Clone Sequence Records
BO11278.3prime Sequence
755 bp (644 high quality bases) assembled on 2006-04-19
> BO11278.3prime
ATGGTCTAGAAAGCTTGCGCGGGAGCTCATCGCTTTCGCAATGGTAACCA
TCTTTCGCACCACGATGGAGTTGGTTCCGTAGTAGGGGTCCACGTCCTGT
TTGCCCATGGTCACGTCACACTCCATTCGCGTGGTGGTGGGCGCCACGTA
GTCCTCGCCAGCCGTGTCCAGGGCGGAAGCGTGAAACTCTAGGCAGCGAC
TGACCGTGAGGATCTCCTCCAGGTTGGACACCTTTATGCCGGCGCCGGGC
ATAACTATAAAGTCTCTTTGATGTTTGGCTATCAGCTGTGCCAGGCAATC
TACGCCATCGGCAGCCGTGGGTCGGAATCCGCTGCTCAGCAGACGTCGGA
AACCTAGTTCCCGCAACATGTCGACATTCTCGTCCATGGACTTCTGGTCG
GTGAGGTCGAAGGCGCGGTGAAAGGTCACTGGCAGACCACCGGACGCCAG
CAAAACGTGCCGACACTGATCCACGTTGATGCTGCGATCCGGATTCAGGG
ATCCGAAAACGAAGCCATCGGCACCGTTTTCCCGCAGCAAGTCCATGTCC
GTGAGCAGGGCGCACATCTCCTCGTCGCTGTAGACAAAGTCGGTGCCCCG
CCGTGGCCTCAGCATGCAGTAAATGGGCATTGTGAGCGTTTCCTTAATAG
TTTTTAGGGTACCGATGCTGGGTGTCAAGCCACCTTCGCCCAATGCCGAA
CACAGTTCAATGCGTGAAGCTCCGCCTTCCTCGGCGGCAAAACCCGATCG
TATGG
BO11278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-PA | 792 | CG6136-RA | 53..789 | 755..19 | 3660 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-RD | 2071 | CG6136-RD | 452..1188 | 755..19 | 3670 | 99.9 | Minus |
CG6136-RC | 2177 | CG6136-RC | 452..1188 | 755..19 | 3670 | 99.9 | Minus |
CG6136-RB | 1398 | CG6136-RB | 452..1188 | 755..19 | 3670 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15371025..15371761 | 19..755 | 3670 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:21:25 has no hits.
BO11278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:56 Download gff for
BO11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-PA | 53..792 | 16..755 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:25 Download gff for
BO11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-PA | 53..792 | 16..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:54:53 Download gff for
BO11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 452..1192 | 15..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:26:38 Download gff for
BO11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 452..1192 | 15..755 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:26:38 Download gff for
BO11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15371020..15371761 | 15..755 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:54:53 Download gff for
BO11278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11196742..11197483 | 15..755 | 99 | | Plus |
BO11278.5prime Sequence
821 bp (686 high quality bases) assembled on 2006-04-19
> BO11278.5prime
GAAGTTATCAGTCGACATGATAAGAGAAATGTCCAACCACGATATCAAGC
TGGAGGTCTGCGTGGACTCCATACGATCGGCTTTTGCCGCCGAGGAAGGC
GGAGCTTCACGCATTGAACTGTGTTCGGCATTGGGCGAAGGTGGCTTGAC
ACCCAGCATCGGTACCCTAAAAACTATTAAGGAAACGCTCACAATGCCCA
TTTACTGCATGCTGAGGCCACGGCGGGGCACCGACTTTGTCTACAGCGAC
GAGGAGATGTGCGCCCTGCTCACGGACATGGACTTGCTGCGGGAAAACGG
TGCCGATGGCTTCGTTTTCGGATCCCTGAATCCGGATCGCAGCATCAACG
TGGATCAGTGTCGGCACGTTTTGCTGGCGTCCGGTGGTCTGCCAGTGACC
TTTCACCGCGCCTTCGACCTCACCGACCAGAAGTCCATGGACGAGAATGT
CGACATGTTGCGGGAACTAGGTTTCCGACGTCTGCTGAGCAGCGGATTCC
GACCCACGGCTGCCGATGGCGTAGATTGCCTGGCACAGCTGATAGCCAAA
CATCAAAGAGACTTTATAGTTATGCCCGGCGCCGGCATAAAGGTGTCCAA
CCTGGAGGAGATCCTCACGGTCAGTCGCTGCCTAGAGTTTCACGCTTCCG
CCCTGGACACGGCTGGCGAGGACTACGTGGCGCCCACCACCACGCGAATG
GAGTGTGACGTGACCATGGGCAAACAGGACGTGGACCCCTACTACGGAAC
CAACTCCATCGTGGTGCGAAAGATGGTTACCATTGCGAAAGCGATGAGCT
CCCGCGCAAGCTTTCTAGAAC
BO11278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-PA | 792 | CG6136-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-RD | 2071 | CG6136-RD | 400..1188 | 17..805 | 3945 | 100 | Plus |
CG6136-RC | 2177 | CG6136-RC | 400..1188 | 17..805 | 3945 | 100 | Plus |
CG6136-RB | 1398 | CG6136-RB | 400..1188 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15371025..15371813 | 805..17 | 3945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:07:07 has no hits.
BO11278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:02:58 Download gff for
BO11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:25:26 Download gff for
BO11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-PA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:06:14 Download gff for
BO11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 392..1192 | 5..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:50 Download gff for
BO11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 392..1192 | 5..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:50 Download gff for
BO11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15371020..15371820 | 5..809 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:06:14 Download gff for
BO11278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11196742..11197542 | 5..809 | 99 | | Minus |
BO11278.complete Sequence
823 bp assembled on 2006-10-10
GenBank Submission: FJ632055
> BO11278.complete
GAAGTTATCAGTCGACATGATAAGAGAAATGTCCAACCACGATATCAAGC
TGGAGGTCTGCGTGGACTCCATACGATCGGCTTTTGCCGCCGAGGAAGGC
GGAGCTTCACGCATTGAACTGTGTTCGGCATTGGGCGAAGGTGGCTTGAC
ACCCAGCATCGGTACCCTAAAAACTATTAAGGAAACGCTCACAATGCCCA
TTTACTGCATGCTGAGGCCACGGCGGGGCACCGACTTTGTCTACAGCGAC
GAGGAGATGTGCGCCCTGCTCACGGACATGGACTTGCTGCGGGAAAACGG
TGCCGATGGCTTCGTTTTCGGATCCCTGAATCCGGATCGCAGCATCAACG
TGGATCAGTGTCGGCACGTTTTGCTGGCGTCCGGTGGTCTGCCAGTGACC
TTTCACCGCGCCTTCGACCTCACCGACCAGAAGTCCATGGACGAGAATGT
CGACATGTTGCGGGAACTAGGTTTCCGACGTCTGCTGAGCAGCGGATTCC
GACCCACGGCTGCCGATGGCGTAGATTGCCTGGCACAGCTGATAGCCAAA
CATCAAAGAGACTTTATAGTTATGCCCGGCGCCGGCATAAAGGTGTCCAA
CCTGGAGGAGATCCTCACGGTCAGTCGCTGCCTAGAGTTTCACGCTTCCG
CCCTGGACACGGCTGGCGAGGACTACGTGGCGCCCACCACCACGCGAATG
GAGTGTGACGTGACCATGGGCAAACAGGACGTGGACCCCTACTACGGAAC
CAACTCCATCGTGGTGCGAAAGATGGTTACCATTGCGAAAGCGATGAGCT
CCCGCGCAAGCTTTCTAGACCAT
BO11278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-RD | 792 | CG6136-PD | 1..789 | 17..805 | 3945 | 100 | Plus |
CG6136-RC | 792 | CG6136-PC | 1..789 | 17..805 | 3945 | 100 | Plus |
CG6136-RB | 792 | CG6136-PB | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-RD | 2071 | CG6136-RD | 400..1188 | 17..805 | 3945 | 100 | Plus |
CG6136-RC | 2177 | CG6136-RC | 400..1188 | 17..805 | 3945 | 100 | Plus |
CG6136-RB | 1398 | CG6136-RB | 400..1188 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15371025..15371813 | 805..17 | 3945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:46:19 has no hits.
BO11278.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:35 Download gff for
BO11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RA | 1..792 | 17..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:48 Download gff for
BO11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RA | 356..1156 | 5..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:24 Download gff for
BO11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 400..1188 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:35 Download gff for
BO11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RA | 356..1156 | 5..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:19 Download gff for
BO11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6136-RB | 400..1188 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:19 Download gff for
BO11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15371022..15371813 | 17..807 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:24 Download gff for
BO11278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11196744..11197535 | 17..807 | 99 | | Minus |
BO11278.pep Sequence
Translation from 16 to 823
> BO11278.pep
MIREMSNHDIKLEVCVDSIRSAFAAEEGGASRIELCSALGEGGLTPSIGT
LKTIKETLTMPIYCMLRPRRGTDFVYSDEEMCALLTDMDLLRENGADGFV
FGSLNPDRSINVDQCRHVLLASGGLPVTFHRAFDLTDQKSMDENVDMLRE
LGFRRLLSSGFRPTAADGVDCLAQLIAKHQRDFIVMPGAGIKVSNLEEIL
TVSRCLEFHASALDTAGEDYVAPTTTRMECDVTMGKQDVDPYYGTNSIVV
RKMVTIAKAMSSRASFLDH
BO11278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6136-PD | 263 | CG6136-PD | 1..263 | 1..263 | 1351 | 100 | Plus |
CG6136-PC | 263 | CG6136-PC | 1..263 | 1..263 | 1351 | 100 | Plus |
CG6136-PB | 263 | CG6136-PB | 1..263 | 1..263 | 1351 | 100 | Plus |