Clone Sequence Records
BO11277.3prime Sequence
736 bp (666 high quality bases) assembled on 2006-04-19
> BO11277.3prime
ATGGTCTAGAAAGCTTGCCTTTTTGCGTCCACCACGCTCCTTGACCTGTA
AATGCACCGTGGTTCCGTTTACCAGATTGTAAAAAGCCATGGTATTGCTG
TCTTTGAAGAACATTCCCTCATAAAATATCTTCTGCTTGGCCGGTGGCAT
GCCAGTTTCGTCCTGCAGCTTCGTCTTCAGATTGGCAATGGGTTCAGAAA
GTGCCATGGTCACGGCTATCATCTGTCCATTAAGCTTCCACTCTGATTTG
TCGGAATTGGGTACCAAAACCTGAATGGTCACAGGGCTCTTGTGGGTGGC
AATAAAGTCTGCTTCTGGAATCAGGTTGTCCTCGCTTCGAATCTTTTTAG
AAGGCGGCTCCTCCTCCATTATATCAACAGGTGGAGCAGGTGCAATTTGC
TGAGGGATTCCACCAGGCTGCATGTTCATGTAGCCTCCACCACCAGCTCC
AAAAGGCGGCTGCATCATGGTTGGACGCAGTTGCATCAGCTGCATCACCG
GTTGAGGCTGCTGCGGCGGGTGATGGTGGTGCGACTGGTGAGGTGGCGCC
TGCTGATGCGGTGGATGGTGATGATGAGGATTATGATGCCCGTGGTGACC
ACCTCCGCCACCTTGGTGGTGTTGACTCTGGCTGGAGTGACTGTGCTGCG
ACTTGGTTGACGGCTGCGGGGGAGCTGAAAGCGTCGCCTTGTTGCCCACC
GGTTTGGGGCCGATTTTCTCCTTCTCCTCGTCGGGC
BO11277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-PA | 2355 | CG16941-RA | 1635..2352 | 736..19 | 3565 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-RA | 2558 | CG16941-RA | 1731..2448 | 736..19 | 3575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17000111..17000385 | 462..736 | 1360 | 99.6 | Plus |
| 3R | 32079331 | 3R | 16999649..16999822 | 117..290 | 870 | 100 | Plus |
| 3R | 32079331 | 3R | 16999882..17000054 | 289..461 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 16999494..16999594 | 19..119 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:21:10 has no hits.
BO11277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:54 Download gff for
BO11277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-PA | 1635..2355 | 18..736 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:22 Download gff for
BO11277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-PA | 1635..2355 | 18..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:54:50 Download gff for
BO11277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 1731..2453 | 13..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:26:36 Download gff for
BO11277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 1731..2453 | 13..736 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:26:36 Download gff for
BO11277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16999489..16999592 | 13..117 | 97 | <- | Plus |
| 3R | 16999650..16999820 | 118..288 | 100 | <- | Plus |
| 3R | 16999882..17000054 | 289..461 | 100 | <- | Plus |
| 3R | 17000111..17000385 | 462..736 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:54:50 Download gff for
BO11277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12825211..12825314 | 13..117 | 97 | <- | Plus |
| arm_3R | 12825372..12825542 | 118..288 | 100 | <- | Plus |
| arm_3R | 12825604..12825776 | 289..461 | 100 | <- | Plus |
| arm_3R | 12825833..12826107 | 462..736 | 99 | | Plus |
BO11277.5prime Sequence
820 bp (692 high quality bases) assembled on 2006-04-19
> BO11277.5prime
GAAGTTATCAGTCGACATGGCAACTTTAGACGCGGAAGCCAACGAGGAGC
AGTTCGGCAATGATCAGCCCAAGTCGATGTCGGGTCCAATCATTGGGATT
ATCTATCCGCCGCCGGAAGTTAGAAATATCGTTGACAAGACCGCCAGTTT
TGTGGCTCGCAATGGACCGGAATTCGAGGCGCGCATCCGCCAAAATGAGC
TGGGCAATCCAAAGTTTAACTTCTTAAATGGCGGAGATCCCTACCACGCA
TACTACAGACACAAGGTCAACGAGTTCCGCGAGGGCAATGATGCCGGTAT
CACTGCCCTTGCCAGCATGAAGCAGCTGGCGGTGACCAGTGCCGCCCAAC
AGCGCCAGCAAGAGCTTCTCAAGCAAGTGGTGGAGCAGCAGTTCGTACCA
AAGGAACCTCCACCTGAATTCGAGTTCATAGCCGATCCGCCCTCCATTTC
GGCGCTGGATTTGGACATTGTGAAGCTAACTGCTCAATTTGTGGCCCGTA
ACGGCCGACAGTTTCTGACCAATCTTATGAGCCGGGAGCAGCGTAACTTT
CAGTTTGACTTCCTGCGACCCCAGCACTCGCTCTTCCAGTACTTTACCAA
GTTGCTGGAGCAGTATACCAAGGTCTTGATACCTCCAAAGGATTTGCTGG
GCAAACTGCGTTCCGAGAGCGCACCGGGCAGGAGCAGCATGAACCAGGTG
CTGGAGCAGGTTAAATATCGGGCCAACTGGCAGCGTCACCAAGAAACACA
ACGCCGCCGTGAGGAGGAGAAGATCGAAAGGGAGCGCGTGGCCTATGCCC
AATTCGATTGGCATGACTTT
BO11277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-PA | 2355 | CG16941-RA | 1..804 | 17..820 | 3970 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-RA | 2558 | CG16941-RA | 96..900 | 16..820 | 3995 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:39:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17001216..17001573 | 820..463 | 1760 | 99.4 | Minus |
| 3R | 32079331 | 3R | 17001634..17001807 | 463..290 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 17001864..17002028 | 290..126 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 17002151..17002260 | 125..16 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 05:39:30 has no hits.
BO11277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:55 Download gff for
BO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:24 Download gff for
BO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:14 Download gff for
BO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..900 | 9..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:30:27 Download gff for
BO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..900 | 9..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:30:27 Download gff for
BO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17001216..17001573 | 463..820 | 99 | <- | Minus |
| 3R | 17001635..17001806 | 291..462 | 100 | <- | Minus |
| 3R | 17001864..17002028 | 126..290 | 100 | <- | Minus |
| 3R | 17002151..17002264 | 9..125 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:14 Download gff for
BO11277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12826938..12827295 | 463..820 | 99 | <- | Minus |
| arm_3R | 12827357..12827528 | 291..462 | 100 | <- | Minus |
| arm_3R | 12827586..12827750 | 126..290 | 100 | <- | Minus |
| arm_3R | 12827873..12827986 | 9..125 | 97 | | Minus |
BO11277.complete Sequence
2386 bp assembled on 2008-01-16
GenBank Submission: FJ632054
> BO11277.complete
GAAGTTATCAGTCGACATGGCAACTTTAGACGCGGAAGCCAACGAGGAGC
AGTTCGGCAATGATCAGCCCAAGTCGATGTCGGGTCCAATCATTGGGATT
ATCTATCCGCCGCCGGAAGTTAGAAATATCGTTGACAAGACCGCCAGTTT
TGTGGCTCGCAATGGACCGGAATTCGAGGCGCGCATCCGCCAAAATGAGC
TGGGCAATCCAAAGTTTAACTTCTTAAATGGCGGAGATCCCTACCACGCA
TACTACAGACACAAGGTCAACGAGTTCCGCGAGGGCAATGATGCCGGTAT
CACTGCCCTTGCCAGCATGAAGCAGCTGGCGGTGACCAGTGCCGCCCAAC
AGCGCCAGCAAGAGCTTCTCAAGCAAGTGGTGGAGCAGCAGTTCGTACCA
AAGGAACCTCCACCTGAATTCGAGTTCATAGCCGATCCGCCCTCCATTTC
GGCGCTGGATTTGGACATTGTGAAGCTAACTGCTCAATTTGTGGCCCGTA
ACGGCCGACAGTTTCTGACCAATCTTATGAGCCGGGAGCAGCGTAACTTT
CAGTTTGACTTCCTGCGACCCCAGCACTCGCTCTTCCAGTACTTTACCAA
GTTGCTGGAGCAGTATACCAAGGTCTTGATACCTCCAAAGGATTTGCTGG
GCAAACTGCGTTCCGAGAGCGCACCGGGCAGGAGCAGCATGAACCAGGTG
CTGGAGCAGGTTAAATATCGGGCCAACTGGCAGCGTCACCAAGAAGCACA
ACGCCGCCGTGAGGAGGAGAAGATCGAAAGGGAGCGCGTGGCCTATGCCC
AAATCGATTGGCATGACTTTGTGGTGGTGGAGACGGTGGACTATCAGCCA
TTCGAATCGGGCAACTTCCCGCCACCCACGAATCCCGACGAGGTAGGAGC
CCGTGTGCTAATGGAAGAGCGTCTAATGGACGAAGAGGGCGATACAGAAA
TGCAGATCGAGTCGGACGACGAGGGCGACTCCCAGGCTAACAACCTATTG
GACAGCGGTCTGAAACTCTCGCAAATGGAGAACCGTGTGGGTATACAAAT
GAAGAACGTATCGTCGTATGGCCAGCCGACTGGCCCCAAGAGAGACAACA
CCCAGGTGCAAGACATGGACGAAGCCTCTAGTGATGAGGACACTCCAACC
ACTAAGTTGCAGCCATCTGTTGCGCCAATGCTGCCGCCCACCCACGACAA
AGTGGTGGTCAAGAAATACGATCCTAAGGCAACGCAACCGAAGCAGGCGC
CAATGCCTACGGATGAGTATCTCATCTCGCCGATTACAGGAGAGAAAATA
CCGGCTTCCAAGGTCTCGGAGCACATGCGCATCGGTCTATTGGATCCACG
CTGGGTGGAACAGCGAGACAAGCATACTGTGGAGAAAATCAATCAAGACA
ATGTGTTCGCCGCGGGCACTGCCATCGAGGCGAGTCTCAAGCAACTGGCT
GAGCGTCGTACGGATATCTTTGGTGTGGGCGACGAGGAGACCGTCATTGG
TAAGAAGCTCGGCGAAGAGGAGACGAAGAAGGACGATCGCGTCACCTGGG
ACGGACACACGTCCAGCGTGGAGGCGGCCACGAGAGCAGCACGTGCAAAT
ATCACTCTGGAGGAACAAATTCATCAAATCCACAAGGTTAAGGGACTGCT
GCCCGACGAGGAGAAGGAGAAAATCGGCCCCAAACCGGTGGGCAACAAGG
CGACGCTTTCAGCTCCGCCGCAGCCGTCAACCAAGTCGCAGCACAGTCAC
TCCAGCCAGAGTCAACACCACCAAGGTGGCGGAGGTGGTCACCACGGGCA
TCATAATCCTCATCATCACCATCCACCGCATCAGCAGGCGCCACCTCACC
AGTCGCACCACCATCACCCGCCGCAGCAGCCTCAACCGGTGATGCAGCTG
ATGCAACTGCGTCCAACCATGATGCAGCCGCCTTTTGGAGCTGGTGGTGG
AGGCTACATGAACATGCAGCCTGGTGGAATCCCTCAGCAAATTGCACCTG
CTCCACCTGTTGATATAATGGAGGAGGAGCCGCCTTCTAAAAAGATTCGA
AGCGAGGACAACCTGATTCCAGAAGCAGACTTTATTGCCACCCACAAGAG
CCCTGTGACCATTCAGGTTTTGGTACCCAATTCCGACAAATCAGAGTGGA
AGCTTAATGGACAGATGATAGCCGTGACCATGGCACTTTCTGAACCCATT
GCCAATCTGAAGACGAAGCTGCAGGACGAAACTGGCATGCCACCGGCCAA
GCAGAAGATATTTTATGAGGGAATGTTCTTCAAAGACAGCAATACCATGG
CTTTTTACAATCTGGTAAACGGAACCACGGTGCATTTACAGGTCAAGGAG
CGTGGTGGACGCAAAAAGGCAAGCTTTCTAGACCAT
BO11277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-RA | 2355 | CG16941-PA | 1..2352 | 17..2368 | 11760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-RA | 2558 | CG16941-RA | 96..2448 | 16..2368 | 11765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17000111..17001573 | 1925..463 | 7315 | 100 | Minus |
| 3R | 32079331 | 3R | 16999649..16999822 | 2270..2097 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 17001634..17001807 | 463..290 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 16999882..17000054 | 2098..1926 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 17001864..17002028 | 290..126 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 17002151..17002260 | 125..16 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 16999494..16999594 | 2368..2268 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:17:07 has no hits.
BO11277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:07 Download gff for
BO11277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 1..2355 | 17..2369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:59 Download gff for
BO11277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 97..2448 | 17..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:19:47 Download gff for
BO11277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 97..2448 | 17..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:07 Download gff for
BO11277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 92..2453 | 9..2374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:51 Download gff for
BO11277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16941-RA | 97..2448 | 17..2370 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:51 Download gff for
BO11277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16999492..16999592 | 2270..2370 | 98 | <- | Minus |
| 3R | 16999650..16999820 | 2099..2269 | 100 | <- | Minus |
| 3R | 16999882..17000054 | 1926..2098 | 100 | <- | Minus |
| 3R | 17000111..17001573 | 463..1925 | 100 | <- | Minus |
| 3R | 17001635..17001806 | 291..462 | 100 | <- | Minus |
| 3R | 17001864..17002028 | 126..290 | 100 | <- | Minus |
| 3R | 17002151..17002259 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:19:47 Download gff for
BO11277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12825214..12825314 | 2270..2370 | 98 | <- | Minus |
| arm_3R | 12825372..12825542 | 2099..2269 | 100 | <- | Minus |
| arm_3R | 12825604..12825776 | 1926..2098 | 100 | <- | Minus |
| arm_3R | 12825833..12827295 | 463..1925 | 100 | <- | Minus |
| arm_3R | 12827357..12827528 | 291..462 | 100 | <- | Minus |
| arm_3R | 12827586..12827750 | 126..290 | 100 | <- | Minus |
| arm_3R | 12827873..12827981 | 17..125 | 100 | | Minus |
BO11277.pep Sequence
Translation from 16 to 2386
> BO11277.pep
MATLDAEANEEQFGNDQPKSMSGPIIGIIYPPPEVRNIVDKTASFVARNG
PEFEARIRQNELGNPKFNFLNGGDPYHAYYRHKVNEFREGNDAGITALAS
MKQLAVTSAAQQRQQELLKQVVEQQFVPKEPPPEFEFIADPPSISALDLD
IVKLTAQFVARNGRQFLTNLMSREQRNFQFDFLRPQHSLFQYFTKLLEQY
TKVLIPPKDLLGKLRSESAPGRSSMNQVLEQVKYRANWQRHQEAQRRREE
EKIERERVAYAQIDWHDFVVVETVDYQPFESGNFPPPTNPDEVGARVLME
ERLMDEEGDTEMQIESDDEGDSQANNLLDSGLKLSQMENRVGIQMKNVSS
YGQPTGPKRDNTQVQDMDEASSDEDTPTTKLQPSVAPMLPPTHDKVVVKK
YDPKATQPKQAPMPTDEYLISPITGEKIPASKVSEHMRIGLLDPRWVEQR
DKHTVEKINQDNVFAAGTAIEASLKQLAERRTDIFGVGDEETVIGKKLGE
EETKKDDRVTWDGHTSSVEAATRAARANITLEEQIHQIHKVKGLLPDEEK
EKIGPKPVGNKATLSAPPQPSTKSQHSHSSQSQHHQGGGGGHHGHHNPHH
HHPPHQQAPPHQSHHHHPPQQPQPVMQLMQLRPTMMQPPFGAGGGGYMNM
QPGGIPQQIAPAPPVDIMEEEPPSKKIRSEDNLIPEADFIATHKSPVTIQ
VLVPNSDKSEWKLNGQMIAVTMALSEPIANLKTKLQDETGMPPAKQKIFY
EGMFFKDSNTMAFYNLVNGTTVHLQVKERGGRKKASFLDH
BO11277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16941-PA | 784 | CG16941-PA | 1..784 | 1..784 | 4136 | 100 | Plus |
