Clone Sequence Records
BO11268.3prime Sequence
687 bp (665 high quality bases) assembled on 2006-04-19
> BO11268.3prime
ATGGTCTAGAAAGCTTGCCTTAAAGAAGAGCTTGTGCAACTGCTTGGACT
TCACGGGCACAAATTCTTGCATTTCATCCGGGTTGGTCCAGAAGGCCACA
CAGTTTTGAAGCTCAGTGCAAGGCGCCTCCCGATGGATGTACTCTTTCAG
GATAAAGTCGTTCTCGATCTCGTGGTGGAAGCGGGTGTCGTGCATCCGGA
TTAGCACGTGGTCCACGCGCAGAAAGTGGCGCAAAAGGATGAAGAAGCCA
GAGGGCATCACGCGGATTCGCACGCTCATCACCGATATTCCGTGGTCGTG
CAGCTCATCCTCGAACAGAGTTAAATCGTGGTAGAAGATGATGTTCTCGC
GCTGCATCAGCTTGAACTTGTTCAGCGTCTGATTCGTGGTCTCCGATCGC
ACTTTTTCGTTCATGGTGCCCTGGTAGGTGGAGGTGAATGTCCAGTCGAA
AGGCTTGAACTTCTCCTCCATTGTCTGCTCGTTACGCGTTTCCCGCCACT
CCTGAGCACAAGCGACCTCCAGCGGCTGCTTCCCATTGTCCACCAGCGCC
AGCGCGTCCATGGGGCAGAACTCGAGAGTGGCGCCGTCCTTGTGCTGTAA
CACCAGCCGATTCTTGTGGAACACCATGTCGGGCAGGTGGGGCAGCTGCA
GGGAGTGCTGGTAGTGGCAGAGGTCGCAGCGGTCGGC
BO11268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-PA | 819 | CG9578-RA | 148..816 | 687..19 | 3345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-RA | 1094 | CG9578-RA | 275..943 | 687..19 | 3345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20171130..20171375 | 264..19 | 1230 | 100 | Minus |
X | 23542271 | X | 20170845..20171065 | 485..265 | 1105 | 100 | Minus |
X | 23542271 | X | 20170556..20170758 | 687..485 | 1015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:57:53 has no hits.
BO11268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:36 Download gff for
BO11268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-PA | 148..819 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:56 Download gff for
BO11268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-PA | 148..819 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:59:00 Download gff for
BO11268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 275..943 | 19..687 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:42 Download gff for
BO11268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 275..943 | 19..687 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:42 Download gff for
BO11268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20171130..20171375 | 19..264 | 100 | | Minus |
X | 20170846..20171065 | 265..484 | 100 | -> | Minus |
X | 20170556..20170758 | 485..687 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:59:00 Download gff for
BO11268.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20064589..20064791 | 485..687 | 100 | -> | Minus |
arm_X | 20064879..20065098 | 265..484 | 100 | -> | Minus |
arm_X | 20065163..20065408 | 19..264 | 100 | | Minus |
BO11268.5prime Sequence
764 bp (684 high quality bases) assembled on 2006-04-19
> BO11268.5prime
GAAGTTATCAGTCGACATGTCCATGGAGGAGTGCTTTGTGCCCCGGCTGC
CGGTGGACAGCGAGTTCATCCAGTTCCACGACTGGGCCATCAAGTATGAG
AAGTCGCACATCCTGAAGAGCAGCTGCCAACTGGGCACCGCCAAGTGCTG
TCCCAAGGACTCGGCCGACCGCTGCGACCTCTGCCACTACCAGCACTCCC
TGCAGCTGCCCCACCTGCCCGACATGGTGTTCCACAAGAATCGGCTGGTG
TTACAGCACAAGGACGGCGCCACTCTCGAGTTCTGCCCCATGGACGCGCT
GGCGCTGGTGGACAATGGGAAGCAGCCGCTGGAGGTCGCTTGTGCTCAGG
AGTGGCGGGAAACGCGTAACGAGCAGACAATGGAGGAGAAGTTCAAGCCT
TTCGACTGGACATTCACCTCCACCTACCAGGGCACCATGAACGAAAAAGT
GCGATCGGAGACCACGAATCAGACGCTGAACAAGTTCAAGCTGATGCAGC
GCGAGAACATCATCTTCTACCACGATTTAACTCTGTTCGAGGATGAGCTG
CACGACCACGGAATATCGGTGATGAGCGTGCGAATCCGCGTGATGCCCTC
TGGCTTCTTCATCCTTTTGCGCCACTTTCTGCGCGTGGACCACGTGCTAA
TCCGGATGCACGACACCCGCTTCCACCACGAGATCGAGAACGACTTTATC
CTGAAAGAGTACATCCATCGGGAGGCGCCTTGCACTGAGCTTCAAAACTG
TGTGGCCTTCTGGA
BO11268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-PA | 819 | CG9578-RA | 1..748 | 17..764 | 3740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-RA | 1094 | CG9578-RA | 128..875 | 17..764 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20170422..20170758 | 30..366 | 1685 | 100 | Plus |
X | 23542271 | X | 20170845..20171065 | 366..586 | 1105 | 100 | Plus |
X | 23542271 | X | 20171130..20171307 | 587..764 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:46:41 has no hits.
BO11268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:36 Download gff for
BO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:58 Download gff for
BO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:22:34 Download gff for
BO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 118..874 | 6..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:47 Download gff for
BO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 118..874 | 6..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:47 Download gff for
BO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20170424..20170758 | 32..366 | 100 | -> | Plus |
X | 20170846..20171065 | 367..586 | 100 | -> | Plus |
X | 20171130..20171306 | 587..763 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:22:34 Download gff for
BO11268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20064457..20064791 | 32..366 | 100 | -> | Plus |
arm_X | 20064879..20065098 | 367..586 | 100 | -> | Plus |
arm_X | 20065163..20065339 | 587..763 | 100 | | Plus |
BO11268.complete Sequence
850 bp assembled on 2007-10-17
GenBank Submission: FJ632050
> BO11268.complete
GAAGTTATCAGTCGACATGTCCATGGAGGAGTGCTTTGTGCCCCGGCTGC
CGGTGGACAGCGAGTTCATCCAGTTCCACGACTGGGCCATCAAGTATGAG
AAGTCGCACATCCTGAAGAGCAGCTGCCAACTGGGCACCGCCAAGTGCTG
TCCCAAGGACTCGGCCGACCGCTGCGACCTCTGCCACTACCAGCACTCCC
TGCAGCTGCCCCACCTGCCCGACATGGTGTTCCACAAGAATCGGCTGGTG
TTACAGCACAAGGACGGCGCCACTCTCGAGTTCTGCCCCATGGACGCGCT
GGCGCTGGTGGACAATGGGAAGCAGCCGCTGGAGGTCGCTTGTGCTCAGG
AGTGGCGGGAAACGCGTAACGAGCAGACAATGGAGGAGAAGTTCAAGCCT
TTCGACTGGACATTCACCTCCACCTACCAGGGCACCATGAACGAAAAAGT
GCGATCGGAGACCACGAATCAGACGCTGAACAAGTTCAAGCTGATGCAGC
GCGAGAACATCATCTTCTACCACGATTTAACTCTGTTCGAGGATGAGCTG
CACGACCACGGAATATCGGTGATGAGCGTGCGAATCCGCGTGATGCCCTC
TGGCTTCTTCATCCTTTTGCGCCACTTTCTGCGCGTGGACCACGTGCTAA
TCCGGATGCACGACACCCGCTTCCACCACGAGATCGAGAACGACTTTATC
CTGAAAGAGTACATCCATCGGGAGGCGCCTTGCACTGAGCTTCAAAACTG
TGTGGCCTTCTGGACCAACCCGGATGAAATGCAAGAATTTGTGCCCGTGA
AGTCCAAGCAGTTGCACAAGCTCTTCTTTAAGGCAAGCTTTCTAGACCAT
BO11268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-RA | 819 | CG9578-PA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-RA | 1094 | CG9578-RA | 128..943 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20170422..20170758 | 30..366 | 1685 | 100 | Plus |
X | 23542271 | X | 20171130..20171375 | 587..832 | 1230 | 100 | Plus |
X | 23542271 | X | 20170845..20171065 | 366..586 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:55:53 has no hits.
BO11268.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:05 Download gff for
BO11268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 1..819 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:09:28 Download gff for
BO11268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 98..923 | 6..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:27 Download gff for
BO11268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 128..943 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:32 Download gff for
BO11268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 108..923 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:54 Download gff for
BO11268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9578-RA | 128..943 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:54 Download gff for
BO11268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20170424..20170758 | 32..366 | 100 | -> | Plus |
X | 20170846..20171065 | 367..586 | 100 | -> | Plus |
X | 20171130..20171375 | 587..834 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:27 Download gff for
BO11268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20064457..20064791 | 32..366 | 100 | -> | Plus |
arm_X | 20064879..20065098 | 367..586 | 100 | -> | Plus |
arm_X | 20065163..20065408 | 587..834 | 99 | | Plus |
BO11268.pep Sequence
Translation from 16 to 850
> BO11268.pep
MSMEECFVPRLPVDSEFIQFHDWAIKYEKSHILKSSCQLGTAKCCPKDSA
DRCDLCHYQHSLQLPHLPDMVFHKNRLVLQHKDGATLEFCPMDALALVDN
GKQPLEVACAQEWRETRNEQTMEEKFKPFDWTFTSTYQGTMNEKVRSETT
NQTLNKFKLMQRENIIFYHDLTLFEDELHDHGISVMSVRIRVMPSGFFIL
LRHFLRVDHVLIRMHDTRFHHEIENDFILKEYIHREAPCTELQNCVAFWT
NPDEMQEFVPVKSKQLHKLFFKASFLDH
BO11268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9578-PA | 272 | CG9578-PA | 1..272 | 1..272 | 1486 | 100 | Plus |