Clone Sequence Records
BO11273.3prime Sequence
737 bp (695 high quality bases) assembled on 2006-04-19
> BO11273.3prime
ATGGTCTAGAAAGCTTGCGTCCTGACGCAGCGTCAGAGTTCGTACTTCAA
TTCCATCTTTGGTTATGATGTTGATCAGCACAGAGTCGCCGGTGTAGATG
TCGCGCTCAGCGGCAGAGATGAAGGTGTCGGAGGCAACGCTCACGGCCCG
CTCCTTGGTTAACTTGATCTTGTCGGCGTCTTCCAAATTCATGTTCTTGT
GACCAATCTGGTTGTCCAGCACCGGTTGCAGCAGGGTGCCGGCAGTGCCG
CCGGCGCGGTATGTAGCCTTCTCGCAGTGACCGATGGGATCGTAGGAGTA
GACGACGCCCTTGCCCTCGTTGTCAATTCCAGCCAGAATGTTCGACACGT
AGTACGGGAAGAAGCGGCGATTGTACATGGCGATGGAGAGCATCTGGGCC
ACGGCCTCAGTGGTCATGGTGCGCAGATGGGTATGCTCGTAGCTCTGCAT
GCGCACCTTAATCGATCCGGTCAACGAGAGCGTGTCCGCCCAGCAGCCTG
CGGAACCCAACACTGTCTGGGGCGAGAGTTTAAAGAGTTTACTCTGCGTT
CGCGAGTGAATGTTGTAGCCGCTGCTCAGGCGGGTGTCCGCTGCAATTAC
GGCAAAGTCATCTCCGGCGATGGCCACAATGGAGCCGCCATTGGACTCGT
AGGGCGAGAAATCAGGATGCTTCATGCCGGGCACCTGGTAGTCCGGGAAT
TGCTCAAAGCCCAATCTGCTCATGTCGACTGATAACT
BO11273.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4097-PA | 708 | Pros26-RA | 1..705 | 723..19 | 3525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta6-RA | 944 | CG4097-RA | 99..805 | 725..19 | 3535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:54:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16609539..16610155 | 19..635 | 3085 | 100 | Plus |
| 3L | 28110227 | 3L | 16610230..16610320 | 635..725 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 16:54:47 has no hits.
BO11273.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:47 Download gff for
BO11273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4097-PA | 1..708 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:11 Download gff for
BO11273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4097-PA | 1..708 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:30:55 Download gff for
BO11273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta6-RA | 93..809 | 13..731 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:58:03 Download gff for
BO11273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta6-RA | 93..809 | 13..731 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:58:03 Download gff for
BO11273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16609535..16610154 | 13..634 | 99 | <- | Plus |
| 3L | 16610230..16610324 | 635..731 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:30:55 Download gff for
BO11273.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16602635..16603254 | 13..634 | 99 | <- | Plus |
| arm_3L | 16603330..16603424 | 635..731 | 95 | | Plus |
BO11273.5prime Sequence
737 bp (736 high quality bases) assembled on 2006-04-19
> BO11273.5prime
GAAGTTATCAGTCGACATGAGCAGATTGGGCTTTGAGCAATTCCCGGACT
ACCAGGTGCCCGGCATGAAGCATCCTGATTTCTCGCCCTACGAGTCCAAT
GGCGGCTCCATTGTGGCCATCGCCGGAGATGACTTTGCCGTAATTGCAGC
GGACACCCGCCTGAGCAGCGGCTACAACATTCACTCGCGAACGCAGAGTA
AACTCTTTAAACTCTCGCCCCAGACAGTGTTGGGTTCCGCAGGCTGCTGG
GCGGACACGCTCTCGTTGACCGGATCGATTAAGGTGCGCATGCAGAGCTA
CGAGCATACCCATCTGCGCACCATGACCACTGAGGCCGTGGCCCAGATGC
TCTCCATCGCCATGTACAATCGCCGCTTCTTCCCGTACTACGTGTCGAAC
ATTCTGGCTGGAATTGACAACGAGGGCAAGGGCGTCGTCTACTCCTACGA
TCCCATCGGTCACTGCGAGAAGGCTACATACCGCGCCGGCGGCACTGCCG
GCACCCTGCTGCAACCGGTGCTGGACAACCAGATTGGTCACAAGAACATG
AATTTGGAAGACGCCGACAAGATCAAGTTAACCAAGGAGCGGGCCGTGAG
CGTTGCCTCCGACACCTTCATCTCTGCCGCTGAGCGCGACATCTACACCG
GCGACTCTGTGCTGATCAACATCATAACCAAAGATGGAATTGAAGTACGA
ACTCTGACGCTGCGTCAGGACGCAAGCTTTCTAGACC
BO11273.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4097-PA | 708 | Pros26-RA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:17:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta6-RA | 944 | CG4097-RA | 99..805 | 15..721 | 3535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16609539..16610155 | 721..105 | 3085 | 100 | Minus |
| 3L | 28110227 | 3L | 16610230..16610320 | 105..15 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:17:50 has no hits.
BO11273.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:48 Download gff for
BO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4097-PA | 1..708 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:12 Download gff for
BO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4097-PA | 1..708 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:08:30 Download gff for
BO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta6-RA | 93..809 | 9..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:28 Download gff for
BO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta6-RA | 93..809 | 9..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:28 Download gff for
BO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16610230..16610324 | 9..105 | 95 | | Minus |
| 3L | 16609535..16610154 | 106..727 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:08:30 Download gff for
BO11273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16602635..16603254 | 106..727 | 99 | <- | Minus |
| arm_3L | 16603330..16603424 | 9..105 | 95 | | Minus |
BO11273.complete Sequence
739 bp assembled on 2006-10-10
GenBank Submission: FJ632052
> BO11273.complete
GAAGTTATCAGTCGACATGAGCAGATTGGGCTTTGAGCAATTCCCGGACT
ACCAGGTGCCCGGCATGAAGCATCCTGATTTCTCGCCCTACGAGTCCAAT
GGCGGCTCCATTGTGGCCATCGCCGGAGATGACTTTGCCGTAATTGCAGC
GGACACCCGCCTGAGCAGCGGCTACAACATTCACTCGCGAACGCAGAGTA
AACTCTTTAAACTCTCGCCCCAGACAGTGTTGGGTTCCGCAGGCTGCTGG
GCGGACACGCTCTCGTTGACCGGATCGATTAAGGTGCGCATGCAGAGCTA
CGAGCATACCCATCTGCGCACCATGACCACTGAGGCCGTGGCCCAGATGC
TCTCCATCGCCATGTACAATCGCCGCTTCTTCCCGTACTACGTGTCGAAC
ATTCTGGCTGGAATTGACAACGAGGGCAAGGGCGTCGTCTACTCCTACGA
TCCCATCGGTCACTGCGAGAAGGCTACATACCGCGCCGGCGGCACTGCCG
GCACCCTGCTGCAACCGGTGCTGGACAACCAGATTGGTCACAAGAACATG
AATTTGGAAGACGCCGACAAGATCAAGTTAACCAAGGAGCGGGCCGTGAG
CGTTGCCTCCGACACCTTCATCTCTGCCGCTGAGCGCGACATCTACACCG
GCGACTCTGTGCTGATCAACATCATAACCAAAGATGGAATTGAAGTACGA
ACTCTGACGCTGCGTCAGGACGCAAGCTTTCTAGACCAT
BO11273.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta6-RA | 708 | CG4097-PA | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta6-RA | 944 | CG4097-RA | 99..805 | 15..721 | 3535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16609539..16610155 | 721..105 | 3085 | 100 | Minus |
| 3L | 28110227 | 3L | 16610230..16610320 | 105..15 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:50:06 has no hits.
BO11273.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:33 Download gff for
BO11273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros26-RA | 1..708 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:44 Download gff for
BO11273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros26-RA | 96..812 | 9..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:03 Download gff for
BO11273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta6-RA | 101..805 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:33 Download gff for
BO11273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros26-RA | 96..812 | 9..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:34 Download gff for
BO11273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta6-RA | 101..805 | 17..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:34 Download gff for
BO11273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16609535..16610154 | 106..723 | 99 | <- | Minus |
| 3L | 16610230..16610318 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:03 Download gff for
BO11273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16602635..16603254 | 106..723 | 99 | <- | Minus |
| arm_3L | 16603330..16603418 | 17..105 | 100 | | Minus |
BO11273.pep Sequence
Translation from 16 to 739
> BO11273.pep
MSRLGFEQFPDYQVPGMKHPDFSPYESNGGSIVAIAGDDFAVIAADTRLS
SGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHL
RTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGKGVVYSYDPIGHC
EKATYRAGGTAGTLLQPVLDNQIGHKNMNLEDADKIKLTKERAVSVASDT
FISAAERDIYTGDSVLINIITKDGIEVRTLTLRQDASFLDH
BO11273.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta6-PA | 235 | CG4097-PA | 1..235 | 1..235 | 1209 | 100 | Plus |
| Prosbeta3-PA | 205 | CG11981-PA | 7..205 | 28..235 | 197 | 28.9 | Plus |
| Prosbeta1-PA | 224 | CG8392-PA | 3..202 | 20..228 | 147 | 28 | Plus |
