Clone BO11265 Report

Search the DGRC for BO11265

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptRanbp9-RA
Protein status:BO11265.pep: validated full length
Sequenced Size:3088

Clone Sequence Records

BO11265.3prime Sequence

752 bp (677 high quality bases) assembled on 2006-04-19

> BO11265.3prime
ATGGTCTAGAAAGCTTGCCTTCTGCTGGACCTTGCTGAGCAGGATGAGGC
GTTCACCCTCGGTGAGGTGTTCATAGAAAGTGGGAAAGTGTTCGTTCTGC
GTGAAGGTGGTAAGGAACTTCTGCAGGTTGTCGGCTATGTCGCCCTGGTA
GTTGGTTTCCTTCAGCAGCTCTTGCAACAGTTGTTCGTCCTCGGCGTTAT
CCTCGTCAGATTCGAACAGATCGGATATGTAACGCGGCTTGTCCGGATTT
CCGGGCGCATCCTCATCATCGCCATCCTCTTCGCTGTCCGTAAGAGGTTC
GTCGCTCTTGCCCTCCTGGAAGTGCTGGTACTCGGAGATCAAAACCTTGA
AGATCTTGACGAGAGCCGGAATTGTTACCCACTTCTGGGTTGTAGCTGCC
ACGGATCGAGTACGTCTGCGCGTGTCGGTGGGGTCGTCCACCAGTTCTTT
GAATGTTATTGTGGTCAAACGGTTGTCCTGAGTGGCAACACCATACTCGA
ACAGCTTGCACAGAGCCATGGTGGTGACCTTTCGCTCATAGTTTCCGAAA
AAGGAGTTCTGGCGGGAGAGCCAGTTTGTGAGTACAAACTGCATCGCTGG
CTCCCCGTTGGGTCCGGGAACGGTGGACAGAAAGTTGAGTACGGCGTCCA
TTTGCGTGAGGAACAAATGGGCGAAGATCAACACAAGATTCATTATCACT
TTTAGGCACTCGAGGTTCTGCATTTTGCTTATCACAGCCTTCAGCAGCAT
GT

BO11265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5252-PA 3057 Ranbp9-RA 2321..3054 752..19 3670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp9-RD 3243 CG5252-RD 2425..3158 752..19 3670 100 Minus
Ranbp9-RA 3311 CG5252-RA 2493..3226 752..19 3670 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11415546..11416057 530..19 2560 100 Minus
3R 32079331 3R 11415267..11415492 752..527 1130 100 Minus
Blast to na_te.dros performed on 2015-02-03 17:13:25 has no hits.

BO11265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:30 Download gff for BO11265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5252-PA 2321..3057 18..752 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:47 Download gff for BO11265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5252-PA 2321..3057 18..752 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:33:23 Download gff for BO11265.3prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 2493..3226 19..752 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:00:22 Download gff for BO11265.3prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 2493..3226 19..752 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:00:22 Download gff for BO11265.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11415267..11415490 529..752 100 -> Minus
3R 11415548..11416057 19..528 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:33:23 Download gff for BO11265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7240989..7241212 529..752 100 -> Minus
arm_3R 7241270..7241779 19..528 100   Minus

BO11265.5prime Sequence

788 bp (748 high quality bases) assembled on 2006-04-19

> BO11265.5prime
GAAGTTATCAGTCGACATGTCGCTGCAATTCCAAAACGACTGCGGGGACT
CCGTTAAGCAAGCCATCATCGAGGAGCTGCAGAACCTACTTAGCTCGGAC
ACAGGAGTCCTGCAGCAGACAGAAAAGAGGATCAAGCAGCTGGAGTACAC
GGAAGGCTATGGCGTCTACCTGTCCGAGATCATTATGAACCAGGCGCACG
AGCTGCCACTCCGTCAAATCGCGATCGTGATGCTCACTCGTTACGTGGAG
AACCACTGGACGGATGACGATGATGTTAAAAGGAAAGCCAACGGTTGTAT
GGCCAGCGAGCAGGCCAAGCGAACCATACGAAACATTCTGCCAAACGGAC
TGTATGATCCCAATTCAAAGATACGCTCCTCAGTCGCGCATACCATCTCC
ACCATAGCCGCCACGGATTACCCACATTGTTGGGCGGAGCTGTTCGACAT
CATTGTCAAATGCCTGGGCGGCAATGAGGATTCCATACACGGTGCCATGC
AGGTGCTGCAGGATTTCAGCTACGACGTGGAGCAAATCAAGGAACTGGGT
CCAGTAGTCATACCCGAAGTCTATCGCATCTTCGACTCCGAGCAAAATTA
CTCGATCAAAACAAGAGTTTCGGCCATTCGCATCTTGAAGCCACTTTTTG
CATCCATTGCTGCACTGATCACCAACAAAGAAGAGCAGAGCACCATGATG
AGCTCCATTTTGACAAACTTTATGGACAAGCTTATGCATTACCTGAGCAT
GAATAGCGGCGCCGTTTCCAGTTTCCTGCTTCGCACGG

BO11265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5252-PA 3057 Ranbp9-RA 1..772 17..788 3860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp9-RD 3243 CG5252-RD 105..876 17..788 3860 100 Plus
Ranbp9-RA 3311 CG5252-RA 173..944 17..788 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11412913..11413547 154..788 3175 100 Plus
3R 32079331 3R 11412694..11412833 17..156 700 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:59:13 has no hits.

BO11265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:31 Download gff for BO11265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5252-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:49 Download gff for BO11265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5252-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:31 Download gff for BO11265.5prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 171..944 14..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:09:10 Download gff for BO11265.5prime
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 171..944 14..788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:09:10 Download gff for BO11265.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11412692..11412832 14..155 99 -> Plus
3R 11412915..11413547 156..788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:31 Download gff for BO11265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7238414..7238554 14..155 99 -> Plus
arm_3R 7238637..7239269 156..788 100   Plus

BO11265.complete Sequence

3088 bp assembled on 2007-11-30

GenBank Submission: FJ632048

> BO11265.complete
GAAGTTATCAGTCGACATGTCGCTGCAATTCCAAAACGACTGCGGGGACT
CCGTTAAGCAAGCCATCATCGAGGAGCTGCAGAACCTACTTAGCTCGGAC
ACAGGAGTCCTGCAGCAGACAGAAAAGAGGATCAAGCAGCTGGAGTACAC
GGAAGGCTATGGCGTCTACCTGTCCGAGATCATTATGAACCAGGCGCACG
AGCTGCCACTCCGTCAAATCGCGATCGTGATGCTCACTCGTTACGTGGAG
AACCACTGGACGGATGACGATGATGTTAAAAGGAAAGCCAACGGTTGTAT
GGCCAGCGAGCAGGCCAAGCGAACCATACGAAACATTCTGCCAAACGGAC
TGTATGATCCCAATTCAAAGATACGCTCCTCAGTCGCGCATACCATCTCC
ACCATAGCCGCCACGGATTACCCACATTGTTGGGCGGAGCTGTTCGACAT
CATTGTCAAATGCCTGGGCGGCAATGAGGATTCCATACACGGTGCCATGC
AGGTGCTGCAGGATTTCAGCTACGACGTGGAGCAAATCAAGGAACTGGGT
CCAGTAGTCATACCCGAAGTCTATCGCATCTTCGACTCCGAGCAAAATTA
CTCGATCAAAACAAGAGTTTCGGCCATTCGCATCTTGAAGCCACTTTTTG
CATCCATTGCTGCACTGATCACCAACAAAGAAGAGCAGAGCACCATGATG
AGCTCCATTTTGACAAACTTTATGGACAAGCTTATGCATTACCTGAGCAT
GAATAGCGGCGCCGTTTCCAGTTTCCTGCTTCGCACGGAAATTATCAAGG
TGTTTACCCATTTGGTCAATGAGATGCCAAAGTACATCAACCCCTTTATG
GACCGTGTTCTGCCCATTGTCTGGCAGCTACTCACACAAATAGCCGAGAC
TTACGTGAAGGTGTCGGTGAATCAGACTGAGACAAGTCCGCTGGCCAGCG
GCGACAGCGAGGAGGATGACGAGCAGACCAATTTCCAATCACTGATCATC
CAGATCCTTGAGTTCATCAACTGCATACTGACATGCAACAAACTACGTGG
CAGCATCAAAAATGTGCTGGCCGACCTCATATACATAACCATTGTTTACA
TTCAGCTGAGCGAGGAGCAGTTGGAGGACTGGCATGATGATCCGGAGAAG
TTCGTGGATGATGAGGATGATGGCGGTGTGGAGCTCACGGTGCGCATGTG
CGGCCGTGATGTTCTCCTGGCTATTAACGACGAATTCGGAGCCAACGCAA
TTCAGCCATTGCAGGAGGCATTGGGCAGGCACTTTAGTGTGGCTGATGCA
GAAAAAGCGGCCAACAATCCCAACTGGTGGAAGATCCAGGAGGCCTGCAT
GGATGCCGTGCATGCTTTCCGCGACGTCATCCTCGCCGGCGACTCTACGT
TTGACCTCCTCAACTACTTGACCATAGTTCGGAATTTGCTTGTGCATCAA
GAATCTCCACCTCTTGTTGGTCGTGCCCTTTGGACGTTGAGCATCTACTC
CAAGTCGGACCTATACAATCCGCAGATGTTGACCGAGATTCTTGATGTCA
CGCTGTGCAGCCTGTCGCCGGAGAAGTCACACATCCTTAGAATCAGCGCA
GTGCGCACCCTGAATGGATTCCTGCAGGCGAACGAAACAATCGATGGAGA
GAAGCGAACTTTGTTGGTCTCAAAGCTGCCGGGTTTCCTAGACGGAATTA
TGGCTTTAGTGCCGGGATCCAAGGCAGCAGTCTTAGCACTGCTAATGGAA
GCCCTAACTTTCATGGTTAAATTCGATGCTGAGTTTGCCTTTGCTAGCCA
GGCAAAGATTACGCCGCTAGCCATCGCTGTATTCCTGAAATACACTGAAG
ATCCGTATGTGCTTGAAACAGTCCAGGATCTCATCAAAGCTCTGTGCCAG
CGCAAGGAGTGCCTGGGACCGCTACAGGAGAAGTTTATTCCAACGATTGT
TAGCATCCTGGGGCTGACAGGAGCTGCTTCCACGGAAAAGCAGGATATTG
CCCTAGACGTCCTTAACACAATCGTGCGCTACACGGAGCCGCCGCTGAAC
AATTCCCTGTTAGAGACCGCTTTTCCCGCCATTATAAACTGCGTTCTACA
CACGGACGACCATGCTGTCATGGTAGCTGGGGGCGAGTGCCTGCGCAGCT
TTATCAATGTCTCCCCGGAACAAATATGCAGCTACAAGAACGGCGAGGGC
ATCAACTGCATCATGCAAGTGGTGGCCACTGTTCTTCTGAATCCGATGAA
CAGCGAAATGACTGCGGCGGGCCAAATTGGACGTCTTGTTATCACTATTA
TCACCAAGATGGGAAGCATGCTCGGCCAGAATGTGGACATGCTGCTGAAG
GCTGTGATAAGCAAAATGCAGAACCTCGAGTGCCTAAAAGTGATAATGAA
TCTTGTGTTGATCTTCGCCCATTTGTTCCTCACGCAAATGGACGCCGTAC
TCAACTTTCTGTCCACCGTTCCCGGACCCAACGGGGAGCCAGCGATGCAG
TTTGTACTCACAAACTGGCTCTCCCGCCAGAACTCCTTTTTCGGAAACTA
TGAGCGAAAGGTCACCACCATGGCTCTGTGCAAGCTGTTCGAGTATGGTG
TTGCCACTCAGGACAACCGTTTGACCACAATAACATTCAAAGAACTGGTG
GACGACCCCACCGACACGCGCAGACGTACTCGATCCGTGGCAGCTACAAC
CCAGAAGTGGGTAACAATTCCGGCTCTCGTCAAGATCTTCAAGGTTTTGA
TCTCCGAGTACCAGCACTTCCAGGAGGGCAAGAGCGACGAACCTCTTACG
GACAGCGAAGAGGATGGCGATGATGAGGATGCGCCCGGAAATCCGGACAA
GCCGCGTTACATATCCGATCTGTTCGAATCTGACGAGGATAACGCCGAGG
ACGAACAACTGTTGCAAGAGCTGCTGAAGGAAACCAACTACCAGGGCGAC
ATAGCCGACAACCTGCAGAAGTTCCTTACCACCTTCACGCAGAACGAACA
CTTTCCCACTTTCTATGAACACCTCACCGAGGGTGAACGCCTCATCCTGC
TCAGCAAGGTCCAGCAGAAGGCAAGCTTTCTAGACCAT

BO11265.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp9-RD 3057 CG5252-PD 1..3054 17..3070 15270 100 Plus
Ranbp9-RA 3057 CG5252-PA 1..3054 17..3070 15270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp9-RD 3243 CG5252-RD 105..3158 17..3070 15270 100 Plus
Ranbp9-RA 3311 CG5252-RA 173..3226 17..3070 15270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11414702..11415492 1772..2562 3955 100 Plus
3R 32079331 3R 11412913..11413559 154..800 3235 100 Plus
3R 32079331 3R 11414090..11414642 1219..1771 2765 100 Plus
3R 32079331 3R 11415546..11416057 2559..3070 2560 100 Plus
3R 32079331 3R 11413613..11414033 800..1220 2105 100 Plus
3R 32079331 3R 11412694..11412833 17..156 700 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:51:27 has no hits.

BO11265.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:04 Download gff for BO11265.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 1..3057 17..3071 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:09:26 Download gff for BO11265.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 171..3226 14..3070 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:59 Download gff for BO11265.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 173..3226 17..3072 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:50 Download gff for BO11265.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 173..3226 17..3072 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:49 Download gff for BO11265.complete
Subject Subject Range Query Range Percent Splice Strand
Ranbp9-RA 173..3226 17..3072 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:49 Download gff for BO11265.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11414091..11414642 1220..1771 100 -> Plus
3R 11414702..11415490 1772..2560 100 -> Plus
3R 11412694..11412832 17..155 100 -> Plus
3R 11412915..11413559 156..800 100 -> Plus
3R 11413614..11414032 801..1219 100 -> Plus
3R 11415548..11416057 2561..3072 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:59 Download gff for BO11265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7238416..7238554 17..155 100 -> Plus
arm_3R 7238637..7239281 156..800 100 -> Plus
arm_3R 7239336..7239754 801..1219 100 -> Plus
arm_3R 7239813..7240364 1220..1771 100 -> Plus
arm_3R 7240424..7241212 1772..2560 100 -> Plus
arm_3R 7241270..7241779 2561..3072 99   Plus

BO11265.pep Sequence

Translation from 16 to 3088

> BO11265.pep
MSLQFQNDCGDSVKQAIIEELQNLLSSDTGVLQQTEKRIKQLEYTEGYGV
YLSEIIMNQAHELPLRQIAIVMLTRYVENHWTDDDDVKRKANGCMASEQA
KRTIRNILPNGLYDPNSKIRSSVAHTISTIAATDYPHCWAELFDIIVKCL
GGNEDSIHGAMQVLQDFSYDVEQIKELGPVVIPEVYRIFDSEQNYSIKTR
VSAIRILKPLFASIAALITNKEEQSTMMSSILTNFMDKLMHYLSMNSGAV
SSFLLRTEIIKVFTHLVNEMPKYINPFMDRVLPIVWQLLTQIAETYVKVS
VNQTETSPLASGDSEEDDEQTNFQSLIIQILEFINCILTCNKLRGSIKNV
LADLIYITIVYIQLSEEQLEDWHDDPEKFVDDEDDGGVELTVRMCGRDVL
LAINDEFGANAIQPLQEALGRHFSVADAEKAANNPNWWKIQEACMDAVHA
FRDVILAGDSTFDLLNYLTIVRNLLVHQESPPLVGRALWTLSIYSKSDLY
NPQMLTEILDVTLCSLSPEKSHILRISAVRTLNGFLQANETIDGEKRTLL
VSKLPGFLDGIMALVPGSKAAVLALLMEALTFMVKFDAEFAFASQAKITP
LAIAVFLKYTEDPYVLETVQDLIKALCQRKECLGPLQEKFIPTIVSILGL
TGAASTEKQDIALDVLNTIVRYTEPPLNNSLLETAFPAIINCVLHTDDHA
VMVAGGECLRSFINVSPEQICSYKNGEGINCIMQVVATVLLNPMNSEMTA
AGQIGRLVITIITKMGSMLGQNVDMLLKAVISKMQNLECLKVIMNLVLIF
AHLFLTQMDAVLNFLSTVPGPNGEPAMQFVLTNWLSRQNSFFGNYERKVT
TMALCKLFEYGVATQDNRLTTITFKELVDDPTDTRRRTRSVAATTQKWVT
IPALVKIFKVLISEYQHFQEGKSDEPLTDSEEDGDDEDAPGNPDKPRYIS
DLFESDEDNAEDEQLLQELLKETNYQGDIADNLQKFLTTFTQNEHFPTFY
EHLTEGERLILLSKVQQKASFLDH

BO11265.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Ranbp9-PD 1018 CG5252-PD 1..1018 1..1018 5206 100 Plus
Ranbp9-PA 1018 CG5252-PA 1..1018 1..1018 5206 100 Plus