Clone BO11268 Report

Search the DGRC for BO11268

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG9578-RA
Protein status:BO11268.pep: validated full length
Sequenced Size:850

Clone Sequence Records

BO11268.3prime Sequence

687 bp (665 high quality bases) assembled on 2006-04-19

> BO11268.3prime
ATGGTCTAGAAAGCTTGCCTTAAAGAAGAGCTTGTGCAACTGCTTGGACT
TCACGGGCACAAATTCTTGCATTTCATCCGGGTTGGTCCAGAAGGCCACA
CAGTTTTGAAGCTCAGTGCAAGGCGCCTCCCGATGGATGTACTCTTTCAG
GATAAAGTCGTTCTCGATCTCGTGGTGGAAGCGGGTGTCGTGCATCCGGA
TTAGCACGTGGTCCACGCGCAGAAAGTGGCGCAAAAGGATGAAGAAGCCA
GAGGGCATCACGCGGATTCGCACGCTCATCACCGATATTCCGTGGTCGTG
CAGCTCATCCTCGAACAGAGTTAAATCGTGGTAGAAGATGATGTTCTCGC
GCTGCATCAGCTTGAACTTGTTCAGCGTCTGATTCGTGGTCTCCGATCGC
ACTTTTTCGTTCATGGTGCCCTGGTAGGTGGAGGTGAATGTCCAGTCGAA
AGGCTTGAACTTCTCCTCCATTGTCTGCTCGTTACGCGTTTCCCGCCACT
CCTGAGCACAAGCGACCTCCAGCGGCTGCTTCCCATTGTCCACCAGCGCC
AGCGCGTCCATGGGGCAGAACTCGAGAGTGGCGCCGTCCTTGTGCTGTAA
CACCAGCCGATTCTTGTGGAACACCATGTCGGGCAGGTGGGGCAGCTGCA
GGGAGTGCTGGTAGTGGCAGAGGTCGCAGCGGTCGGC

BO11268.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-PA 819 CG9578-RA 148..816 687..19 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-RA 1094 CG9578-RA 275..943 687..19 3345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20171130..20171375 264..19 1230 100 Minus
X 23542271 X 20170845..20171065 485..265 1105 100 Minus
X 23542271 X 20170556..20170758 687..485 1015 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:57:53 has no hits.

BO11268.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:36 Download gff for BO11268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-PA 148..819 18..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:56 Download gff for BO11268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-PA 148..819 18..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:59:00 Download gff for BO11268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 275..943 19..687 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:42 Download gff for BO11268.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 275..943 19..687 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:42 Download gff for BO11268.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20171130..20171375 19..264 100   Minus
X 20170846..20171065 265..484 100 -> Minus
X 20170556..20170758 485..687 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:59:00 Download gff for BO11268.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20064589..20064791 485..687 100 -> Minus
arm_X 20064879..20065098 265..484 100 -> Minus
arm_X 20065163..20065408 19..264 100   Minus

BO11268.5prime Sequence

764 bp (684 high quality bases) assembled on 2006-04-19

> BO11268.5prime
GAAGTTATCAGTCGACATGTCCATGGAGGAGTGCTTTGTGCCCCGGCTGC
CGGTGGACAGCGAGTTCATCCAGTTCCACGACTGGGCCATCAAGTATGAG
AAGTCGCACATCCTGAAGAGCAGCTGCCAACTGGGCACCGCCAAGTGCTG
TCCCAAGGACTCGGCCGACCGCTGCGACCTCTGCCACTACCAGCACTCCC
TGCAGCTGCCCCACCTGCCCGACATGGTGTTCCACAAGAATCGGCTGGTG
TTACAGCACAAGGACGGCGCCACTCTCGAGTTCTGCCCCATGGACGCGCT
GGCGCTGGTGGACAATGGGAAGCAGCCGCTGGAGGTCGCTTGTGCTCAGG
AGTGGCGGGAAACGCGTAACGAGCAGACAATGGAGGAGAAGTTCAAGCCT
TTCGACTGGACATTCACCTCCACCTACCAGGGCACCATGAACGAAAAAGT
GCGATCGGAGACCACGAATCAGACGCTGAACAAGTTCAAGCTGATGCAGC
GCGAGAACATCATCTTCTACCACGATTTAACTCTGTTCGAGGATGAGCTG
CACGACCACGGAATATCGGTGATGAGCGTGCGAATCCGCGTGATGCCCTC
TGGCTTCTTCATCCTTTTGCGCCACTTTCTGCGCGTGGACCACGTGCTAA
TCCGGATGCACGACACCCGCTTCCACCACGAGATCGAGAACGACTTTATC
CTGAAAGAGTACATCCATCGGGAGGCGCCTTGCACTGAGCTTCAAAACTG
TGTGGCCTTCTGGA

BO11268.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-PA 819 CG9578-RA 1..748 17..764 3740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-RA 1094 CG9578-RA 128..875 17..764 3740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20170422..20170758 30..366 1685 100 Plus
X 23542271 X 20170845..20171065 366..586 1105 100 Plus
X 23542271 X 20171130..20171307 587..764 890 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:46:41 has no hits.

BO11268.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:36 Download gff for BO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:24:58 Download gff for BO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:22:34 Download gff for BO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 118..874 6..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:47 Download gff for BO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 118..874 6..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:47 Download gff for BO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20170424..20170758 32..366 100 -> Plus
X 20170846..20171065 367..586 100 -> Plus
X 20171130..20171306 587..763 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:22:34 Download gff for BO11268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20064457..20064791 32..366 100 -> Plus
arm_X 20064879..20065098 367..586 100 -> Plus
arm_X 20065163..20065339 587..763 100   Plus

BO11268.complete Sequence

850 bp assembled on 2007-10-17

GenBank Submission: FJ632050

> BO11268.complete
GAAGTTATCAGTCGACATGTCCATGGAGGAGTGCTTTGTGCCCCGGCTGC
CGGTGGACAGCGAGTTCATCCAGTTCCACGACTGGGCCATCAAGTATGAG
AAGTCGCACATCCTGAAGAGCAGCTGCCAACTGGGCACCGCCAAGTGCTG
TCCCAAGGACTCGGCCGACCGCTGCGACCTCTGCCACTACCAGCACTCCC
TGCAGCTGCCCCACCTGCCCGACATGGTGTTCCACAAGAATCGGCTGGTG
TTACAGCACAAGGACGGCGCCACTCTCGAGTTCTGCCCCATGGACGCGCT
GGCGCTGGTGGACAATGGGAAGCAGCCGCTGGAGGTCGCTTGTGCTCAGG
AGTGGCGGGAAACGCGTAACGAGCAGACAATGGAGGAGAAGTTCAAGCCT
TTCGACTGGACATTCACCTCCACCTACCAGGGCACCATGAACGAAAAAGT
GCGATCGGAGACCACGAATCAGACGCTGAACAAGTTCAAGCTGATGCAGC
GCGAGAACATCATCTTCTACCACGATTTAACTCTGTTCGAGGATGAGCTG
CACGACCACGGAATATCGGTGATGAGCGTGCGAATCCGCGTGATGCCCTC
TGGCTTCTTCATCCTTTTGCGCCACTTTCTGCGCGTGGACCACGTGCTAA
TCCGGATGCACGACACCCGCTTCCACCACGAGATCGAGAACGACTTTATC
CTGAAAGAGTACATCCATCGGGAGGCGCCTTGCACTGAGCTTCAAAACTG
TGTGGCCTTCTGGACCAACCCGGATGAAATGCAAGAATTTGTGCCCGTGA
AGTCCAAGCAGTTGCACAAGCTCTTCTTTAAGGCAAGCTTTCTAGACCAT

BO11268.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-RA 819 CG9578-PA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-RA 1094 CG9578-RA 128..943 17..832 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20170422..20170758 30..366 1685 100 Plus
X 23542271 X 20171130..20171375 587..832 1230 100 Plus
X 23542271 X 20170845..20171065 366..586 1105 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:55:53 has no hits.

BO11268.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:05 Download gff for BO11268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 1..819 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:09:28 Download gff for BO11268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 98..923 6..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:27 Download gff for BO11268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 128..943 17..834 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:32 Download gff for BO11268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 108..923 17..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:54 Download gff for BO11268.complete
Subject Subject Range Query Range Percent Splice Strand
CG9578-RA 128..943 17..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:54 Download gff for BO11268.complete
Subject Subject Range Query Range Percent Splice Strand
X 20170424..20170758 32..366 100 -> Plus
X 20170846..20171065 367..586 100 -> Plus
X 20171130..20171375 587..834 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:27 Download gff for BO11268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20064457..20064791 32..366 100 -> Plus
arm_X 20064879..20065098 367..586 100 -> Plus
arm_X 20065163..20065408 587..834 99   Plus

BO11268.pep Sequence

Translation from 16 to 850

> BO11268.pep
MSMEECFVPRLPVDSEFIQFHDWAIKYEKSHILKSSCQLGTAKCCPKDSA
DRCDLCHYQHSLQLPHLPDMVFHKNRLVLQHKDGATLEFCPMDALALVDN
GKQPLEVACAQEWRETRNEQTMEEKFKPFDWTFTSTYQGTMNEKVRSETT
NQTLNKFKLMQRENIIFYHDLTLFEDELHDHGISVMSVRIRVMPSGFFIL
LRHFLRVDHVLIRMHDTRFHHEIENDFILKEYIHREAPCTELQNCVAFWT
NPDEMQEFVPVKSKQLHKLFFKASFLDH

BO11268.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9578-PA 272 CG9578-PA 1..272 1..272 1486 100 Plus