Clone Sequence Records
BO11267.3prime Sequence
812 bp (693 high quality bases) assembled on 2006-04-19
> BO11267.3prime
ATGGTCTAGAAAGCTTGCTCTCTGTCTGTCTGGAAGTGATTCGAACTGCG
CTGTCTCGTCCTGTCCATTCCCTTGGTCATCGGTGGCTTTCTCAGGATTA
TAGTCGTAAAACACCTGCGAAGTATCGCCCTGGACATTCACATCGATTGG
CGCACCCACATCATCAATCGGTGCTGAGCTGAAATCGCCTCGTGGCGGGT
CCTTCGGACTGTCCACCATGATCTGAACTGTGGGCATCGCGCACGTGTCC
ATTGAGCTCTCTACCGAGCCCGTTGTGATGCGTATCTGAGGCGGCGGCTG
CTTGCTAAGCATGTCCAGGCCGACACCAAAACCATTTCCGTTGCCGCTCA
CGGACGGGCTGCTCTCATCCTCCTCCTTATACTCTTCGCTCTCGCGGTGT
ACCAGTACGTGGACCAGAGTTGCGTTGTCCGGACGCAGGCTCAGCGAGTG
CGGATGCGTCTGTTGCTCTGGCGACGGCCTGGTGACGATCACCTCGGGGG
CTGACGCCTCAGAGACAAAAGCGTTCTTGTTTACTCTTAAAGCGCTTTGT
GCTGACAAACCTCTTTCTAGGGGCGGTTTCTTGCGAATGAAACTAGAGGC
GCGCTTACGTGATGGAGCCGACCCACCCCCCACCGCCTGGTGTCGGTCGC
TTGTCGGAAGCGGAGGTGGCTGCTGGGCCACACCCAGTGGCTGGGGCGGT
GGCGGTGGAAGAGGCCGTGCCGGAAGTGGAGGCGGAGTTTGAGGTGGTGT
TGGTCGTGTTGTTCATTGCGGTTTTTCTATGGTACTGAAAGTGAGGTTAA
CCTGTCACCGAC
BO11267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18506-PA | 942 | CG18506-RA | 307..939 | 651..19 | 3165 | 100 | Minus |
CG18506-PA | 942 | CG18506-RA | 178..307 | 781..652 | 575 | 97.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:26:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-RP | 11475 | CG34405-RP | 8560..9351 | 812..19 | 3830 | 99 | Minus |
NaCP60E-RO | 12475 | CG34405-RO | 9560..10351 | 812..19 | 3830 | 99 | Minus |
NaCP60E-RN | 12573 | CG34405-RN | 9658..10449 | 812..19 | 3830 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24917648..24918141 | 512..19 | 2470 | 100 | Minus |
2R | 25286936 | 2R | 24917320..24917577 | 771..513 | 1200 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:26:29 has no hits.
BO11267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:34 Download gff for
BO11267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18506-PA | 148..942 | 16..812 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:54 Download gff for
BO11267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18506-PA | 148..942 | 16..812 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 20:01:28 Download gff for
BO11267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9658..10455 | 12..812 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:44:03 Download gff for
BO11267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9658..10455 | 12..812 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:44:03 Download gff for
BO11267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24917648..24918147 | 12..512 | 99 | | Minus |
2R | 24917320..24917577 | 513..771 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 20:01:28 Download gff for
BO11267.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20804843..20805100 | 513..771 | 98 | -> | Minus |
arm_2R | 20805171..20805670 | 12..512 | 99 | | Minus |
BO11267.5prime Sequence
795 bp (690 high quality bases) assembled on 2006-04-19
> BO11267.5prime
GAAGTTATCAGTCGACATGCTCGTCTCAGGTGCCGACGAAGTAGTCAAGG
ATATAAAACAGCAAAACGACGAGCTGGGCAAACGCGGTAGCATTTTTGTG
GAAGCGCCTAGAGCAAGTCGTCGCCGAAGCTTTTATAATTTCTTTTTGCG
TCATCAGGATGCTGTCGATGACAGCTTAACCTCACCTTCAGTACATAGAA
AAACCGCAATGAACAACACGACCAACACCACCTCAAACTCCGCCTCCACC
TCCGGCACGGCCTCCTCCACCGCCACCGCCCCAGCCACTGGGTGTGGCCC
AGCAGCCACCTCCGCCTCCGACAGCGACCGACACCAGGCGGTGGGGGGTG
GGTCGGCTCCATCACGTAAGCGCGCCTCTAGTTTCATTCGCAAGAAACCG
CCCCTAGAAAGAGGTTTGTCAGCACAAAGCGCTTTAAGAGTAAACAAGAA
CGCTTTTGTCTCTGAGGCGTCAGCCCCCGAGGTGATCGTCACCAGGCCGT
CGCCAGAGCAACAGACGCATCCGCACTCGCTGAGCCTGCGTCCGGACAAC
GCAACTCTGGTCCACGTACTGGTACACCGCGAGAGCGAAGAGTATAAGGA
GGAGGATGAGAGCAGCCCGTCCGTGAGCGGCAACGGAAATGGTTTTGGTG
TCGGCCTGGACATGCTTAGCAAGCAGCCGCCGCCTCAGATACGCATCACA
ACGGGCTCGGTAGAGAGCTCAATGGACACGTGCGCGATGCCCACAGTTCA
GATCATGGTGGACAGTCCGAAAGACCCGCCACGAGGCGATTTCAG
BO11267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18506-PA | 942 | CG18506-RA | 1..779 | 17..795 | 3870 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:19:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-RP | 11475 | CG34405-RP | 8413..9191 | 17..795 | 3880 | 99.9 | Plus |
NaCP60E-RO | 12475 | CG34405-RO | 9413..10191 | 17..795 | 3880 | 99.9 | Plus |
NaCP60E-RN | 12573 | CG34405-RN | 9511..10289 | 17..795 | 3880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24917648..24917981 | 462..795 | 1655 | 99.7 | Plus |
2R | 25286936 | 2R | 24917320..24917577 | 204..461 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 24916771..24916890 | 84..203 | 600 | 100 | Plus |
2R | 25286936 | 2R | 24915395..24915462 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 05:19:21 has no hits.
BO11267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:35 Download gff for
BO11267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18506-PA | 1..779 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:55 Download gff for
BO11267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18506-PA | 1..779 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:50:52 Download gff for
BO11267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9511..10289 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:28:15 Download gff for
BO11267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9511..10289 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:28:15 Download gff for
BO11267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24915395..24915462 | 17..84 | 100 | -> | Plus |
2R | 24916772..24916890 | 85..203 | 100 | -> | Plus |
2R | 24917320..24917577 | 204..461 | 100 | -> | Plus |
2R | 24917648..24917981 | 462..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:50:52 Download gff for
BO11267.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20802918..20802985 | 17..84 | 100 | -> | Plus |
arm_2R | 20804295..20804413 | 85..203 | 100 | -> | Plus |
arm_2R | 20804843..20805100 | 204..461 | 100 | -> | Plus |
arm_2R | 20805171..20805504 | 462..795 | 99 | | Plus |
BO11267.complete Sequence
973 bp assembled on 2006-10-10
GenBank Submission: FJ632049
> BO11267.complete
GAAGTTATCAGTCGACATGCTCGTCTCAGGTGCCGACGAAGTAGTCAAGG
ATATAAAACAGCAAAACGACGAGCTGGGCAAACGCGGTAGCATTTTTGTG
GAAGCGCCTAGAGCAAGTCGTCGCCGAAGCTTTTATAATTTCTTTTTGCG
TCATCAGGATGCTGTCGATGACAGCTTAACCTCACCTTCAGTACATAGAA
AAACCGCAATGAACAACACGACCAACACCACCTCAAACTCCGCCTCCACC
TCCGGCACGGCCTCCTCCACCGCCACCGCCCCAGCCACTGGGTGTGGCCC
AGCAGCCACCTCCGCCTCCGACAGCGACCGACACCAGGCGGTGGGGGGTG
GGTCGGCTCCATCACGTAAGCGCGCCTCTAGTTTCATTCGCAAGAAACCG
CCCCTAGAAAGAGGTTTGTCAGCACAAAGCGCTTTAAGAGTAAACAAGAA
CGCTTTTGTCTCTGAGGCGTCAGCCCCCGAGGTGATCGTCACCAGGCCGT
CGCCAGAGCAACAGACGCATCCGCACTCGCTGAGCCTGCGTCCGGACAAC
GCAACTCTGGTCCACGTACTGGTACACCGCGAGAGCGAAGAGTATAAGGA
GGAGGATGAGAGCAGCCCGTCCGTGAGCGGCAACGGAAATGGTTTTGGTG
TCGGCCTGGACATGCTTAGCAAGCAGCCGCCGCCTCAGATACGCATCACA
ACGGGCTCGGTAGAGAGCTCAATGGACACGTGCGCGATGCCCACAGTTCA
GATCATGGTGGACAGTCCGAAGGACCCGCCACGAGGCGATTTCAGCTCAG
CACCGATTGATGATGTGGGTGCGCCAATCGATGTGAATGTCCAGGGCGAT
ACTTCGCAGGTGTTTTACGACTATAATCCTGAGAAAGCCACCGATGACCA
AGGGAATGGACAGGACGAGACAGCGCAGTTCGAATCACTTCCAGACAGAC
AGAGAGCAAGCTTTCTAGACCAT
BO11267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-RI | 8139 | CG34405-PI | 7198..8136 | 17..955 | 4695 | 100 | Plus |
NaCP60E-RH | 8535 | CG34405-PH | 7594..8532 | 17..955 | 4695 | 100 | Plus |
NaCP60E-RG | 8535 | CG34405-PG | 7594..8532 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-RP | 11475 | CG34405-RP | 8413..9351 | 17..955 | 4695 | 100 | Plus |
NaCP60E-RO | 12475 | CG34405-RO | 9413..10351 | 17..955 | 4695 | 100 | Plus |
NaCP60E-RN | 12573 | CG34405-RN | 9511..10449 | 17..955 | 4695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24917648..24918141 | 462..955 | 2470 | 100 | Plus |
2R | 25286936 | 2R | 24917320..24917577 | 204..461 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 24916771..24916890 | 84..203 | 600 | 100 | Plus |
2R | 25286936 | 2R | 24915395..24915462 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:21:35 has no hits.
BO11267.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:33 Download gff for
BO11267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RC | 7525..8466 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:40 Download gff for
BO11267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RC | 7925..8869 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:27 Download gff for
BO11267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9511..10449 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:33 Download gff for
BO11267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RC | 7925..8869 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:55 Download gff for
BO11267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NaCP60E-RN | 9511..10449 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:55 Download gff for
BO11267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24915395..24915462 | 17..84 | 100 | -> | Plus |
2R | 24916772..24916890 | 85..203 | 100 | -> | Plus |
2R | 24917320..24917577 | 204..461 | 100 | -> | Plus |
2R | 24917648..24918141 | 462..957 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:27 Download gff for
BO11267.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20802918..20802985 | 17..84 | 100 | -> | Plus |
arm_2R | 20804295..20804413 | 85..203 | 100 | -> | Plus |
arm_2R | 20804843..20805100 | 204..461 | 100 | -> | Plus |
arm_2R | 20805171..20805664 | 462..957 | 99 | | Plus |
BO11267.pep Sequence
Translation from 16 to 973
> BO11267.pep
MLVSGADEVVKDIKQQNDELGKRGSIFVEAPRASRRRSFYNFFLRHQDAV
DDSLTSPSVHRKTAMNNTTNTTSNSASTSGTASSTATAPATGCGPAATSA
SDSDRHQAVGGGSAPSRKRASSFIRKKPPLERGLSAQSALRVNKNAFVSE
ASAPEVIVTRPSPEQQTHPHSLSLRPDNATLVHVLVHRESEEYKEEDESS
PSVSGNGNGFGVGLDMLSKQPPPQIRITTGSVESSMDTCAMPTVQIMVDS
PKDPPRGDFSSAPIDDVGAPIDVNVQGDTSQVFYDYNPEKATDDQGNGQD
ETAQFESLPDRQRASFLDH
BO11267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NaCP60E-PI | 2712 | CG34405-PI | 2400..2712 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PH | 2844 | CG34405-PH | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PG | 2844 | CG34405-PG | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PM | 2896 | CG34405-PM | 2532..2844 | 1..313 | 1605 | 100 | Plus |
NaCP60E-PK | 2833 | CG34405-PK | 2537..2833 | 1..313 | 1500 | 94.6 | Plus |