Clone BO11263 Report

Search the DGRC for BO11263

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG7611-RB
Protein status:BO11263.pep:
Sequenced Size:1924

Clone Sequence Records

BO11263.3prime Sequence

832 bp (680 high quality bases) assembled on 2006-04-19

> BO11263.3prime
ATGGTCTAGAAAGCTTGCAGTCATATTCCAGGAGGACGAAGACGAGCTAG
AAGAGCAATCGTCGCTCTCAGTCGTTGCGCTGCTGCCGTTGGGCTTCGGT
CCCCAGATTCTCACGGTGGCGTCATCGCTTGCGCTGGCCAGCAGGGACGG
GTACACGGGATTCCAGGACACGCAGTTCACCGTCTTAGTGTGCCCGGCCA
GCTTGGCCAGCGGCTCCTCGCGCTTGATGTGCCAAATGTAGACAACCTTG
TCCTCACTGCCGCTGGCAACGAAGCTCTCGTTAACGCCGCCGAAGCAGGA
GTGGATGGCGAAGTTGCTCTGACGTATTCCCTGGAAACGGCGCACAAGGC
ACTTGTCCTCGATGTCCCAAAGGTGAAGGCCTTGGTTCGAGACGTTCAGC
AAGGCCAAGCGGTCGGCGGAGTTGATACTAAAGGTCATTATGGGATGTGG
CTCCCTCAGAATATCAAAGTCTGAACGCGGGCTATCAAAGTTGTACCCTC
TGATTCGGTAATGATTATCCGCCGCTAAGATCGTTTTGTTGTCCGCCCGA
AAGGCTATGCTGTTTACGCGCACTCCCTCCCAGGAGTCCACGATGGTACC
GTTGAGGTCGCATAGGTAAAGCTGACCCTTCTGGCCGCCGCAGACGAATC
GAGCGCCATCGCGACTGAAGGCACCGCAGGCCCAGCTGTCCTCCAGAGAC
TGCGAGAACTTGACCACTAGCTTGCCGTCGTCCACGTTCCAGATGTAGAG
CTCATGAGAGTCCTCGGTGCCGCCGACCAAGATGAGCTTGGAGTCGGGGC
TCCAGCTGACGAAGCTCACGCTAAGCTGGGCC

BO11263.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-PE 1893 CG7611-RE 1077..1890 832..19 3945 99.3 Minus
CG7611-PF 1893 CG7611-RF 1077..1890 832..19 3945 99.3 Minus
CG7611-PG 1893 CG7611-RG 1077..1890 832..19 3945 99.3 Minus
CG7611-PB 1893 CG7611-RB 1077..1890 832..19 3945 99.3 Minus
CG7611-PH 1893 CG7611-RH 1077..1890 832..19 3945 99.3 Minus
CG7611-PC 1893 CG7611-RC 1077..1890 832..19 3945 99.3 Minus
CG7611-PD 1893 CG7611-RD 1077..1890 832..19 3945 99.3 Minus
CG7611-PA 1893 CG7611-RA 1077..1890 832..19 3945 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-RJ 3001 CG7611-RJ 1686..2499 832..19 3995 99.4 Minus
CG7611-RI 4464 CG7611-RI 3149..3962 832..19 3995 99.4 Minus
CG7611-RA 3810 CG7611-RA 2495..3308 832..19 3995 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21527183..21527661 497..19 2395 100 Minus
3L 28110227 3L 21526601..21526938 832..495 1615 98.5 Minus
Blast to na_te.dros performed on 2015-02-11 10:04:08 has no hits.

BO11263.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:26 Download gff for BO11263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-PH 1077..1893 15..832 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:42 Download gff for BO11263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-PA 1077..1893 15..832 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:33:05 Download gff for BO11263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 2495..3312 14..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:33 Download gff for BO11263.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 2495..3312 14..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:33 Download gff for BO11263.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21526601..21526936 497..832 98 -> Minus
3L 21527184..21527665 14..496 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:33:05 Download gff for BO11263.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21519701..21520036 497..832 98 -> Minus
arm_3L 21520284..21520765 14..496 99   Minus

BO11263.5prime Sequence

816 bp (770 high quality bases) assembled on 2006-04-19

> BO11263.5prime
GAAGTTATCAGTCGACATGCAGAGCACCAGTTCCACGTCGAGCGGCTCTT
GCTCCAGGCCCCTCGAGGGTTCCACACTCAATTCCGGCGGCAGTGCCGAG
AACGTGGCTCGCGATGGAGGCAGTGGCGATGACAGCGTCGGCATCGGTGA
TGAGAATCCATCGGGCAGCAGCGCCGCCACGAACGGACACGACTCCAAAC
ACAACGGCTTCATTGTCAACAATAACGGCAGCAGCAGTCGCATCGTCGAC
GGCGAGAACAATCGGGAAAACACCAGCTGCAGCGGTGTGCAGCTGGACAA
GTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTCG
GTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTG
GAACACCCCTCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTG
GTCAAAGGCAGATTCAGACCTTAAGGACCTAGAGCCACTAATCGACAATG
GGAAATTGGCAACGATCACCGAAATGAAGTTCATATTGCTGGAGCAAAAG
TATTTAGAGCATTTGGATGATGGCAATCCCTTGGACGCCCTTCACGTCCT
TCGCAGCGAGCTGACTCCCCTGCAGCACAACATAACGCGTGTGCACCAGC
TGTCCTCGTACATGATGTGTTCTACCAACCAAGACCTTTACCAGCGTGCC
AAGTGGGAGGGCAAGGGCATCCTGTCGCGTGCCTTGGTCATGGAGCGCCT
ACAGACATTTATGCCGCCGTCGGTGATGATGTCGCCCCGGGCGCCTGCGC
ACCCTGCTGCAGCAGG

BO11263.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-PE 1893 CG7611-RE 1..770 17..786 3850 100 Plus
CG7611-PF 1893 CG7611-RF 1..770 17..786 3850 100 Plus
CG7611-PG 1893 CG7611-RG 1..770 17..786 3850 100 Plus
CG7611-PB 1893 CG7611-RB 1..770 17..786 3850 100 Plus
CG7611-PH 1893 CG7611-RH 1..770 17..786 3850 100 Plus
CG7611-PC 1893 CG7611-RC 1..770 17..786 3850 100 Plus
CG7611-PD 1893 CG7611-RD 1..770 17..786 3850 100 Plus
CG7611-PA 1893 CG7611-RA 1..770 17..786 3850 100 Plus
CG7611-PE 1893 CG7611-RE 773..799 790..816 135 100 Plus
CG7611-PF 1893 CG7611-RF 773..799 790..816 135 100 Plus
CG7611-PG 1893 CG7611-RG 773..799 790..816 135 100 Plus
CG7611-PB 1893 CG7611-RB 773..799 790..816 135 100 Plus
CG7611-PH 1893 CG7611-RH 773..799 790..816 135 100 Plus
CG7611-PC 1893 CG7611-RC 773..799 790..816 135 100 Plus
CG7611-PD 1893 CG7611-RD 773..799 790..816 135 100 Plus
CG7611-PA 1893 CG7611-RA 773..799 790..816 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-RJ 3001 CG7611-RJ 609..1408 16..816 3965 99.8 Plus
CG7611-RI 4464 CG7611-RI 2072..2871 16..816 3965 99.8 Plus
CG7611-RA 3810 CG7611-RA 1418..2217 16..816 3965 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21525257..21525717 16..476 2305 100 Plus
3L 28110227 3L 21525982..21526323 474..816 1650 99.4 Plus
Blast to na_te.dros performed on 2015-02-04 04:47:56 has no hits.

BO11263.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:27 Download gff for BO11263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-PG 1..799 17..816 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:43 Download gff for BO11263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-PH 1..799 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:05:10 Download gff for BO11263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 1411..2217 10..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:39:07 Download gff for BO11263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 1411..2217 10..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:39:07 Download gff for BO11263.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21525250..21525716 10..475 99 -> Plus
3L 21525984..21526323 476..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:05:10 Download gff for BO11263.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21519084..21519423 476..816 99   Plus
arm_3L 21518350..21518816 10..475 99 -> Plus

BO11263.complete Sequence

1924 bp assembled on 2008-01-16

GenBank Submission: FJ632046

> BO11263.complete
GAAGTTATCAGTCGACATGCAGAGCACCAGTTCCACGTCGAGCGGCTCTT
GCTCCAGGCCCCTCGAGGGTTCCACACTCAATTCCGGCGGCAGTGCCGAG
AACGTGGCTCGCGATGGAGGCAGTGGCGATGACAGCGTCGGCATCGGTGA
TGAGAATCCATCGGGCAGCAGCGCCGCCACGAACGGACACGACTCCAAAC
ACAACGGCTTCATTGTCAACAATAACGGCAGCAGCAGTCGCATCGTCGAC
GGCGAGAACAATCGGGAAAACACCAGCTGCAGCGGTGTGCAGCTGGACAA
GTCCAACCAAGAGATCATCCGGCTGATCGGACAGTATCTGCATGACGTCG
GTCTCGATAAGTCAGTCCAAACGCTCATGTTGGAATCCGGATGCTACTTG
GAACACCCCTCTGCAACCAAGTTTAGGGAGCACGTCCTAATGGGTGACTG
GTCAAAGGCAGATTCAGACCTTAAGGACCTAGAGCCACTAATCGACAATG
GGAAATTGGCAACGATCACCGAAATGAAGTTCATATTGCTGGAGCAAAAG
TATTTAGAGCATTTGGATGATGGCAATCCCTTGGACGCCCTTCACGTCCT
TCGCAGCGAGCTGACTCCCCTGCAGCACAACATAACGCGTGTGCACCAGC
TGTCCTCGTACATGATGTGTTCTACCAACCAAGACCTTTACCAGCGTGCC
AAGTGGGAGGGCAAGGGCATCCTGTCGCGTGCCTTGGTCATGGAGCGCCT
ACAGACATTTATGCCGCCGTCGGTGATGATGTCGCCACGGCGCCTGCGCA
CCCTGCTGCAGCAGGCCGTGGAGCTGCAGAGCCAACACTGCCCCTGCCAC
GACATGGCGTGGGAGACGAATCTGGAGACAGTCTCGCTGCTCACCGACCA
CTGCTGCACCACGGACGGCTTTCCAATGCAAACTATTCAGATTCTCACCG
ACCATTGCGACGAGGTCTGGTTCTGCAAGTTCTCGCCCGATGGCCTCAAG
CTAGCGACGGGCAGCAAAGACTCCACTGTGATTATCTGGGATGTTGATCC
GTACAAGCTGACCCTTAAGCACCGTCGCGTTCTCGACGGTCAGGCCCAGC
TTAGCGTGAGCTTCGTCAGCTGGAGCCCCGACTCCAAGCTCATCCTTGTC
GGCGGCACCGAGGACTCCCATGAGCTCTACATCTGGAACGTGGACGACGG
CAAGCTAGTGGTCAAGTTCTCGCAGTCTCTGGAGGACAGCCTGGCCTGCG
GTGCCTTCAGTCGCGATGGCGCTCGATTCGTCTGCGGCGGCCAGAAGGGT
CAGCTTTACCTATGCGACCTCAACGGTACCATCGTGGACTCCTGGGAGGG
AGTGCGCGTAAACAGCATAGCCTTTCGGGCGGACAACAAAACGATCTTAG
CGGCGGATAATCATTACCGAATCAGAGGGTACAACTTTGATAGCCCGCGT
TCAGACTTTGATATTCTGAGGGAGCCACATCCCATAATGACCTTTAGTAT
CAACTCCGCCGACCGCTTGGCCTTGCTGAACGTCTCGAACCAAGGCCTTC
ACCTTTGGGACATCGAGGACAAGTGCCTTGTGCGCCGTTTCCAGGGAATA
CGTCAGAGCAACTTCGCCATCCACTCCTGCTTCGGCGGCGTTAACGAGAG
CTTCGTTGCCAGCGGCAGTGAGGACAAGGTTGTCTACATTTGGCACATCA
AGCGCGAGGAGCCGCTGGCCAAGCTGGCCGGGCACACTAAGACGGTGAAC
TGCGTGTCCTGGAATCCCGTGTACCCGTCCCTGCTGGCCAGCGCAAGCGA
TGACGCCACCGTGAGAATCTGGGGACCGAAGCCCAACGGCAGCAGCGCAA
CGACTGAGAGCGACGATTGCTCTTCTAGCTCGTCTTCGTCCTCCTGGAAT
ATGACTGCAAGCTTTCTAGACCAT

BO11263.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-RJ 1893 CG7611-PJ 1..1890 17..1906 9450 100 Plus
CG7611-RI 1893 CG7611-PI 1..1890 17..1906 9450 100 Plus
CG7611-RA 1893 CG7611-PA 1..1890 17..1906 9450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-RJ 3001 CG7611-RJ 609..2499 16..1906 9455 100 Plus
CG7611-RI 4464 CG7611-RI 2072..3962 16..1906 9455 100 Plus
CG7611-RA 3810 CG7611-RA 1418..3308 16..1906 9455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21525982..21526938 474..1430 4785 100 Plus
3L 28110227 3L 21527183..21527661 1428..1906 2395 100 Plus
3L 28110227 3L 21525257..21525717 16..476 2305 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:52:11 has no hits.

BO11263.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:02 Download gff for BO11263.complete
Subject Subject Range Query Range Percent Splice Strand
CG7611-RG 1..1893 17..1910 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:52 Download gff for BO11263.complete
Subject Subject Range Query Range Percent Splice Strand
CG7611-RG 941..2830 17..1908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:33 Download gff for BO11263.complete
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 1419..3308 17..1908 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:02 Download gff for BO11263.complete
Subject Subject Range Query Range Percent Splice Strand
CG7611-RG 933..2834 10..1911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:50 Download gff for BO11263.complete
Subject Subject Range Query Range Percent Splice Strand
CG7611-RA 1419..3308 17..1908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:50 Download gff for BO11263.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21525258..21525716 17..475 100 -> Plus
3L 21525984..21526936 476..1428 100 -> Plus
3L 21527184..21527661 1429..1908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:33 Download gff for BO11263.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21518358..21518816 17..475 100 -> Plus
arm_3L 21519084..21520036 476..1428 100 -> Plus
arm_3L 21520284..21520761 1429..1908 99   Plus

BO11263.pep Sequence

Translation from 16 to 1924

> BO11263.pep
MQSTSSTSSGSCSRPLEGSTLNSGGSAENVARDGGSGDDSVGIGDENPSG
SSAATNGHDSKHNGFIVNNNGSSSRIVDGENNRENTSCSGVQLDKSNQEI
IRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADS
DLKDLEPLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELT
PLQHNITRVHQLSSYMMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMP
PSVMMSPRRLRTLLQQAVELQSQHCPCHDMAWETNLETVSLLTDHCCTTD
GFPMQTIQILTDHCDEVWFCKFSPDGLKLATGSKDSTVIIWDVDPYKLTL
KHRRVLDGQAQLSVSFVSWSPDSKLILVGGTEDSHELYIWNVDDGKLVVK
FSQSLEDSLACGAFSRDGARFVCGGQKGQLYLCDLNGTIVDSWEGVRVNS
IAFRADNKTILAADNHYRIRGYNFDSPRSDFDILREPHPIMTFSINSADR
LALLNVSNQGLHLWDIEDKCLVRRFQGIRQSNFAIHSCFGGVNESFVASG
SEDKVVYIWHIKREEPLAKLAGHTKTVNCVSWNPVYPSLLASASDDATVR
IWGPKPNGSSATTESDDCSSSSSSSSWNMTASFLDH

BO11263.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7611-PJ 630 CG7611-PJ 1..630 1..630 3335 100 Plus
CG7611-PI 630 CG7611-PI 1..630 1..630 3335 100 Plus
CG7611-PA 630 CG7611-PA 1..630 1..630 3335 100 Plus
CG7611-PD 630 CG7611-PD 1..630 1..630 3335 100 Plus
CG7611-PC 630 CG7611-PC 1..630 1..630 3335 100 Plus