Clone Sequence Records
BO11275.3prime Sequence
826 bp (687 high quality bases) assembled on 2006-04-19
> BO11275.3prime
ATGGTCTAGAAAGCTTGCCTGGTAATGGGCGAGTGCCTCCTTGTTAATAA
CGCCCGCATAACTGGTGTACTTCGGCGAGGTTCCATTGAGGGCGATGAAC
TGCTCCGCCACCTCCACGGCAACACGGACCTGCGCCTCCGAAGTGCTCGC
GCCCAGATGCGGCGTGGCCACCACCTTGGGATGACTGATGAGGGCCTTGG
TGACCGCAGACTTTGGCGGCTCCTCGGGATAAACGTCGAAGGCCGCGCCG
GCCACTTTTCCGCTCTCAAGGCCATCGAGCACGGCCTGCTCGTCGATGAT
GCCGCCCCGGGCCACATTCACCACCTTAACGCCCTGTTTGCACTTGGCCA
GTGTCTCCGCCGATATGAGATTTCTGGTGGCTGGGATCAGCGGCGTGTGC
ACGGTTATGTAGTCCGCCAGTGGCCAAATCTCCTCCAGCGTCATCTTCTC
GATGCCCGCCGCCTTGGCCTCAGCCTCCGTGGTGATGGGATCGTAACCAA
TAATCCGCATGCCCCAGGTCTTCATCCGAATGGCGACCTCGCGTCCAATG
CGTCCCAATCCGAGAACGGCCAGGGTTTTTCCATACAGCTCTGTGCCGGC
ATAGAGCTTCCTGTCCCAGCGACCCTCCTTCATGCTCTGACCGGCGGGGA
CGACGGGACGGGCCAGGGAGCCAATTAGGATGCACGTCACCTCACAGGCC
GAAATGGAATTGCCACCCGGAGTGTTCAGGACAACGACATTTTGCGCTGT
GGCTGCGGGAACATCCATGTTGTCAACACCCGCCCCCGCACGGCCAACGA
CCTTCAGGCTGCCGGATCCGGCGGCA
BO11275.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-PA | 999 | CG6287-RA | 190..996 | 825..19 | 3985 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-RA | 1284 | CG6287-RA | 310..1116 | 825..19 | 4005 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11151674..11152026 | 19..371 | 1765 | 100 | Plus |
2L | 23513712 | 2L | 11152335..11152554 | 505..724 | 1085 | 99.5 | Plus |
2L | 23513712 | 2L | 11152139..11152276 | 372..509 | 675 | 99.3 | Plus |
2L | 23513712 | 2L | 11153410..11153510 | 725..825 | 490 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:08:25 has no hits.
BO11275.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:50 Download gff for
BO11275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-PA | 190..999 | 16..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:16 Download gff for
BO11275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-PA | 190..999 | 16..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:22:30 Download gff for
BO11275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 310..1122 | 13..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:54 Download gff for
BO11275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 310..1122 | 13..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:54 Download gff for
BO11275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11151668..11152026 | 13..371 | 99 | <- | Plus |
2L | 11152139..11152271 | 372..504 | 100 | <- | Plus |
2L | 11152335..11152554 | 505..724 | 99 | <- | Plus |
2L | 11153410..11153510 | 725..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:22:30 Download gff for
BO11275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11151668..11152026 | 13..371 | 99 | <- | Plus |
arm_2L | 11152139..11152271 | 372..504 | 100 | <- | Plus |
arm_2L | 11152335..11152554 | 505..724 | 99 | <- | Plus |
arm_2L | 11153410..11153510 | 725..825 | 99 | | Plus |
BO11275.5prime Sequence
830 bp (722 high quality bases) assembled on 2006-04-19
> BO11275.5prime
GAAGTTATCAGTCGACATGCCCCTCAATATAAGAAAAGTGCTGGTCTGCG
ATGCTGTGGACAAATCCTGCGTGGAGCTGCTGGAACAGCATGGGATTAAG
GTTACCTACAAACTAAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
GAATTTCGACGCAGCCATCGTTCGTTCGGATACCAAAATAACCGCGGAAG
TTTTGGCCGCCGGATCCGGCAGCCTGAAGGTCGTTGGCCGTGCGGGGGCG
GGTGTTGACAACATCGATGTTCCCGCAGCCACAGCGCAAAATGTCGTTGT
CCTGAACACTCCGGGTGGCAATTCCATTTCGGCCTGTGAGCTGACGTGCA
TCCTAATTGGCTCCCTGGCCCGTCCCGTCGTCCCCGCCGGTCAGAGCATG
AAGGAGGGTCGCTGGGACAGGAAGCTCTATGCCGGCACAGAGCTGTATGG
AAAAACCCTGGCCGTTCTCGGATTGGGACGCATTGGACGCGAGGTCGCCA
TTCGGATGAAGACCTGGGGCATGCGGATTATTGGTTACGATCCCATCACC
ACGGAGGCTGAGGCCAAGGCGGCGGGCATCGAGAAGATGACGCTGGAGGA
GATTTGGCCACTGGCGGACTACATAACCGTGCACACGCCGCTGATCCCAG
CCACCAGAAATCTCATATCGGCGGAGACACTGGCCAAGTGCAAACAGGGC
GTTAAGGTGGTGAATGTGGCCCGGGGCGGCATCATCGACGAGCAGGCCGT
GCTCGATGGCCTTGAGAGCGGAAAAGTGGCCGGCGCGGCCTTCCACCTTT
ATCCCGAGGAGCCGCCAAAGTCTGCGGTCA
BO11275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-PA | 999 | CG6287-RA | 1..814 | 17..830 | 4020 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-RA | 1284 | CG6287-RA | 121..934 | 17..830 | 4040 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11152335..11152554 | 526..307 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 11151856..11152026 | 830..660 | 825 | 98.8 | Minus |
2L | 23513712 | 2L | 11153410..11153566 | 306..150 | 785 | 100 | Minus |
2L | 23513712 | 2L | 11152139..11152276 | 659..522 | 675 | 99.3 | Minus |
2L | 23513712 | 2L | 11155516..11155601 | 102..17 | 430 | 100 | Minus |
2L | 23513712 | 2L | 11155083..11155136 | 151..98 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:18:12 has no hits.
BO11275.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:51 Download gff for
BO11275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:18 Download gff for
BO11275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:08:34 Download gff for
BO11275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 121..933 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:29 Download gff for
BO11275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 121..933 | 17..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:29 Download gff for
BO11275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11151857..11152026 | 660..829 | 98 | <- | Minus |
2L | 11152139..11152271 | 527..659 | 100 | <- | Minus |
2L | 11152335..11152554 | 307..526 | 100 | <- | Minus |
2L | 11153410..11153564 | 152..306 | 100 | <- | Minus |
2L | 11155083..11155133 | 101..151 | 100 | <- | Minus |
2L | 11155518..11155601 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:08:34 Download gff for
BO11275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11151857..11152026 | 660..829 | 98 | <- | Minus |
arm_2L | 11152139..11152271 | 527..659 | 100 | <- | Minus |
arm_2L | 11152335..11152554 | 307..526 | 100 | <- | Minus |
arm_2L | 11153410..11153564 | 152..306 | 100 | <- | Minus |
arm_2L | 11155083..11155133 | 101..151 | 100 | <- | Minus |
arm_2L | 11155518..11155601 | 17..100 | 100 | | Minus |
BO11275.complete Sequence
1030 bp assembled on 2006-10-10
GenBank Submission: FJ632053
> BO11275.complete
GAAGTTATCAGTCGACATGCCCCTCAATATAAGAAAAGTGCTGGTCTGCG
ATGCTGTGGACAAATCCTGCGTGGAGCTGCTGGAACAGCATGGGATTAAG
GTTACCTACAAACTAAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
GAATTTCGACGCAGCCATCGTTCGTTCGGATACCAAAATAACCGCGGAAG
TTTTGGCCGCCGGATCCGGCAGCCTGAAGGTCGTTGGCCGTGCGGGGGCG
GGTGTTGACAACATCGATGTTCCCGCAGCCACAGCGCAAAATGTCGTTGT
CCTGAACACTCCGGGTGGCAATTCCATTTCGGCCTGTGAGCTGACGTGCA
TCCTAATTGGCTCCCTGGCCCGTCCCGTCGTCCCCGCCGGTCAGAGCATG
AAGGAGGGTCGCTGGGACAGGAAGCTCTATGCCGGCACAGAGCTGTATGG
AAAAACCCTGGCCGTTCTCGGATTGGGACGCATTGGACGCGAGGTCGCCA
TTCGGATGAAGACCTGGGGCATGCGGATTATTGGTTACGATCCCATCACC
ACGGAGGCTGAGGCCAAGGCGGCGGGCATCGAGAAGATGACGCTGGAGGA
GATTTGGCCACTGGCGGACTACATAACCGTGCACACGCCGCTGATCCCAG
CCACCAGAAATCTCATATCGGCGGAGACACTGGCCAAGTGCAAACAGGGC
GTTAAGGTGGTGAATGTGGCCCGGGGCGGCATCATCGACGAGCAGGCCGT
GCTCGATGGCCTTGAGAGCGGAAAAGTGGCCGGCGCGGCCTTCGACGTTT
ATCCCGAGGAGCCGCCAAAGTCTGCGGTCACCAAGGCCCTCATCAGTCAT
CCCAAGGTGGTGGCCACGCCGCATCTGGGCGCGAGCACTTCGGAGGCGCA
GGTCCGTGTTGCCGTGGAGGTGGCGGAGCAGTTCATCGCCCTCAATGGAA
CCTCGCCGAAGTACACCAGTTATGCGGGCGTTATTAACAAGGAGGCACTC
GCCCATTACCAGGCAAGCTTTCTAGACCAT
BO11275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-RA | 999 | CG6287-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-RA | 1284 | CG6287-RA | 121..1116 | 17..1012 | 4980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11151674..11152026 | 1012..660 | 1765 | 100 | Minus |
2L | 23513712 | 2L | 11152335..11152554 | 526..307 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 11153410..11153566 | 306..150 | 785 | 100 | Minus |
2L | 23513712 | 2L | 11152139..11152276 | 659..522 | 675 | 99.3 | Minus |
2L | 23513712 | 2L | 11155516..11155601 | 102..17 | 430 | 100 | Minus |
2L | 23513712 | 2L | 11155083..11155136 | 151..98 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:27:46 has no hits.
BO11275.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:34 Download gff for
BO11275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 1..999 | 17..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:47 Download gff for
BO11275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 116..1117 | 17..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:36 Download gff for
BO11275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 121..1116 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:34 Download gff for
BO11275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 116..1117 | 17..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:22 Download gff for
BO11275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6287-RA | 121..1116 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:22 Download gff for
BO11275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11152335..11152554 | 307..526 | 100 | <- | Minus |
2L | 11153410..11153564 | 152..306 | 100 | <- | Minus |
2L | 11155083..11155133 | 101..151 | 100 | <- | Minus |
2L | 11155518..11155601 | 17..100 | 100 | | Minus |
2L | 11151671..11152026 | 660..1014 | 99 | <- | Minus |
2L | 11152139..11152271 | 527..659 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:36 Download gff for
BO11275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11151671..11152026 | 660..1014 | 99 | <- | Minus |
arm_2L | 11152139..11152271 | 527..659 | 100 | <- | Minus |
arm_2L | 11152335..11152554 | 307..526 | 100 | <- | Minus |
arm_2L | 11153410..11153564 | 152..306 | 100 | <- | Minus |
arm_2L | 11155083..11155133 | 101..151 | 100 | <- | Minus |
arm_2L | 11155518..11155601 | 17..100 | 100 | | Minus |
BO11275.pep Sequence
Translation from 16 to 1030
> BO11275.pep
MPLNIRKVLVCDAVDKSCVELLEQHGIKVTYKLKLPVEELCQEVKNFDAA
IVRSDTKITAEVLAAGSGSLKVVGRAGAGVDNIDVPAATAQNVVVLNTPG
GNSISACELTCILIGSLARPVVPAGQSMKEGRWDRKLYAGTELYGKTLAV
LGLGRIGREVAIRMKTWGMRIIGYDPITTEAEAKAAGIEKMTLEEIWPLA
DYITVHTPLIPATRNLISAETLAKCKQGVKVVNVARGGIIDEQAVLDGLE
SGKVAGAAFDVYPEEPPKSAVTKALISHPKVVATPHLGASTSEAQVRVAV
EVAEQFIALNGTSPKYTSYAGVINKEALAHYQASFLDH
BO11275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6287-PA | 332 | CG6287-PA | 1..332 | 1..332 | 1675 | 100 | Plus |
CtBP-PI | 379 | CG7583-PI | 91..337 | 69..307 | 318 | 31.4 | Plus |
CtBP-PF | 383 | CG7583-PF | 91..337 | 69..307 | 318 | 31.4 | Plus |
CtBP-PG | 473 | CG7583-PG | 91..337 | 69..307 | 318 | 31.4 | Plus |
CtBP-PJ | 476 | CG7583-PJ | 91..337 | 69..307 | 318 | 31.4 | Plus |