Clone BO11270 Report

Search the DGRC for BO11270

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG3534-RA
Protein status:BO11270.pep:
Sequenced Size:1690

Clone Sequence Records

BO11270.3prime Sequence

808 bp (753 high quality bases) assembled on 2006-04-19

> BO11270.3prime
ATGGTCTAGAAAGCTTGCTGTGTTAGGATTGGACAGGACGCGCGCCATTT
CGCGATATCGTTGTAGCATTGGAGCGTAGATTTCCTCGCTGTCCTTGTGT
GGTTCGCATACAAGGCTCAGTTTGTTACTTGTCAGACTTAGGATATAATC
TCGGTAACAGAGAGGCGTCACCCCATCACCTGCCTCTTGAAGGTACAGAG
CGTAGGCGGATCGATAAGCGGCTCCCAGTAGGGCAGCCTCAAATCCTTCA
TCCTGGATATGGACGGGAGCATTGAACACATCGGCAATTGTTTGCAGGAT
TGATTTGTTAACAGATGCGCCTCCTGTGACAAGGATTTGTGTCTCGGGTC
CGAATTTGTAGCCAAGGTCTTCAGCCACAGCCCGGTGATGCAGCATCTGA
CCTTCAACTAGGGCTCGAATTTCGATTTGGGGCGAGCTGAATTTGATTAC
ACCCCTAGCCGCGTCCGGGGAACTGGGATCCATTTCCCTGTTCCATCGCA
GAATACCCTGCGCCTTGGGAATGATTTCCATGTCGTTAAAGTGCACGGCC
ATGTTCCCAAAGTTTCCACGGGGCGTGGAGTCGAGATACTCATTGAATTT
ATCCCAATCGCCGCCGGTTGTCTTCTTGTTCATTTCCTCACGGACCAATG
AAGCATTTCTAAAACATAGAAGGCCCATGAATTCTTCCGTTTCAGTTGGA
TGGCAGAGTATATGACCCTCCTCCCAGTTTAGCGGCTCCTTCAAGCTCAT
CATTAGGGTGTCACTTGTGCCCATGGAAATGGTAAGCCAGCTGCTGCCCA
CCAACATT

BO11270.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-PA 1659 CG3534-RA 867..1656 808..19 3950 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-RA 1979 CG3534-RA 1010..1799 808..19 3950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16999033..16999269 255..19 1185 100 Minus
3R 32079331 3R 16998350..16998572 665..443 1115 100 Minus
3R 32079331 3R 16998787..16998977 442..252 955 100 Minus
3R 32079331 3R 16998149..16998292 808..665 720 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:14:22 has no hits.

BO11270.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:41 Download gff for BO11270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-PA 867..1659 15..808 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:03 Download gff for BO11270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-PA 867..1659 15..808 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:34:46 Download gff for BO11270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 1010..1808 9..808 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:58:20 Download gff for BO11270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 1010..1808 9..808 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:58:20 Download gff for BO11270.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16998149..16998292 665..808 100 -> Minus
3R 16998351..16998572 443..664 100 -> Minus
3R 16998787..16998976 253..442 100 -> Minus
3R 16999036..16999278 9..252 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:34:46 Download gff for BO11270.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12824758..12825000 9..252 98   Minus
arm_3R 12823871..12824014 665..808 100 -> Minus
arm_3R 12824073..12824294 443..664 100 -> Minus
arm_3R 12824509..12824698 253..442 100 -> Minus

BO11270.5prime Sequence

840 bp (797 high quality bases) assembled on 2006-04-19

> BO11270.5prime
GAAGTTATCAGTCGACATGGGTCCGCCAAAGCAGCTGAAACGAACCTTTC
TTGGCTTCGACTTGAGCACGCAAAAGCTCAAAGCCGTCCTGCTGGGCTCC
AGTTTGGAGGTGGTTGCCGCGGCTGAAGTGAAATTCGACACCGACTTGCC
GGAGTTCCGGACCACCGGTGGAGCCAACGCTGGATCCATCAAAAATGAAT
ACTTTGTACAACCAGTGATGTGGGTGAAGGCCATGGACATTGTCCTGGAC
CGACTGGTTATGCAGCAAGCGGATCTTAGCACCGTAGCTGCCATCAGTGG
CTCCGGACAGCAGCACGGATCGCTCTACTGGTCCAAACATGGAATCAACA
CGCTGCAAAACCTCGATTCCGAGAAGTTCCTTCACGCACAAATCGACGAC
TCCGCCTTTGTGGTAAATCGTACTCCGATTTGGATGGACGCCACCACCAC
CAAACAGTGCCTAGAGATGGAGATGGCTGTTGGTGGCAAACTTAACATGG
TGGAACTGACGGGCTCGAAGTGCTACGAACGTTTTACGGGTCCCCAAATT
AGAAAGATATATCAGCAACGCTGCCACGCCTACGAAGAGGCCAACCGAAT
CTCATTGGTCAGCAGTTTTATATCATCGCTATTTCTGGGCTCCGTCGCTC
CAATTGACTTCAGTGATGGTTCCGGCATGAATCTGCTGGACATCCGCAAG
AAGAACTGGTCCAAAGAATGCCTAAATGTTTGTGCACCCGATTTGGACAA
GCGCCTGGACATTCCGGTCAGTCCAAATTCAATTTTAGGCAACGTCTCTC
CGTACTTTGTGGAGCGCTTTAGTTTTTCGCCCGATTGCAA

BO11270.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-PA 1659 CG3534-RA 1..824 17..840 4095 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-RA 1979 CG3534-RA 142..967 15..840 4115 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16997465..16998106 199..840 3195 99.8 Plus
3R 32079331 3R 16997051..16997174 75..198 620 100 Plus
3R 32079331 3R 16996587..16996648 15..76 310 100 Plus
Blast to na_te.dros performed on 2015-02-10 05:25:53 has no hits.

BO11270.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:42 Download gff for BO11270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-PA 1..822 17..838 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:04 Download gff for BO11270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-PA 1..822 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:51:37 Download gff for BO11270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 134..965 9..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:28:57 Download gff for BO11270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 134..965 9..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:28:57 Download gff for BO11270.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16996579..16996648 9..76 95 -> Plus
3R 16997053..16997174 77..198 100 -> Plus
3R 16997465..16998104 199..838 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:51:37 Download gff for BO11270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12822301..12822370 9..76 95 -> Plus
arm_3R 12822775..12822896 77..198 100 -> Plus
arm_3R 12823187..12823826 199..838 99   Plus

BO11270.complete Sequence

1690 bp assembled on 2008-01-16

GenBank Submission: FJ632051

> BO11270.complete
GAAGTTATCAGTCGACATGGGTCCGCCAAAGCAGCTGAAACGAACCTTTC
TTGGCTTCGACTTGAGCACGCAAAAGCTCAAAGCCGTCCTGCTGGGCTCC
AGTTTGGAGGTGGTTGCCGCGGCTGAAGTGAAATTCGACACCGACTTGCC
GGAGTTCCGGACCACCGGTGGAGCCAACGCTGGATCCATCAAAAATGAAT
ACTTTGTACAACCAGTGATGTGGGTGAAGGCCATGGACATTGTCCTGGAC
CGACTGGTTATGCAGCAAGCGGATCTTAGCACCGTAGCTGCCATCAGTGG
CTCCGGACAGCAGCACGGATCGCTCTACTGGTCCAAACATGGAATCAACA
CGCTGCAAAACCTCGATTCCGAGAAGTTCCTTCACGCACAAATCGACGAC
TCCGCCTTTGTGGTAAATCGTACTCCGATTTGGATGGACGCCACCACCAC
CAAACAGTGCCTAGAGATGGAGATGGCTGTTGGTGGCAAACTTAACATGG
TGGAACTGACGGGCTCGAAGTGCTACGAACGTTTTACGGGTCCCCAAATT
AGAAAGATATATCAGCAACGCTGCCACGCCTACGAAGAGGCCAACCGAAT
CTCATTGGTCAGCAGTTTTATATCATCGCTATTTCTGGGCTCCGTCGCTC
CAATTGACTTCAGTGATGGTTCCGGCATGAATCTGCTGGACATCCGCAAG
AAGAACTGGTCCAAAGAATGCCTAAATGTTTGTGCACCCGATTTGGACAA
GCGCCTGGACATTCCGGTCAGTCCAAATTCGATTTTAGGCAACGTCTCTC
CGTACTTTGTGGAGCGCTTTAGTTTTTCGCCCGATTGCAAAGTGGCTGCT
AGCACGGGGGACAATCCTTCGGCGCTGTCTGGAATGTTGGTGGGCAGCAG
CTGGCTTACCATTTCCATGGGCACAAGTGACACCCTAATGATGAGCTTGA
AGGAGCCGCTAAACTGGGAGGAGGGTCATATACTCTGCCATCCAACTGAA
ACGGAAGAATTCATGGGCCTTCTATGTTTTAGAAATGCTTCATTGGTCCG
TGAGGAAATGAACAAGAAGACAACCGGCGGCGATTGGGATAAATTCAATG
AGTATCTCGACTCCACGCCCCGTGGAAACTTTGGGAACATGGCCGTGCAC
TTTAACGACATGGAAATCATTCCCAAGGCGCAGGGTATTCTGCGATGGAA
CAGGGAAATGGATCCCAGTTCCCCGGACGCGGCTAGGGGTGTAATCAAAT
TCAGCTCGCCCCAAATCGAAATTCGAGCCCTAGTTGAAGGTCAGATGCTG
CATCACCGGGCTGTGGCTGAAGACCTTGGCTACAAATTCGGACCCGAGAC
ACAAATCCTTGTCACAGGAGGCGCATCTGTTAACAAATCAATCCTGCAAA
CAATTGCCGATGTGTTCAATGCTCCCGTCCATATCCAGGATGAAGGATTT
GAGGCTGCCCTACTGGGAGCCGCTTATCGATCCGCCTACGCTCTGTACCT
TCAAGAGGCAGGTGATGGGGTGACGCCTCTCTGTTACCGAGATTATATCC
TAAGTCTGACAAGTAACAAACTGAGCCTTGTATGCGAACCACACAAGGAC
AGCGAGGAAATCTACGCTCCAATGCTACAACGATATCGCGAAATGGCGCG
CGTCCTGTCCAATCCTAACACAGCAAGCTTTCTAGACCAT

BO11270.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-RA 1659 CG3534-PA 1..1656 17..1672 8280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-RA 1979 CG3534-RA 142..1799 15..1672 8290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16997465..16998292 199..1026 4140 100 Plus
3R 32079331 3R 16999033..16999269 1436..1672 1185 100 Plus
3R 32079331 3R 16998350..16998572 1026..1248 1115 100 Plus
3R 32079331 3R 16998787..16998977 1249..1439 955 100 Plus
3R 32079331 3R 16997051..16997174 75..198 620 100 Plus
3R 32079331 3R 16996587..16996648 15..76 310 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:45:18 has no hits.

BO11270.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:06 Download gff for BO11270.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 1..1659 17..1676 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:21 Download gff for BO11270.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 138..1793 17..1674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:52 Download gff for BO11270.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 144..1799 17..1674 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:06 Download gff for BO11270.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 128..1802 9..1682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:36 Download gff for BO11270.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 144..1799 17..1674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:36 Download gff for BO11270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16996589..16996648 17..76 100 -> Plus
3R 16997053..16997174 77..198 100 -> Plus
3R 16997465..16998292 199..1026 100 -> Plus
3R 16998351..16998572 1027..1248 100 -> Plus
3R 16998787..16998976 1249..1438 100 -> Plus
3R 16999036..16999269 1439..1674 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:52 Download gff for BO11270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12824073..12824294 1027..1248 100 -> Plus
arm_3R 12824509..12824698 1249..1438 100 -> Plus
arm_3R 12822311..12822370 17..76 100 -> Plus
arm_3R 12822775..12822896 77..198 100 -> Plus
arm_3R 12823187..12824014 199..1026 100 -> Plus
arm_3R 12824758..12824991 1439..1674 99   Plus

BO11270.pep Sequence

Translation from 16 to 1690

> BO11270.pep
MGPPKQLKRTFLGFDLSTQKLKAVLLGSSLEVVAAAEVKFDTDLPEFRTT
GGANAGSIKNEYFVQPVMWVKAMDIVLDRLVMQQADLSTVAAISGSGQQH
GSLYWSKHGINTLQNLDSEKFLHAQIDDSAFVVNRTPIWMDATTTKQCLE
MEMAVGGKLNMVELTGSKCYERFTGPQIRKIYQQRCHAYEEANRISLVSS
FISSLFLGSVAPIDFSDGSGMNLLDIRKKNWSKECLNVCAPDLDKRLDIP
VSPNSILGNVSPYFVERFSFSPDCKVAASTGDNPSALSGMLVGSSWLTIS
MGTSDTLMMSLKEPLNWEEGHILCHPTETEEFMGLLCFRNASLVREEMNK
KTTGGDWDKFNEYLDSTPRGNFGNMAVHFNDMEIIPKAQGILRWNREMDP
SSPDAARGVIKFSSPQIEIRALVEGQMLHHRAVAEDLGYKFGPETQILVT
GGASVNKSILQTIADVFNAPVHIQDEGFEAALLGAAYRSAYALYLQEAGD
GVTPLCYRDYILSLTSNKLSLVCEPHKDSEEIYAPMLQRYREMARVLSNP
NTASFLDH

BO11270.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-PA 552 CG3534-PA 1..552 1..552 2876 100 Plus
CG3544-PB 572 CG3544-PB 13..567 10..555 1339 45.6 Plus
CG3544-PA 572 CG3544-PA 13..567 10..555 1339 45.6 Plus