Clone BO11278 Report

Search the DGRC for BO11278

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:112
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG6136-RB
Protein status:BO11278.pep: validated full length
Sequenced Size:823

Clone Sequence Records

BO11278.3prime Sequence

755 bp (644 high quality bases) assembled on 2006-04-19

> BO11278.3prime
ATGGTCTAGAAAGCTTGCGCGGGAGCTCATCGCTTTCGCAATGGTAACCA
TCTTTCGCACCACGATGGAGTTGGTTCCGTAGTAGGGGTCCACGTCCTGT
TTGCCCATGGTCACGTCACACTCCATTCGCGTGGTGGTGGGCGCCACGTA
GTCCTCGCCAGCCGTGTCCAGGGCGGAAGCGTGAAACTCTAGGCAGCGAC
TGACCGTGAGGATCTCCTCCAGGTTGGACACCTTTATGCCGGCGCCGGGC
ATAACTATAAAGTCTCTTTGATGTTTGGCTATCAGCTGTGCCAGGCAATC
TACGCCATCGGCAGCCGTGGGTCGGAATCCGCTGCTCAGCAGACGTCGGA
AACCTAGTTCCCGCAACATGTCGACATTCTCGTCCATGGACTTCTGGTCG
GTGAGGTCGAAGGCGCGGTGAAAGGTCACTGGCAGACCACCGGACGCCAG
CAAAACGTGCCGACACTGATCCACGTTGATGCTGCGATCCGGATTCAGGG
ATCCGAAAACGAAGCCATCGGCACCGTTTTCCCGCAGCAAGTCCATGTCC
GTGAGCAGGGCGCACATCTCCTCGTCGCTGTAGACAAAGTCGGTGCCCCG
CCGTGGCCTCAGCATGCAGTAAATGGGCATTGTGAGCGTTTCCTTAATAG
TTTTTAGGGTACCGATGCTGGGTGTCAAGCCACCTTCGCCCAATGCCGAA
CACAGTTCAATGCGTGAAGCTCCGCCTTCCTCGGCGGCAAAACCCGATCG
TATGG

BO11278.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-PA 792 CG6136-RA 53..789 755..19 3660 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-RD 2071 CG6136-RD 452..1188 755..19 3670 99.9 Minus
CG6136-RC 2177 CG6136-RC 452..1188 755..19 3670 99.9 Minus
CG6136-RB 1398 CG6136-RB 452..1188 755..19 3670 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15371025..15371761 19..755 3670 99.9 Plus
Blast to na_te.dros performed on 2015-02-09 03:21:25 has no hits.

BO11278.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:56 Download gff for BO11278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-PA 53..792 16..755 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:25 Download gff for BO11278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-PA 53..792 16..755 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:54:53 Download gff for BO11278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 452..1192 15..755 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:26:38 Download gff for BO11278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 452..1192 15..755 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:26:38 Download gff for BO11278.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15371020..15371761 15..755 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:54:53 Download gff for BO11278.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11196742..11197483 15..755 99   Plus

BO11278.5prime Sequence

821 bp (686 high quality bases) assembled on 2006-04-19

> BO11278.5prime
GAAGTTATCAGTCGACATGATAAGAGAAATGTCCAACCACGATATCAAGC
TGGAGGTCTGCGTGGACTCCATACGATCGGCTTTTGCCGCCGAGGAAGGC
GGAGCTTCACGCATTGAACTGTGTTCGGCATTGGGCGAAGGTGGCTTGAC
ACCCAGCATCGGTACCCTAAAAACTATTAAGGAAACGCTCACAATGCCCA
TTTACTGCATGCTGAGGCCACGGCGGGGCACCGACTTTGTCTACAGCGAC
GAGGAGATGTGCGCCCTGCTCACGGACATGGACTTGCTGCGGGAAAACGG
TGCCGATGGCTTCGTTTTCGGATCCCTGAATCCGGATCGCAGCATCAACG
TGGATCAGTGTCGGCACGTTTTGCTGGCGTCCGGTGGTCTGCCAGTGACC
TTTCACCGCGCCTTCGACCTCACCGACCAGAAGTCCATGGACGAGAATGT
CGACATGTTGCGGGAACTAGGTTTCCGACGTCTGCTGAGCAGCGGATTCC
GACCCACGGCTGCCGATGGCGTAGATTGCCTGGCACAGCTGATAGCCAAA
CATCAAAGAGACTTTATAGTTATGCCCGGCGCCGGCATAAAGGTGTCCAA
CCTGGAGGAGATCCTCACGGTCAGTCGCTGCCTAGAGTTTCACGCTTCCG
CCCTGGACACGGCTGGCGAGGACTACGTGGCGCCCACCACCACGCGAATG
GAGTGTGACGTGACCATGGGCAAACAGGACGTGGACCCCTACTACGGAAC
CAACTCCATCGTGGTGCGAAAGATGGTTACCATTGCGAAAGCGATGAGCT
CCCGCGCAAGCTTTCTAGAAC

BO11278.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-PA 792 CG6136-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-RD 2071 CG6136-RD 400..1188 17..805 3945 100 Plus
CG6136-RC 2177 CG6136-RC 400..1188 17..805 3945 100 Plus
CG6136-RB 1398 CG6136-RB 400..1188 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15371025..15371813 805..17 3945 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:07:07 has no hits.

BO11278.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:58 Download gff for BO11278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:26 Download gff for BO11278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-PA 1..792 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:06:14 Download gff for BO11278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 392..1192 5..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:50 Download gff for BO11278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 392..1192 5..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:50 Download gff for BO11278.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15371020..15371820 5..809 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:06:14 Download gff for BO11278.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11196742..11197542 5..809 99   Minus

BO11278.complete Sequence

823 bp assembled on 2006-10-10

GenBank Submission: FJ632055

> BO11278.complete
GAAGTTATCAGTCGACATGATAAGAGAAATGTCCAACCACGATATCAAGC
TGGAGGTCTGCGTGGACTCCATACGATCGGCTTTTGCCGCCGAGGAAGGC
GGAGCTTCACGCATTGAACTGTGTTCGGCATTGGGCGAAGGTGGCTTGAC
ACCCAGCATCGGTACCCTAAAAACTATTAAGGAAACGCTCACAATGCCCA
TTTACTGCATGCTGAGGCCACGGCGGGGCACCGACTTTGTCTACAGCGAC
GAGGAGATGTGCGCCCTGCTCACGGACATGGACTTGCTGCGGGAAAACGG
TGCCGATGGCTTCGTTTTCGGATCCCTGAATCCGGATCGCAGCATCAACG
TGGATCAGTGTCGGCACGTTTTGCTGGCGTCCGGTGGTCTGCCAGTGACC
TTTCACCGCGCCTTCGACCTCACCGACCAGAAGTCCATGGACGAGAATGT
CGACATGTTGCGGGAACTAGGTTTCCGACGTCTGCTGAGCAGCGGATTCC
GACCCACGGCTGCCGATGGCGTAGATTGCCTGGCACAGCTGATAGCCAAA
CATCAAAGAGACTTTATAGTTATGCCCGGCGCCGGCATAAAGGTGTCCAA
CCTGGAGGAGATCCTCACGGTCAGTCGCTGCCTAGAGTTTCACGCTTCCG
CCCTGGACACGGCTGGCGAGGACTACGTGGCGCCCACCACCACGCGAATG
GAGTGTGACGTGACCATGGGCAAACAGGACGTGGACCCCTACTACGGAAC
CAACTCCATCGTGGTGCGAAAGATGGTTACCATTGCGAAAGCGATGAGCT
CCCGCGCAAGCTTTCTAGACCAT

BO11278.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-RD 792 CG6136-PD 1..789 17..805 3945 100 Plus
CG6136-RC 792 CG6136-PC 1..789 17..805 3945 100 Plus
CG6136-RB 792 CG6136-PB 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-RD 2071 CG6136-RD 400..1188 17..805 3945 100 Plus
CG6136-RC 2177 CG6136-RC 400..1188 17..805 3945 100 Plus
CG6136-RB 1398 CG6136-RB 400..1188 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15371025..15371813 805..17 3945 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:46:19 has no hits.

BO11278.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:35 Download gff for BO11278.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RA 1..792 17..808 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:48 Download gff for BO11278.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RA 356..1156 5..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:24 Download gff for BO11278.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 400..1188 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:35 Download gff for BO11278.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RA 356..1156 5..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:19 Download gff for BO11278.complete
Subject Subject Range Query Range Percent Splice Strand
CG6136-RB 400..1188 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:19 Download gff for BO11278.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15371022..15371813 17..807 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:24 Download gff for BO11278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11196744..11197535 17..807 99   Minus

BO11278.pep Sequence

Translation from 16 to 823

> BO11278.pep
MIREMSNHDIKLEVCVDSIRSAFAAEEGGASRIELCSALGEGGLTPSIGT
LKTIKETLTMPIYCMLRPRRGTDFVYSDEEMCALLTDMDLLRENGADGFV
FGSLNPDRSINVDQCRHVLLASGGLPVTFHRAFDLTDQKSMDENVDMLRE
LGFRRLLSSGFRPTAADGVDCLAQLIAKHQRDFIVMPGAGIKVSNLEEIL
TVSRCLEFHASALDTAGEDYVAPTTTRMECDVTMGKQDVDPYYGTNSIVV
RKMVTIAKAMSSRASFLDH

BO11278.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6136-PD 263 CG6136-PD 1..263 1..263 1351 100 Plus
CG6136-PC 263 CG6136-PC 1..263 1..263 1351 100 Plus
CG6136-PB 263 CG6136-PB 1..263 1..263 1351 100 Plus