2395 | 100 | Plus |
3L | 28110227 | 3L | 21525257..21525717 | 16..476 | 2305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:52:11 has no hits.
BO11263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:02 Download gff for
BO11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RG | 1..1893 | 17..1910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:52 Download gff for
BO11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RG | 941..2830 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:33 Download gff for
BO11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 1419..3308 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:02 Download gff for
BO11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RG | 933..2834 | 10..1911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:50 Download gff for
BO11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7611-RA | 1419..3308 | 17..1908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:50 Download gff for
BO11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21525258..21525716 | 17..475 | 100 | -> | Plus |
3L | 21525984..21526936 | 476..1428 | 100 | -> | Plus |
3L | 21527184..21527661 | 1429..1908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:33 Download gff for
BO11263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21518358..21518816 | 17..475 | 100 | -> | Plus |
arm_3L | 21519084..21520036 | 476..1428 | 100 | -> | Plus |
arm_3L | 21520284..21520761 | 1429..1908 | 99 | | Plus |
BO11263.pep Sequence
Translation from 16 to 1924
> BO11263.pep
MQSTSSTSSGSCSRPLEGSTLNSGGSAENVARDGGSGDDSVGIGDENPSG
SSAATNGHDSKHNGFIVNNNGSSSRIVDGENNRENTSCSGVQLDKSNQEI
IRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADS
DLKDLEPLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELT
PLQHNITRVHQLSSYMMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMP
PSVMMSPRRLRTLLQQAVELQSQHCPCHDMAWETNLETVSLLTDHCCTTD
GFPMQTIQILTDHCDEVWFCKFSPDGLKLATGSKDSTVIIWDVDPYKLTL
KHRRVLDGQAQLSVSFVSWSPDSKLILVGGTEDSHELYIWNVDDGKLVVK
FSQSLEDSLACGAFSRDGARFVCGGQKGQLYLCDLNGTIVDSWEGVRVNS
IAFRADNKTILAADNHYRIRGYNFDSPRSDFDILREPHPIMTFSINSADR
LALLNVSNQGLHLWDIEDKCLVRRFQGIRQSNFAIHSCFGGVNESFVASG
SEDKVVYIWHIKREEPLAKLAGHTKTVNCVSWNPVYPSLLASASDDATVR
IWGPKPNGSSATTESDDCSSSSSSSSWNMTASFLDH
BO11263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7611-PJ | 630 | CG7611-PJ | 1..630 | 1..630 | 3335 | 100 | Plus |
CG7611-PI | 630 | CG7611-PI | 1..630 | 1..630 | 3335 | 100 | Plus |
CG7611-PA | 630 | CG7611-PA | 1..630 | 1..630 | 3335 | 100 | Plus |
CG7611-PD | 630 | CG7611-PD | 1..630 | 1..630 | 3335 | 100 | Plus |
CG7611-PC | 630 | CG7611-PC | 1..630 | 1..630 | 3335 | 100 | Plus |