Clone BO11275 Report

Search the DGRC for BO11275

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG6287-RA
Protein status:BO11275.pep: validated full length
Sequenced Size:1030

Clone Sequence Records

BO11275.3prime Sequence

826 bp (687 high quality bases) assembled on 2006-04-19

> BO11275.3prime
ATGGTCTAGAAAGCTTGCCTGGTAATGGGCGAGTGCCTCCTTGTTAATAA
CGCCCGCATAACTGGTGTACTTCGGCGAGGTTCCATTGAGGGCGATGAAC
TGCTCCGCCACCTCCACGGCAACACGGACCTGCGCCTCCGAAGTGCTCGC
GCCCAGATGCGGCGTGGCCACCACCTTGGGATGACTGATGAGGGCCTTGG
TGACCGCAGACTTTGGCGGCTCCTCGGGATAAACGTCGAAGGCCGCGCCG
GCCACTTTTCCGCTCTCAAGGCCATCGAGCACGGCCTGCTCGTCGATGAT
GCCGCCCCGGGCCACATTCACCACCTTAACGCCCTGTTTGCACTTGGCCA
GTGTCTCCGCCGATATGAGATTTCTGGTGGCTGGGATCAGCGGCGTGTGC
ACGGTTATGTAGTCCGCCAGTGGCCAAATCTCCTCCAGCGTCATCTTCTC
GATGCCCGCCGCCTTGGCCTCAGCCTCCGTGGTGATGGGATCGTAACCAA
TAATCCGCATGCCCCAGGTCTTCATCCGAATGGCGACCTCGCGTCCAATG
CGTCCCAATCCGAGAACGGCCAGGGTTTTTCCATACAGCTCTGTGCCGGC
ATAGAGCTTCCTGTCCCAGCGACCCTCCTTCATGCTCTGACCGGCGGGGA
CGACGGGACGGGCCAGGGAGCCAATTAGGATGCACGTCACCTCACAGGCC
GAAATGGAATTGCCACCCGGAGTGTTCAGGACAACGACATTTTGCGCTGT
GGCTGCGGGAACATCCATGTTGTCAACACCCGCCCCCGCACGGCCAACGA
CCTTCAGGCTGCCGGATCCGGCGGCA

BO11275.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6287-PA 999 CG6287-RA 190..996 825..19 3985 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG6287-RA 1284 CG6287-RA 310..1116 825..19 4005 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11151674..11152026 19..371 1765 100 Plus
2L 23513712 2L 11152335..11152554 505..724 1085 99.5 Plus
2L 23513712 2L 11152139..11152276 372..509 675 99.3 Plus
2L 23513712 2L 11153410..11153510 725..825 490 99 Plus
Blast to na_te.dros performed on 2015-02-12 04:08:25 has no hits.

BO11275.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:50 Download gff for BO11275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6287-PA 190..999 16..825 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:16 Download gff for BO11275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6287-PA 190..999 16..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:22:30 Download gff for BO11275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 310..1122 13..825 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:54 Download gff for BO11275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 310..1122 13..825 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:54 Download gff for BO11275.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11151668..11152026 13..371 99 <- Plus
2L 11152139..11152271 372..504 100 <- Plus
2L 11152335..11152554 505..724 99 <- Plus
2L 11153410..11153510 725..825 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:22:30 Download gff for BO11275.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11151668..11152026 13..371 99 <- Plus
arm_2L 11152139..11152271 372..504 100 <- Plus
arm_2L 11152335..11152554 505..724 99 <- Plus
arm_2L 11153410..11153510 725..825 99   Plus

BO11275.5prime Sequence

830 bp (722 high quality bases) assembled on 2006-04-19

> BO11275.5prime
GAAGTTATCAGTCGACATGCCCCTCAATATAAGAAAAGTGCTGGTCTGCG
ATGCTGTGGACAAATCCTGCGTGGAGCTGCTGGAACAGCATGGGATTAAG
GTTACCTACAAACTAAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
GAATTTCGACGCAGCCATCGTTCGTTCGGATACCAAAATAACCGCGGAAG
TTTTGGCCGCCGGATCCGGCAGCCTGAAGGTCGTTGGCCGTGCGGGGGCG
GGTGTTGACAACATCGATGTTCCCGCAGCCACAGCGCAAAATGTCGTTGT
CCTGAACACTCCGGGTGGCAATTCCATTTCGGCCTGTGAGCTGACGTGCA
TCCTAATTGGCTCCCTGGCCCGTCCCGTCGTCCCCGCCGGTCAGAGCATG
AAGGAGGGTCGCTGGGACAGGAAGCTCTATGCCGGCACAGAGCTGTATGG
AAAAACCCTGGCCGTTCTCGGATTGGGACGCATTGGACGCGAGGTCGCCA
TTCGGATGAAGACCTGGGGCATGCGGATTATTGGTTACGATCCCATCACC
ACGGAGGCTGAGGCCAAGGCGGCGGGCATCGAGAAGATGACGCTGGAGGA
GATTTGGCCACTGGCGGACTACATAACCGTGCACACGCCGCTGATCCCAG
CCACCAGAAATCTCATATCGGCGGAGACACTGGCCAAGTGCAAACAGGGC
GTTAAGGTGGTGAATGTGGCCCGGGGCGGCATCATCGACGAGCAGGCCGT
GCTCGATGGCCTTGAGAGCGGAAAAGTGGCCGGCGCGGCCTTCCACCTTT
ATCCCGAGGAGCCGCCAAAGTCTGCGGTCA

BO11275.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6287-PA 999 CG6287-RA 1..814 17..830 4020 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6287-RA 1284 CG6287-RA 121..934 17..830 4040 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11152335..11152554 526..307 1100 100 Minus
2L 23513712 2L 11151856..11152026 830..660 825 98.8 Minus
2L 23513712 2L 11153410..11153566 306..150 785 100 Minus
2L 23513712 2L 11152139..11152276 659..522 675 99.3 Minus
2L 23513712 2L 11155516..11155601 102..17 430 100 Minus
2L 23513712 2L 11155083..11155136 151..98 270 100 Minus
Blast to na_te.dros performed on 2015-02-02 13:18:12 has no hits.

BO11275.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:51 Download gff for BO11275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6287-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:18 Download gff for BO11275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6287-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:08:34 Download gff for BO11275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 121..933 17..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:29 Download gff for BO11275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 121..933 17..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:29 Download gff for BO11275.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11151857..11152026 660..829 98 <- Minus
2L 11152139..11152271 527..659 100 <- Minus
2L 11152335..11152554 307..526 100 <- Minus
2L 11153410..11153564 152..306 100 <- Minus
2L 11155083..11155133 101..151 100 <- Minus
2L 11155518..11155601 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:08:34 Download gff for BO11275.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11151857..11152026 660..829 98 <- Minus
arm_2L 11152139..11152271 527..659 100 <- Minus
arm_2L 11152335..11152554 307..526 100 <- Minus
arm_2L 11153410..11153564 152..306 100 <- Minus
arm_2L 11155083..11155133 101..151 100 <- Minus
arm_2L 11155518..11155601 17..100 100   Minus

BO11275.complete Sequence

1030 bp assembled on 2006-10-10

GenBank Submission: FJ632053

> BO11275.complete
GAAGTTATCAGTCGACATGCCCCTCAATATAAGAAAAGTGCTGGTCTGCG
ATGCTGTGGACAAATCCTGCGTGGAGCTGCTGGAACAGCATGGGATTAAG
GTTACCTACAAACTAAAGCTCCCCGTGGAGGAACTGTGTCAGGAAGTTAA
GAATTTCGACGCAGCCATCGTTCGTTCGGATACCAAAATAACCGCGGAAG
TTTTGGCCGCCGGATCCGGCAGCCTGAAGGTCGTTGGCCGTGCGGGGGCG
GGTGTTGACAACATCGATGTTCCCGCAGCCACAGCGCAAAATGTCGTTGT
CCTGAACACTCCGGGTGGCAATTCCATTTCGGCCTGTGAGCTGACGTGCA
TCCTAATTGGCTCCCTGGCCCGTCCCGTCGTCCCCGCCGGTCAGAGCATG
AAGGAGGGTCGCTGGGACAGGAAGCTCTATGCCGGCACAGAGCTGTATGG
AAAAACCCTGGCCGTTCTCGGATTGGGACGCATTGGACGCGAGGTCGCCA
TTCGGATGAAGACCTGGGGCATGCGGATTATTGGTTACGATCCCATCACC
ACGGAGGCTGAGGCCAAGGCGGCGGGCATCGAGAAGATGACGCTGGAGGA
GATTTGGCCACTGGCGGACTACATAACCGTGCACACGCCGCTGATCCCAG
CCACCAGAAATCTCATATCGGCGGAGACACTGGCCAAGTGCAAACAGGGC
GTTAAGGTGGTGAATGTGGCCCGGGGCGGCATCATCGACGAGCAGGCCGT
GCTCGATGGCCTTGAGAGCGGAAAAGTGGCCGGCGCGGCCTTCGACGTTT
ATCCCGAGGAGCCGCCAAAGTCTGCGGTCACCAAGGCCCTCATCAGTCAT
CCCAAGGTGGTGGCCACGCCGCATCTGGGCGCGAGCACTTCGGAGGCGCA
GGTCCGTGTTGCCGTGGAGGTGGCGGAGCAGTTCATCGCCCTCAATGGAA
CCTCGCCGAAGTACACCAGTTATGCGGGCGTTATTAACAAGGAGGCACTC
GCCCATTACCAGGCAAGCTTTCTAGACCAT

BO11275.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6287-RA 999 CG6287-PA 1..996 17..1012 4980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6287-RA 1284 CG6287-RA 121..1116 17..1012 4980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11151674..11152026 1012..660 1765 100 Minus
2L 23513712 2L 11152335..11152554 526..307 1100 100 Minus
2L 23513712 2L 11153410..11153566 306..150 785 100 Minus
2L 23513712 2L 11152139..11152276 659..522 675 99.3 Minus
2L 23513712 2L 11155516..11155601 102..17 430 100 Minus
2L 23513712 2L 11155083..11155136 151..98 270 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:27:46 has no hits.

BO11275.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:34 Download gff for BO11275.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 1..999 17..1015 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:47 Download gff for BO11275.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 116..1117 17..1018 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:36 Download gff for BO11275.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 121..1116 17..1014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:34 Download gff for BO11275.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 116..1117 17..1018 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:22 Download gff for BO11275.complete
Subject Subject Range Query Range Percent Splice Strand
CG6287-RA 121..1116 17..1014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:22 Download gff for BO11275.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11152335..11152554 307..526 100 <- Minus
2L 11153410..11153564 152..306 100 <- Minus
2L 11155083..11155133 101..151 100 <- Minus
2L 11155518..11155601 17..100 100   Minus
2L 11151671..11152026 660..1014 99 <- Minus
2L 11152139..11152271 527..659 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:36 Download gff for BO11275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11151671..11152026 660..1014 99 <- Minus
arm_2L 11152139..11152271 527..659 100 <- Minus
arm_2L 11152335..11152554 307..526 100 <- Minus
arm_2L 11153410..11153564 152..306 100 <- Minus
arm_2L 11155083..11155133 101..151 100 <- Minus
arm_2L 11155518..11155601 17..100 100   Minus

BO11275.pep Sequence

Translation from 16 to 1030

> BO11275.pep
MPLNIRKVLVCDAVDKSCVELLEQHGIKVTYKLKLPVEELCQEVKNFDAA
IVRSDTKITAEVLAAGSGSLKVVGRAGAGVDNIDVPAATAQNVVVLNTPG
GNSISACELTCILIGSLARPVVPAGQSMKEGRWDRKLYAGTELYGKTLAV
LGLGRIGREVAIRMKTWGMRIIGYDPITTEAEAKAAGIEKMTLEEIWPLA
DYITVHTPLIPATRNLISAETLAKCKQGVKVVNVARGGIIDEQAVLDGLE
SGKVAGAAFDVYPEEPPKSAVTKALISHPKVVATPHLGASTSEAQVRVAV
EVAEQFIALNGTSPKYTSYAGVINKEALAHYQASFLDH

BO11275.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6287-PA 332 CG6287-PA 1..332 1..332 1675 100 Plus
CtBP-PI 379 CG7583-PI 91..337 69..307 318 31.4 Plus
CtBP-PF 383 CG7583-PF 91..337 69..307 318 31.4 Plus
CtBP-PG 473 CG7583-PG 91..337 69..307 318 31.4 Plus
CtBP-PJ 476 CG7583-PJ 91..337 69..307 318 31.4 Plus