Clone Sequence Records
BO11270.3prime Sequence
808 bp (753 high quality bases) assembled on 2006-04-19
> BO11270.3prime
ATGGTCTAGAAAGCTTGCTGTGTTAGGATTGGACAGGACGCGCGCCATTT
CGCGATATCGTTGTAGCATTGGAGCGTAGATTTCCTCGCTGTCCTTGTGT
GGTTCGCATACAAGGCTCAGTTTGTTACTTGTCAGACTTAGGATATAATC
TCGGTAACAGAGAGGCGTCACCCCATCACCTGCCTCTTGAAGGTACAGAG
CGTAGGCGGATCGATAAGCGGCTCCCAGTAGGGCAGCCTCAAATCCTTCA
TCCTGGATATGGACGGGAGCATTGAACACATCGGCAATTGTTTGCAGGAT
TGATTTGTTAACAGATGCGCCTCCTGTGACAAGGATTTGTGTCTCGGGTC
CGAATTTGTAGCCAAGGTCTTCAGCCACAGCCCGGTGATGCAGCATCTGA
CCTTCAACTAGGGCTCGAATTTCGATTTGGGGCGAGCTGAATTTGATTAC
ACCCCTAGCCGCGTCCGGGGAACTGGGATCCATTTCCCTGTTCCATCGCA
GAATACCCTGCGCCTTGGGAATGATTTCCATGTCGTTAAAGTGCACGGCC
ATGTTCCCAAAGTTTCCACGGGGCGTGGAGTCGAGATACTCATTGAATTT
ATCCCAATCGCCGCCGGTTGTCTTCTTGTTCATTTCCTCACGGACCAATG
AAGCATTTCTAAAACATAGAAGGCCCATGAATTCTTCCGTTTCAGTTGGA
TGGCAGAGTATATGACCCTCCTCCCAGTTTAGCGGCTCCTTCAAGCTCAT
CATTAGGGTGTCACTTGTGCCCATGGAAATGGTAAGCCAGCTGCTGCCCA
CCAACATT
BO11270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3534-PA | 1659 | CG3534-RA | 867..1656 | 808..19 | 3950 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3534-RA | 1979 | CG3534-RA | 1010..1799 | 808..19 | 3950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16999033..16999269 | 255..19 | 1185 | 100 | Minus |
3R | 32079331 | 3R | 16998350..16998572 | 665..443 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 16998787..16998977 | 442..252 | 955 | 100 | Minus |
3R | 32079331 | 3R | 16998149..16998292 | 808..665 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:14:22 has no hits.
BO11270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:41 Download gff for
BO11270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-PA | 867..1659 | 15..808 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:03 Download gff for
BO11270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-PA | 867..1659 | 15..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:34:46 Download gff for
BO11270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-RA | 1010..1808 | 9..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:20 Download gff for
BO11270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-RA | 1010..1808 | 9..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:58:20 Download gff for
BO11270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16998149..16998292 | 665..808 | 100 | -> | Minus |
3R | 16998351..16998572 | 443..664 | 100 | -> | Minus |
3R | 16998787..16998976 | 253..442 | 100 | -> | Minus |
3R | 16999036..16999278 | 9..252 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:34:46 Download gff for
BO11270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12824758..12825000 | 9..252 | 98 | | Minus |
arm_3R | 12823871..12824014 | 665..808 | 100 | -> | Minus |
arm_3R | 12824073..12824294 | 443..664 | 100 | -> | Minus |
arm_3R | 12824509..12824698 | 253..442 | 100 | -> | Minus |
BO11270.5prime Sequence
840 bp (797 high quality bases) assembled on 2006-04-19
> BO11270.5prime
GAAGTTATCAGTCGACATGGGTCCGCCAAAGCAGCTGAAACGAACCTTTC
TTGGCTTCGACTTGAGCACGCAAAAGCTCAAAGCCGTCCTGCTGGGCTCC
AGTTTGGAGGTGGTTGCCGCGGCTGAAGTGAAATTCGACACCGACTTGCC
GGAGTTCCGGACCACCGGTGGAGCCAACGCTGGATCCATCAAAAATGAAT
ACTTTGTACAACCAGTGATGTGGGTGAAGGCCATGGACATTGTCCTGGAC
CGACTGGTTATGCAGCAAGCGGATCTTAGCACCGTAGCTGCCATCAGTGG
CTCCGGACAGCAGCACGGATCGCTCTACTGGTCCAAACATGGAATCAACA
CGCTGCAAAACCTCGATTCCGAGAAGTTCCTTCACGCACAAATCGACGAC
TCCGCCTTTGTGGTAAATCGTACTCCGATTTGGATGGACGCCACCACCAC
CAAACAGTGCCTAGAGATGGAGATGGCTGTTGGTGGCAAACTTAACATGG
TGGAACTGACGGGCTCGAAGTGCTACGAACGTTTTACGGGTCCCCAAATT
AGAAAGATATATCAGCAACGCTGCCACGCCTACGAAGAGGCCAACCGAAT
CTCATTGGTCAGCAGTTTTATATCATCGCTATTTCTGGGCTCCGTCGCTC
CAATTGACTTCAGTGATGGTTCCGGCATGAATCTGCTGGACATCCGCAAG
AAGAACTGGTCCAAAGAATGCCTAAATGTTTGTGCACCCGATTTGGACAA
GCGCCTGGACATTCCGGTCAGTCCAAATTCAATTTTAGGCAACGTCTCTC
CGTACTTTGTGGAGCGCTTTAGTTTTTCGCCCGATTGCAA
BO11270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3534-PA | 1659 | CG3534-RA | 1..824 | 17..840 | 4095 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3534-RA | 1979 | CG3534-RA | 142..967 | 15..840 | 4115 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16997465..16998106 | 199..840 | 3195 | 99.8 | Plus |
3R | 32079331 | 3R | 16997051..16997174 | 75..198 | 620 | 100 | Plus |
3R | 32079331 | 3R | 16996587..16996648 | 15..76 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 05:25:53 has no hits.
BO11270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:42 Download gff for
BO11270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:04 Download gff for
BO11270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:51:37 Download gff for
BO11270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-RA | 134..965 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:28:57 Download gff for
BO11270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-RA | 134..965 | 9..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:28:57 Download gff for
BO11270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16996579..16996648 | 9..76 | 95 | -> | Plus |
3R | 16997053..16997174 | 77..198 | 100 | -> | Plus |
3R | 16997465..16998104 | 199..838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:51:37 Download gff for
BO11270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12822301..12822370 | 9..76 | 95 | -> | Plus |
arm_3R | 12822775..12822896 | 77..198 | 100 | -> | Plus |
arm_3R | 12823187..12823826 | 199..838 | 99 | | Plus |
BO11270.complete Sequence
1690 bp assembled on 2008-01-16
GenBank Submission: FJ632051
> BO11270.complete
GAAGTTATCAGTCGACATGGGTCCGCCAAAGCAGCTGAAACGAACCTTTC
TTGGCTTCGACTTGAGCACGCAAAAGCTCAAAGCCGTCCTGCTGGGCTCC
AGTTTGGAGGTGGTTGCCGCGGCTGAAGTGAAATTCGACACCGACTTGCC
GGAGTTCCGGACCACCGGTGGAGCCAACGCTGGATCCATCAAAAATGAAT
ACTTTGTACAACCAGTGATGTGGGTGAAGGCCATGGACATTGTCCTGGAC
CGACTGGTTATGCAGCAAGCGGATCTTAGCACCGTAGCTGCCATCAGTGG
CTCCGGACAGCAGCACGGATCGCTCTACTGGTCCAAACATGGAATCAACA
CGCTGCAAAACCTCGATTCCGAGAAGTTCCTTCACGCACAAATCGACGAC
TCCGCCTTTGTGGTAAATCGTACTCCGATTTGGATGGACGCCACCACCAC
CAAACAGTGCCTAGAGATGGAGATGGCTGTTGGTGGCAAACTTAACATGG
TGGAACTGACGGGCTCGAAGTGCTACGAACGTTTTACGGGTCCCCAAATT
AGAAAGATATATCAGCAACGCTGCCACGCCTACGAAGAGGCCAACCGAAT
CTCATTGGTCAGCAGTTTTATATCATCGCTATTTCTGGGCTCCGTCGCTC
CAATTGACTTCAGTGATGGTTCCGGCATGAATCTGCTGGACATCCGCAAG
AAGAACTGGTCCAAAGAATGCCTAAATGTTTGTGCACCCGATTTGGACAA
GCGCCTGGACATTCCGGTCAGTCCAAATTCGATTTTAGGCAACGTCTCTC
CGTACTTTGTGGAGCGCTTTAGTTTTTCGCCCGATTGCAAAGTGGCTGCT
AGCACGGGGGACAATCCTTCGGCGCTGTCTGGAATGTTGGTGGGCAGCAG
CTGGCTTACCATTTCCATGGGCACAAGTGACACCCTAATGATGAGCTTGA
AGGAGCCGCTAAACTGGGAGGAGGGTCATATACTCTGCCATCCAACTGAA
ACGGAAGAATTCATGGGCCTTCTATGTTTTAGAAATGCTTCATTGGTCCG
TGAGGAAATGAACAAGAAGACAACCGGCGGCGATTGGGATAAATTCAATG
AGTATCTCGACTCCACGCCCCGTGGAAACTTTGGGAACATGGCCGTGCAC
TTTAACGACATGGAAATCATTCCCAAGGCGCAGGGTATTCTGCGATGGAA
CAGGGAAATGGATCCCAGTTCCCCGGACGCGGCTAGGGGTGTAATCAAAT
TCAGCTCGCCCCAAATCGAAATTCGAGCCCTAGTTGAAGGTCAGATGCTG
CATCACCGGGCTGTGGCTGAAGACCTTGGCTACAAATTCGGACCCGAGAC
ACAAATCCTTGTCACAGGAGGCGCATCTGTTAACAAATCAATCCTGCAAA
CAATTGCCGATGTGTTCAATGCTCCCGTCCATATCCAGGATGAAGGATTT
GAGGCTGCCCTACTGGGAGCCGCTTATCGATCCGCCTACGCTCTGTACCT
TCAAGAGGCAGGTGATGGGGTGACGCCTCTCTGTTACCGAGATTATATCC
TAAGTCTGACAAGTAACAAACTGAGCCTTGTATGCGAACCACACAAGGAC
AGCGAGGAAATCTACGCTCCAATGCTACAACGATATCGCGAAATGGCGCG
CGTCCTGTCCAATCCTAACACAGCAAGCTTTCTAGACCAT
BO11270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3534-RA | 1659 | CG3534-PA | 1..1656 | 17..1672 | 8280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3534-RA | 1979 | CG3534-RA | 142..1799 | 15..1672 | 8290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16997465..16998292 | 199..1026 | 4140 | 100 | Plus |
3R | 32079331 | 3R | 16999033..16999269 | 1436..1672 | 1185 | 100 | Plus |
3R | 32079331 | 3R | 16998350..16998572 | 1026..1248 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 16998787..16998977 | 1249..1439 | 955 | 100 | Plus |
3R | 32079331 | 3R | 16997051..16997174 | 75..198 | 620 | 100 | Plus |
3R | 32079331 | 3R | 16996587..16996648 | 15..76 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:45:18 has no hits.
BO11270.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:06 Download gff for
BO11270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-RA | 1..1659 | 17..1676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:21 Download gff for
BO11270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-RA | 138..1793 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:52 Download gff for
BO11270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-RA | 144..1799 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:06 Download gff for
BO11270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-RA | 128..1802 | 9..1682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:36 Download gff for
BO11270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3534-RA | 144..1799 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:36 Download gff for
BO11270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16996589..16996648 | 17..76 | 100 | -> | Plus |
3R | 16997053..16997174 | 77..198 | 100 | -> | Plus |
3R | 16997465..16998292 | 199..1026 | 100 | -> | Plus |
3R | 16998351..16998572 | 1027..1248 | 100 | -> | Plus |
3R | 16998787..16998976 | 1249..1438 | 100 | -> | Plus |
3R | 16999036..16999269 | 1439..1674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:52 Download gff for
BO11270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12824073..12824294 | 1027..1248 | 100 | -> | Plus |
arm_3R | 12824509..12824698 | 1249..1438 | 100 | -> | Plus |
arm_3R | 12822311..12822370 | 17..76 | 100 | -> | Plus |
arm_3R | 12822775..12822896 | 77..198 | 100 | -> | Plus |
arm_3R | 12823187..12824014 | 199..1026 | 100 | -> | Plus |
arm_3R | 12824758..12824991 | 1439..1674 | 99 | | Plus |
BO11270.pep Sequence
Translation from 16 to 1690
> BO11270.pep
MGPPKQLKRTFLGFDLSTQKLKAVLLGSSLEVVAAAEVKFDTDLPEFRTT
GGANAGSIKNEYFVQPVMWVKAMDIVLDRLVMQQADLSTVAAISGSGQQH
GSLYWSKHGINTLQNLDSEKFLHAQIDDSAFVVNRTPIWMDATTTKQCLE
MEMAVGGKLNMVELTGSKCYERFTGPQIRKIYQQRCHAYEEANRISLVSS
FISSLFLGSVAPIDFSDGSGMNLLDIRKKNWSKECLNVCAPDLDKRLDIP
VSPNSILGNVSPYFVERFSFSPDCKVAASTGDNPSALSGMLVGSSWLTIS
MGTSDTLMMSLKEPLNWEEGHILCHPTETEEFMGLLCFRNASLVREEMNK
KTTGGDWDKFNEYLDSTPRGNFGNMAVHFNDMEIIPKAQGILRWNREMDP
SSPDAARGVIKFSSPQIEIRALVEGQMLHHRAVAEDLGYKFGPETQILVT
GGASVNKSILQTIADVFNAPVHIQDEGFEAALLGAAYRSAYALYLQEAGD
GVTPLCYRDYILSLTSNKLSLVCEPHKDSEEIYAPMLQRYREMARVLSNP
NTASFLDH
BO11270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3534-PA | 552 | CG3534-PA | 1..552 | 1..552 | 2876 | 100 | Plus |
CG3544-PB | 572 | CG3544-PB | 13..567 | 10..555 | 1339 | 45.6 | Plus |
CG3544-PA | 572 | CG3544-PA | 13..567 | 10..555 | 1339 | 45.6 | Plus |